TCONS_00012427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012427
Unique NameTCONS_00012427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012427 ID=TCONS_00012427|Name=TCONS_00012427|organism=Clytia hemisphaerica|type=transcript|length=423bp
TCTTCTCAATCTCAGCCTGTTGTTGTTCTCATTTCACCCCTCGTCGCTCT
GATGCAGAATCAGGTAGAGGAAGCAAACAAATTGAAGTATCTTGGACTCA
AATCTTCCACTCTCGATATTACAATGGTGAAGGAGATAAAATCTGGCTCT
AGTAAATTCAATCTTCTTCTTGGAACACCAGAATCGTGGATCTCAGACAA
ATGGCGAGAAGTTTTGGGCTCGACTTTCATGTTGGACAATTTAGTTTGTA
TTGTGGTGGATGAAGTTCATAAAGTGACATGgaGCCAATCGTcatccaaa
aattcaaaacctttTCGAGAAACGTTCAGCAGAATTGGTGAGCTAAGATC
TGCTTGTCGTCAAAATGTTCCTGTATTAGCTCTCAGTGCCACAATTGATT
TAGACCTTCAGAGCCTTGTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00012427-protein

>TCONS_00012427-protein ID=TCONS_00012427-protein|Name=TCONS_00012427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
SSQSQPVVVLISPLVALMQNQVEEANKLKYLGLKSSTLDITMVKEIKSGS
SKFNLLLGTPESWISDKWREVLGSTFMLDNLVCIVVDEVHKVTWSQSSSK
NSKPFRETFSRIGELRSACRQNVPVLALSATIDLDLQSLVK
Run BLAST on NCBI

transcript from alignment at sc0000144:434601..437715+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012427 ID=TCONS_00012427|Name=TCONS_00012427|organism=Clytia hemisphaerica|type=transcript|length=3115bp|location=Sequence derived from alignment at sc0000144:434601..437715+ (Clytia hemisphaerica)
TCTTCTCAATCTCAGCCTGTTGTTGTTCTCATTTCACCCCTCGTCGCTCT
GATGCAGAATCAGGTAGAGGAAGCAAACAAATTGAAGTATCTTGGACTCA
AATCTTCCACTCTCGATATTACAATGGTGAAGGAGATAAAATCTGGCTCT
AGTAAATTCAATCTTCTTCTTGGAACACCAGAATCGTGGATCTCAGACAA
ATGGCGAGAAGTTTTGGGCTCGACTTTCATGTTGGACAATTTAGTTTGTA
TTGTGGTGGATGAAGTTCATAAAGTGACATGGTTAGAAATTAGGTCAAAA
TTTGGCAtcatttgataaaatattttcctaCCCATCTTCAGTTGTTCAGA
CTAGACTAGAAGAGATTCTTATTCTTTTAGCTCCAGCTCTAGTCTAGTTC
TATTTGTTAATTAACATATTACATATGTGACATCCTGTGAGGCCACAGTA
TTATGATAGGAAGGAGATAAAATATCTTAAATATGAAACGAAAGCTTTCA
TAAGttctttttttgtatttcttttcatttcctgaatacagtagtatttt
tgtcagtctttatttatttttctcattttttgagcatgtaaaaaaaattg
aaagagctcataaatttttcatggattttttttgcaaactcaagtgttgt
tactaaaagaggtaacgagtagtaacgagtggtaacgatgtggtaacgag
tggtaacgaggtggtaacgatgtggtaacgaggtaacaagtggtaaccag
ttgaaaacggtggccctaagtctccaaatttgaatttctcgattcTAGTG
TTTTTGCAACAGATGCTGATGGCTCTTGAGGTTCTGCAGCAGGACCATGC
AGATCaggtgaatgtgcagtaggagtTAGAGATTTAGGcgaatgttatgg
tggagttgatggatctggtgaatgtgatggtaaaactggttgtttgggtg
aatgaaatcgtggaattgatggttctggtgaatgtgaatcaaagattgat
ggttctagaggttctgcatcaggagttggtgattctggtgaatgtgtatc
aggagttggtggttctggtgaatgttatGGTGGATTTGATGATTCTATTG
AatataatgctggtgttgatgggtctgatgaatccaatggtTGGAGTTGA
ATTTTGCTGAATGTGtatcaggagttgatgcttctggttaatgtacagca
ggagttggtgattctggtgaatgtacatcaggagtcagtggcgttgtggg
aaaatcttTCTGGAGGGGcaaaagccatttttttaaaaTGGCGCACCCCC
TAATTTCCCAAAGTGGTGCCCCTATCCAAcagtttttaaacttttactaa
ttcatttgcctaggcataatgaggatgGAAACATTTAGTGGAGAAcagta
gatatatctttgatgaatgggaaaaggaaaaaaaggcCCCACCatatggt
tggggccgactagaaaatttggaaaattaacTGTATGTTACCCTAAATTA
CTAAATAACAatgggacaaatttgacacttgctagagtgaaaagaaactt
aaagaaacgaTGTGTAATgcaagcgaagcgagcgaaaaaattggtgtttt
atgatttcaatattgttgtcagcaaattggtctttcatttaataatgcta
tgtTGTACACATAAAcacttgtaaattagctagattgcaaaaAAGTTCCC
AACTAaactgtattgcgagcgaagcgagcgaaaaaaattgcaagtatttt
aaaactATCCCAGTAAAATTGATCctggggcgcaatttaaggcgcataaa
gtagggtttttaagattggggcggtTAAAAAAATCTcctttggcgcccct
tgctcttcggcgccccttcaaaaaagctccgcaaagggggccatggcccc
cccgcccccctgccacaacgccactgggagttagtggttctggtgaatgt
acagcaggagttggtggttctggtgaatgtgcagcaggagttgatgcttc
tggtgaatgtgcagcaggagttgatgcttctggtgaatgtgcagcaggag
ttggtggttctggtgaatgtgcagcaggagttgttgattctggtgaatgt
gcagcaggagttattgattctggtgaatgtgcagcaggagttagtggttc
tggtgaatgtgcagcagaaGTTGATgcttttggtgaatgtgcagcaggag
ttagtggttctggtgaatatgatagTGGAGTTGATGGACCTGGCgaattt
gatggtggcattgatggttctggttaatgtgctgcaggatttgatggttc
tggtgaatgtgatggttaagttgatggttctggtgaatttgatggtggca
ttgatggTTGTGATGAATGTGCTGTAGGAGTTGATAGTTTTGGTGAATTT
ACAGCAGGAGTTAATATACTGATAAATTGTAATTGAGATGTTATTCATGG
ATGTAATAACAACACGTTCATTAACTAGCGAAAAATTTCAGATTCACCAT
AACTGTATTTTTATTACATCCATGAATGATATCTAAATAACAATTTATCA
AATATTAACTCCTGCTGCAAATTCAGCAGAACCATCAATGCCAACAACTC
ACTCCTGCtgaacattcaccagaagcattaACTACTGctacacattcacc
agaactacCAACTACTGCNTATCCATCAACTTCACCACAACATTCACCTA
AATCTCTAACTCCTACTGCACATTCCCCAGATCTGAcaggtcctgctgca
gaacctcaagagccatcgagaaattcaaatttagaGACTTAGGGCCACCT
TTTTCAGctggttaccactcgttacctcgttaccacatcgttaccacttg
ttaccacctcgttaccactcgttaccacatcgttaccactcgttaccact
cgttacctcttttagtaacaacggaaCTCAAGTaataatgaataaaatta
acttaacaatttttattttacaggaGCCAATCGTcatccaaaaattcaaa
acctttTCGAGAAACGTTCAGCAGAATTGGTGAGCTAAGATCTGCTTGTC
GTCAAAATGTTCCTGTATTAGCTCTCAGTGCCACAATTGATTTAGACCTT
CAGAGCCTTGTGAAG

