TCONS_00012422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012422
Unique NameTCONS_00012422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012422 ID=TCONS_00012422|Name=TCONS_00012422|organism=Clytia hemisphaerica|type=transcript|length=286bp
tatatttttgcttttcttGTACTTTAAATGTTCTGATCATCATGGTGCTT
GCCcataacaaaaaCTCTAATCAATAATTGCACGTGTTTTGCCGAAATTC
TGACCAGCCTGTGATGCACCTTTATTTGAACCAGCCTGAAGACCGATGAT
ACCTTCGCCAGCTCGAAGTTGCTCTTCCGAGAACTCTCGTTTGTTTTCGC
TAGCTTCAGCTGGACCGAGAACGGGGCCGTCGTAATAACTTTGTGCTTTG
CGACCGAGAGCAACAATCCCGTTGATGACctgtttt
Run BLAST on NCBI

transcript from alignment at sc0000144:310328..311131+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012422 ID=TCONS_00012422|Name=TCONS_00012422|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at sc0000144:310328..311131+ (Clytia hemisphaerica)
tatatttttgcttttcttGTACTTTAAATGTTCTGATCATCATGGTGCTT
GCCcataacaaaaaatatttgaagtaTCAAAGAAACTGGAAACCGAAAAC
GGAAGAAGTTCGTTGTGGAATTTCCAAATACAGGTTATAATATATTAAGA
CGATGTTCTTATTTCATACATCCACCTCCGCGCCAATCATCAGTGAAAGT
CAAGCTAGAAATTTTTCGGTCTCAATGCTGACTTTCGTTTTTTGAGgcat
ttcaccaaaatttcgaaattataAGAATGAAATTCCTCATTCCTCAATTT
CATCAATCAATTGGAATCAACCTGTTTTGTTTCAGCCTCGAATTATTCTG
AGATAGACATTAGAAATATAGCAAAACACGGAACATGATTATTTGTGTAA
AAAGTATATCTATCTGTCTTTatgttttcaaaagtttatacaaatttaat
attttgatataaattatcTTACATGAAATAAGCAGGAAATAATGAAAGAA
CCTGGGATCTGCCTCATAGGTAGACAAAAAAACTCTAagagaataaaaaa
atatttaaaaagagaTAAGAATCTAAAAAAACCTCTAATCAATAATTGCA
CGTGTTTTGCCGAAATTCTGACCAGCCTGTGATGCACCTTTATTTGAACC
AGCCTGAAGACCGATGATACCTTCGCCAGCTCGAAGTTGCTCTTCCGAGA
ACTCTCGTTTGTTTTCGCTAGCTTCAGCTGGACCGAGAACGGGGCCGTCG
TAATAACTTTGTGCTTTGCGACCGAGAGCAACAATCCCGTTGATGACctg
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006973XLOC_006973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012422-exon-sc0000144-1491911889:310328..310391TCONS_00012422-exon-sc0000144-1491911889:310328..310391Clytia hemisphaericaexon
TCONS_00012422-exon-sc0000144-1510915933:310328..310391TCONS_00012422-exon-sc0000144-1510915933:310328..310391Clytia hemisphaericaexon
TCONS_00012422-exon-sc0000144-1575043694:310328..310391TCONS_00012422-exon-sc0000144-1575043694:310328..310391Clytia hemisphaericaexon
TCONS_00012422-exon-sc0000144-1491911889:310910..311131TCONS_00012422-exon-sc0000144-1491911889:310910..311131Clytia hemisphaericaexon
TCONS_00012422-exon-sc0000144-1510915933:310910..311131TCONS_00012422-exon-sc0000144-1510915933:310910..311131Clytia hemisphaericaexon
TCONS_00012422-exon-sc0000144-1575043694:310910..311131TCONS_00012422-exon-sc0000144-1575043694:310910..311131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:310328..311131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.54441	1.80882	8.18155	1.40467	0	0	0	0	2.66984	6.31999	0	0	3.36629	1.72985	10.7539	12.8871	12.0649	7.19349	3.89308	0	8.91491	1.87487	23.0175	21.2844	0	0	25.3264	31.273	38.9735	29.4987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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