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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012429 ID=TCONS_00012429|Name=TCONS_00012429|organism=Clytia hemisphaerica|type=transcript|length=935bp
CAAAATCTATACTCAAGACAGCCGGCTCCAATGCAAAGATATAATAAGTA
GAAGtatgaatgaaaatgaagaaacaaaTTGAAGAAAACTAAGTAAAGAG
AAcgctgaaaatgtcaaaatttttctGTCGATGTGTTTTATCGAGAATCA
AAGGAAATTAAAAAGtttggttttcatgATGGTAAACGGAAGACTGAAGA
ACAACGCTTACACAGAACTCAACAACAAGTCTTGCCAATGTCCCAAACAT
GATCAACGTCAAATCAACTTGACCATAAATTACTCAGCAACAGAAGAAAG
GATTTCATCTTGTCCTGCTTACGACAATGTGATTACACCACCACCGTCTT
ATAGAAGTTTGTGTGGATGTTTTTTGACAGACGAGCCACCGAGATATCAA
GTTGTAACTGGACGACAGCTAGATTATGGTACAGTGACAACTTCAACCAT
TTTCGAAACACAATTCGTCAGGACAAGCCGTAATGCATCGTTGAAGCTGT
TGGTTGTTGTATTAATTCTATTGGCAATCAGTTTCATTGCTCTCTTAGTA
TCTTTGATATTAGGTTGTTATTCATGGAGAtgttaaaacaaaaattaaac
attATTAGTTTCGTTGTCATTATCGTAGTGGGTCGACCGAAATTCGagca
aactggggaggcaagATACAAGAATATGATTttataaatcataaaatttt
gacTTTAGCTCCCCCTAttaaatgtaaatattttttgtaaaaattacatG
AGTGAAACGAGTACGAAAATCTttgggtattttctctctttttggcaaAA
GACTGCCAATTCTAAGGTGCAAAAAATCAAAGGGACGCcaaaattagtaa
tcagagACGTCTTTTGTGCCCTTTTTATTTCCACGCCACAACGCCCCCAA
AAAAGTCGGCTGGGGAGGGGCACTTTTCTCTTGAA Run BLAST on NCBI protein sequence of TCONS_00012429-protein >TCONS_00012429-protein ID=TCONS_00012429-protein|Name=TCONS_00012429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MCFIENQRKLKSLVFMMVNGRLKNNAYTELNNKSCQCPKHDQRQINLTIN
YSATEERISSCPAYDNVITPPPSYRSLCGCFLTDEPPRYQVVTGRQLDYG
TVTTSTIFETQFVRTSRNASLKLLVVVLILLAISFIALLVSLILGCYSWR
C Run BLAST on NCBI transcript from alignment at sc0000144:499081..504314+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012429 ID=TCONS_00012429|Name=TCONS_00012429|organism=Clytia hemisphaerica|type=transcript|length=5234bp|location=Sequence derived from alignment at sc0000144:499081..504314+ (Clytia hemisphaerica)
CAAAATCTATACTCAAGACAGCCGGCTCCAATGCAAAGATATAATAAGTA
GAAGtatgaatgaaaatgaagaaacaaaTTGAAGAAAACTAAGTAAAGAG
AAcgctgaaaatgtcaaaatttttctGTCGATGTGTTTTATCGAGAATCA
AAGGAAATTAAAAAGGtatttatttctcatttttatataatttttgtttt
tatataaaaacataaatataaacCCTGGATaaagctatatccaccatctt
cGATCGGAGCTTtcaaaagtggtaccctaatggaagcatagatttataaa
gccgaggtaggaaatcctatctaaatcacgtgacattacaacagaatttc
agcgcttgaccaatcagaagcttcgcgggttttcgaaaacaatagcagca
atattttttgcgatattcatttttttttcttggaagagcttaaagcactc
catctagcccttcgggctttataaatctatgaatGGAAGCACTACTCGAC
GTGGGTCAAATTATAATCCAatgaaattttcgttttttcacCCACATTGA
GAAATGGTTAAAAACGTAATTGTACAGATCAAATATTAATCAAACGAAAC
TAATCCCTGATAACTGGATAAATCGACCCTGAAATAACCTGTGGGTAGAA
AGAACAACATCATTGAGagaaaatagtttttgaaagatttaagcacatcc
ccttctcacagacccaatgGNAGAAAGAACATCATCATTGGGagaaaata
gtttttaaaagattttagcacaccccttctcacagacccaattGGACCCC
AAAtattgtccccagtggaaaattatactccaatttttgtacccactgaa
aataatcaaataaaccaatcctcgctgcaaaatagtatgctattttcccc
atccccactgaattttctgacttgaaaataaTAGGAAttaaatccccagt
cataaaaatAATGCGgaaaatatcaatccccatcgagtttcagtctgtta
tttttaacagacccccccccccattgGCTAAAAAAAGTCCTACCGGATCT