Coding sequence (CDS) from alignment at sc0000144:434601..437715+

>TCONS_00012427 ID=TCONS_00012427|Name=TCONS_00012427|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0000144:434601..437715+ (Clytia hemisphaerica)
TCTTCTCAATCTCAGCCTGTTGTTGTTCTCATTTCACCCCTCGTCGCTCT
GATGCAGAATCAGGTAGAGGAAGCAAACAAATTGAAGTATCTTGGACTCA
AATCTTCCACTCTCGATATTACAATGGTGAAGGAGATAAAATCTGGCTCT
AGTAAATTCAATCTTCTTCTTGGAACACCAGAATCGTGGATCTCAGACAA
ATGGCGAGAAGTTTTGGGCTCGACTTTCATGTTGGACAATTTAGTTTGTA
TTGTGGTGGATGAAGTTCATAAAGTGACATGgaGCCAATCGTcatccaaa
aattcaaaacctttTCGAGAAACGTTCAGCAGAATTGGTGAGCTAAGATC
TGCTTGTCGTCAAAATGTTCCTGTATTAGCTCTCAGTGCCACAATTGATT
TAGACCTTCAGAGCCTTGTGAAGTCTTCTCAATCTCAGCCTGTTGTTGTT
CTCATTTCACCCCTCGTCGCTCTGATGCAGAATCAGGTAGAGGAAGCAAA
CAAATTGAAGTATCTTGGACTCAAATCTTCCACTCTCGATATTACAATGG
TGAAGGAGATAAAATCTGGCTCTAGTAAATTCAATCTTCTTCTTGGAACA
CCAGAATCGTGGATCTCAGACAAATGGCGAGAAGTTTTGGGCTCGACTTT
CATGTTGGACAATTTAGTTTGTATTGTGGTGGATGAAGTTCATAAAGTGA
CATGgaGCCAATCGTcatccaaaaattcaaaacctttTCGAGAAACGTTC
AGCAGAATTGGTGAGCTAAGATCTGCTTGTCGTCAAAATGTTCCTGTATT
AGCTCTCAGTGCCACAATTGATTTAGACCTTCAGAGCCTTGTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006976XLOC_006976Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012427-proteinTCONS_00012427-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012427-exon-sc0000144-1491911889:434601..434881TCONS_00012427-exon-sc0000144-1491911889:434601..434881Clytia hemisphaericaexon
TCONS_00012427-exon-sc0000144-1510915933:434601..434881TCONS_00012427-exon-sc0000144-1510915933:434601..434881Clytia hemisphaericaexon
TCONS_00012427-exon-sc0000144-1575043694:434601..434881TCONS_00012427-exon-sc0000144-1575043694:434601..434881Clytia hemisphaericaexon
TCONS_00012427-exon-sc0000144-1491911889:437574..437715TCONS_00012427-exon-sc0000144-1491911889:437574..437715Clytia hemisphaericaexon
TCONS_00012427-exon-sc0000144-1510915933:437574..437715TCONS_00012427-exon-sc0000144-1510915933:437574..437715Clytia hemisphaericaexon
TCONS_00012427-exon-sc0000144-1575043694:437574..437715TCONS_00012427-exon-sc0000144-1575043694:437574..437715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:434601..437715 +
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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