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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012432 ID=TCONS_00012432|Name=TCONS_00012432|organism=Clytia hemisphaerica|type=transcript|length=1760bpRun BLAST on NCBI protein sequence of TCONS_00012432-protein >TCONS_00012432-protein ID=TCONS_00012432-protein|Name=TCONS_00012432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp MKNKGKTEEMKALKSRHGTASMILKWTLTILFSTVVRWLLIYFDFGEVFKRun BLAST on NCBI transcript from alignment at sc0000144:6364..15236- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012432 ID=TCONS_00012432|Name=TCONS_00012432|organism=Clytia hemisphaerica|type=transcript|length=8873bp|location=Sequence derived from alignment at sc0000144:6364..15236- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:6364..15236- >TCONS_00012432 ID=TCONS_00012432|Name=TCONS_00012432|organism=Clytia hemisphaerica|type=CDS|length=16056bp|location=Sequence derived from alignment at sc0000144:6364..15236- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012432 vs. Swiss-Prot (Human)
Match: PIGU (Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3) HSP 1 Score: 311.997 bits (798), Expect = 3.966e-99 Identity = 173/414 (41.79%), Postives = 254/414 (61.35%), Query Frame = 2
Query: 200 GEVFKRRVEISSPITSWFRVEECITLSQLGLSPYSGDVCHQPPLIVEIFKLLPSKWTVPFFVMADLATGIMLSKLCQCYTASQLSAQDS--EKKEYATDTKSNWIKENSIVHFIVLNL---YLLNPFTILTCVAQSTNVINNFVISLLLFSMSKGYWSMASICVAFVSYISLYPIMLIVPVILSVKKGANGNMLKIFACLTWFFLTMFALLY-GSYVAN--------HSWDFIDAVYGFILQAPDLTPNMGLFWYFFLEMFDHFRLFFLVVYQINVFIYALPLAIVFRNRPMILSYALLSLMVLFQSYSNMGNLSLPFALIPLWSHLYPYMRNFLLIAGMFFFTSLLAPSMWYLWIYAGMGNANFFYAVTLAYNTAQVFLLSDVLYAFLRHQFHLKNGLSPKTKDGKEGIVIMK 1399
E RVE+ SP++SW RV E ++L LG+SPYSG V H+ PLI+ +F L + F++ D T I L Q + Q E +YA D + I+ + +I L + YLLNP+TIL+CVA+ST INN +I+ + + KG +++I +A +Y SLYP+ L VP +L + + + K+ + W F +A++Y GS V SWDFI AVYGFIL PDLTPN+GLFWYFF EMF+HF LFF+ V+QINVF Y +PLAI + P+ + ++++ +F+SY +G+++L A P+W+HLY ++RN ++ + SLL P +W+LWIYAG N+NFFYA+TL +N Q+ L+SD YAFLR +++L +GL KDG E ++++K
Sbjct: 25 AEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSGAVFHETPLIIYLFHFL-IDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDV-AELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSAFLSAIFLALATYQSLYPLTLFVPGLLYLLQRQYIPV-KMKSKAFWIFSWEYAMMYVGSLVVIICLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAEMFEHFSLFFVCVFQINVFFYTIPLAIKLKEHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGLYLTAKDGTEAMLVLK 435 The following BLAST results are available for this feature:
BLAST of TCONS_00012432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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