GTGAAAAGGGAATGTTTTAGCTAGCTTGGAACAAAACACATCAATTCTTC
ATAGAAAATTGAGCGAAAAAATCAATCACATAAATCCGCAACTTCTTAGG
AGGGAGGAGGCGTCTATAATCTTTCACAGTGACCAGATGAGCctaaagac
aatttttttataagaacgtcaaaaaaagGTCAAACTTTTAGACGTTCTGG
GTTTAAAACCTAAAGATTTTCTTAAACTAAAAGcgttattttttttagca
tCAAGTGATTGTGTATTTTGGTCTTACATCCCTAAGAAATCGtgcttttt
ttaggttttgcaAACGACTAAGATATTTTTGTCTTGCATACTGTGTTCTT
GTATCAGAAAACGCGCATAATTAAGTTCAAAGAAGGTGGAAAGTTAACTG
CAATCATATACGAGAATTGCGGGATAAGAGTAGAATATAAGCTTCCAGCC
CCCTTCCCCAGTGGCAATGTTGAAGGACATTGGAAAAGTCAGTGGGAACA
GCGCTTGCACTAAACATTGCCACTGGGGGAAGGGGGGCATTCCATTGTTT
TCCAgcattttccagtgtttttctcaaacattaaaGTCCATGGTTGTAGT
AAATTCAAATCTTAACTTTACAATTTCTtgattagtttggttttcatgAT
GGTAAACGGAAGACTGAAGAACAACGCTTACACAGAACTCAACAACAAGT
CTTGCCAATGTCCCAAACATGATCAACGTCAAATCAACTTGACCATAAAT
TACTCAGCAACAGAAGAAAGGATTTCATCTTGTCCTGCTTACGACAATGT
GATTACACCACCACCGTCTTATAGAAGTTTGTGTGGATGTTTTTTGACAG
ACGAGCCACCGAGATATCAAGTTGTAACTGGACGACAGCTAGTAAGGAAC
TTTTGGGACCTTAAACATATACCTTTCACCTATGAATgaatttatgatat
ttttctttaaggtggtagtctaccgagaaatggaaaatcatcgaaaaaat
tgtctaattttggtttttgggtgttttgagatccttaggtctttctgaac
atctcctggaaatttcagagagatatctttatttttcaggtCGCAGTGAG
CATTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctgaaaatttcattacgaaa
tgtaaagaagttcttgagttattgcaaaaaatgtgattttttgacttttg
aaatctggcggtagactaccaccttaaaatTAGGTCTTCTCATTTTCTGT
TTCAAGCATTATTGAAGCAAACGTTCAATTTGCGTAAGGGAATGGCCTTT
ACAGATTTGGAAGATTGCTTCTATAATGGCGGGAAATTTTGTAATTAAGT
TAAAGATAGAACAAAAAGTtaaacatccaaaggcttcaaagatttcggat
gttcttataaaaaaaaaaaacgtgtatgttgaAAACATAGAAAGATATCT
AAATTTTCGTTGTTAATAACCTGGGCGTGAACTTGGTATTCTCATTTATA
AACGTTCGCCgcttcttattattttttttcttttttgttccaCCCGGTTC
TTAGTGTAATCTCATGCTTAGGGTAATTCGATAGACCTTTTTGAAAGCGT
TAATTTGAAATATCTTGTGTTTAAGTGCTGCAATTGGCTCTGTATGCACC
TTAAAACTATGTTTCCATACCTAATAAATAGCGTTCTAGGTTGTTTGGAA
GGTATGTCATATTCCTCGCCCAATTATGAATGGTGCCAGTCGTGGTGGGT
GACAATTTTTACAGAACTCTACTACTTATATCAAACAGCTTTCCGTGGCC
TATTTAAGAACTAAAGTCTCTGAAATCTAATGTAATATAGCATCAAccag
aaattaaatatttattATATTGAAATTCTGGATCAACTTCCCTCGtttca
tattttgaaatctttgaaaaaacaaatctttcttaaaatttcaaaaaagt
ttaataTGCACAGGAAATTAATTCAGAATTTCCAATCAGAATTGCTAATA
CAAATTGTCTCGGTAATAACGTTTTTAAGTTCAGAAATTAATATTCTTTT
CAATACTATTTATTGTTCAGGATTATGGTACAGTGACAACTTCAACCATT
TTCGAAACACAATTCGTCAGGACAAGCCGTAATGCATCGTTGAAGCTGTT
GGTTGTTGTATTAATTCTATTGGCAATCAGTTTCATTGCTCTCTTAGTAT
CTTTGATATTAGGTTGTTATTCATGGAGAtgttaaaacaaaaattaaaca
ttATTAGTTTCGTTGTCATTATCGTAGTGGGTCGACCGAAATTCGagcaa
actggggaggcaagATACAAGAATATGATTttataaatcataaaattttg
acTTTAGCTCCCCCTAttaaatgtaaatattttttgtaaaaattacatGA
GTGAAACGAGTACGAAAATCTttgggtattttctctctttttggcaaAAG
ACTGCCAATTCTAAGGTGCAAAAAATCAAAGGGACGCcaaaattagtaat
cagagACGTCTTTTGTGCCCTTTTTATTTCCACGCCACAACGCCCCCAAA
AAAGTCGGCTGGGGAGGGGCACTTTTCTCTTGAA Coding sequence (CDS) from alignment at sc0000144:499081..504314+ >TCONS_00012429 ID=TCONS_00012429|Name=TCONS_00012429|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000144:499081..504314+ (Clytia hemisphaerica)
ATGTGTTTTATCGAGAATCAAAGGAAATTAAAAAGtttggttttcatgAT
GGTAAACGGAAGACTGAAGAACAACGCTTACACAGAACTCAACAACAAGT
CTTGCCAATGTCCCAAACATGATCAACGTCAAATCAACTTGACCATAAAT
TACTCAGCAACAGAAGAAAGGATTTCATCTTGTCCTGCTTACGACAATGT
GATTACACCACCACCGTCTTATAGAAGTTTGTGTGGATGTTTTTTGACAG
ACGAGCCACCGAGATATCAAGTTGTAACTGGACGACAGCTAGATTATGGT
ACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTCAGGACAAGCCG
TAATGCATCGTTGAAGCTGTTGGTTGTTGTATTAATTCTATTGGCAATCA
GTTTCATTGCTCTCTTAGTATCTTTGATATTAGGTTGTTATTCATGGAGA
tgttaaATGTGTTTTATCGAGAATCAAAGGAAATTAAAAAGtttggtttt
catgATGGTAAACGGAAGACTGAAGAACAACGCTTACACAGAACTCAACA
ACAAGTCTTGCCAATGTCCCAAACATGATCAACGTCAAATCAACTTGACC
ATAAATTACTCAGCAACAGAAGAAAGGATTTCATCTTGTCCTGCTTACGA
CAATGTGATTACACCACCACCGTCTTATAGAAGTTTGTGTGGATGTTTTT
TGACAGACGAGCCACCGAGATATCAAGTTGTAACTGGACGACAGCTAGAT
TATGGTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGTCAGGAC
AAGCCGTAATGCATCGTTGAAGCTGTTGGTTGTTGTATTAATTCTATTGG
CAATCAGTTTCATTGCTCTCTTAGTATCTTTGATATTAGGTTGTTATTCA
TGGAGAtgttaaATGTGTTTTATCGAGAATCAAAGGAAATTAAAAAGttt
ggttttcatgATGGTAAACGGAAGACTGAAGAACAACGCTTACACAGAAC
TCAACAACAAGTCTTGCCAATGTCCCAAACATGATCAACGTCAAATCAAC
TTGACCATAAATTACTCAGCAACAGAAGAAAGGATTTCATCTTGTCCTGC
TTACGACAATGTGATTACACCACCACCGTCTTATAGAAGTTTGTGTGGAT
GTTTTTTGACAGACGAGCCACCGAGATATCAAGTTGTAACTGGACGACAG
CTAGATTATGGTACAGTGACAACTTCAACCATTTTCGAAACACAATTCGT
CAGGACAAGCCGTAATGCATCGTTGAAGCTGTTGGTTGTTGTATTAATTC
TATTGGCAATCAGTTTCATTGCTCTCTTAGTATCTTTGATATTAGGTTGT
TATTCATGGAGAtgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012429-exon-sc0000144-1491911889:499081..499245 | TCONS_00012429-exon-sc0000144-1491911889:499081..499245 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1510915933:499081..499245 | TCONS_00012429-exon-sc0000144-1510915933:499081..499245 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1575043694:499081..499245 | TCONS_00012429-exon-sc0000144-1575043694:499081..499245 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1491911889:500766..501021 | TCONS_00012429-exon-sc0000144-1491911889:500766..501021 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1510915933:500766..501021 | TCONS_00012429-exon-sc0000144-1510915933:500766..501021 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1575043694:500766..501021 | TCONS_00012429-exon-sc0000144-1575043694:500766..501021 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1491911889:503801..504314 | TCONS_00012429-exon-sc0000144-1491911889:503801..504314 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1510915933:503801..504314 | TCONS_00012429-exon-sc0000144-1510915933:503801..504314 | Clytia hemisphaerica | exon |
| TCONS_00012429-exon-sc0000144-1575043694:503801..504314 | TCONS_00012429-exon-sc0000144-1575043694:503801..504314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:499081..504314 + |
Blast
The following BLAST results are available for this feature:
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