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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012434 ID=TCONS_00012434|Name=TCONS_00012434|organism=Clytia hemisphaerica|type=transcript|length=940bp CTAAAGATGAATATGCTGCACCATAGTTAGGCCtataaactttttttgtt gaatttcaggaTATCCCCCAATGGCTCCAGGAGGACAACCGagTCATGGA CCACAGCCTGGATTCGATTCTGTTGATTCAGACCCAGAGGATTaTGTACG TTCCAAAGATGCAAAACAACCGGTGACTGTCAAGTTTGTCAACAAAACAA CTTCAAAGGTTAAACTTTACTGGATTGActacaaaggaaaatttaaaaag tctgGCAAAATAAAGGAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGG TCACAAATTCATGGTGGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACG GGAATGAAATGTTTATTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTG AAAGCAGACATCACACATGGTCCAAAAGACATTAAAAACTTACGATCTGC TCAAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCGTACACATTCAT ACGCTACCCTTGAACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAA GATATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTA CTTGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATT ATGGACAATTCTGGAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAA AAAGTCTTAATCACTGAGGATTTAGATGACAGCTCTTCTTCAAGCAGCTC CGACTAATTATCAGGGCATCTACCTGTCTTTGTATTTGTCGCTCGCATTT TGTGTTTAAACATGCACCCTTCATTTTTCTATCTAGAGATGTTTTGAAGA ATACTTCGTAATAATGTGTTAaactattttttaaatttttggtttGAGGA GATTCAGACTAAATGTTTAGTCAAAATCGTATGAAAATTA Run BLAST on NCBI protein sequence of TCONS_00012434-protein >TCONS_00012434-protein ID=TCONS_00012434-protein|Name=TCONS_00012434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MAPGGQPSHGPQPGFDSVDSDPEDYVRSKDAKQPVTVKFVNKTTSKVKLY WIDYKGKFKKSGKIKEGRVEVVDSYEGHKFMVEGKKSSDPVINGNEMFIV RTGHGSHGEVKADITHGPKDIKNLRSAQNGHPVQLKFSNRTHSYATLELI DQSGHTKHLKDIAPKKAWSFNTFEGQYLVAHEKGKKHEKFALNYGQFWKA TKPHIPNFVEKVLITEDLDDSSSSSSSD Run BLAST on NCBI transcript from alignment at sc0000144:15680..18985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012434 ID=TCONS_00012434|Name=TCONS_00012434|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at sc0000144:15680..18985- (Clytia hemisphaerica) CTAAAGATGAATATGCTGCACCATAGTTAGGCCTATAAACTTTTTTTGTT
GAATTTCAGGATATCCCCCAATGGCTCCAGGAGGACAACCGGTAAGATTT
AATTTTCGTTGATGCGTTGTAAATATTTCCATCGATTAAAAGTCCGCCTT
CCAAACCTTTTTTTAATACTAGTTTAAAATAAGGTTGTAATGATTACATA
CAATGCAAATTGACTGCAATAAGTAAAATAGATATTTTTGAATTGAACAT
TTTACTGTTTGTTTAAAAGAAAAACTTTCTTCGTTAGCCCCTTGAGTATC
CCTTTTGATATTCTTTTCTTTCTTTTTCTTTAGAGTCATGGACCACAGCC
TGTAAGCTTTTATATTGATCGAGGTTGTCATTTTATTATCTTTCTAATTC
CTTTTATATTTGCTTGTATTGGTATTTTTACCATCTTCTTAAGATTTTAC
ATCTTTTCTTTTAGGGATTCGATTCTGTTGATTCAGACCCAGAGGATTGT
AAGTAGCATAGTGTTTTTGAGATCACCGAATCAATCAAGTGTTACGTTCT
ATTTTGTATAATGGAAAGCTACTTGCTAGATCTAAAACAGTTTTCTATTT
TGTATTTTGTAGATGTACGTTCCAAAGATGCAAAACAACCGGTGACTGTC
AAGTTTGTCAACAAAACAACTTCAAAGGTTAAACTTTACTGGATTGACTA
CAAAGGAAAATTTAAAAAGTCTGGCAAAATAAAGGAAGGTCGAGTTGAGG
TGGTTGACAGCTATGAAGGTCACAAATTCATGGTGGAAGGCAAGAAAAGT
TCAGACCCGGTTATCAACGGGAATGAAATGTTTATTGTTCGCACTGGTCA
TGGAAGCCATGGAGAAGTGAAAGCAGACATCACACATGGTCCAAGTAAGA
ACTGTCCTTATTGTTTTCAAGTAGTCTTGAGAATTTGAGCGTATTGTGCT
CATTTCTTCAAATAAAGGTCACAGTGAAATTACATACGGAAATTATGGGC
AGTCAGTAGGTCTTTGTACAAATAGTAGAAGAAACATCCTCAAACTTTCC
CGATCATGGGAGAGGAACCGCTTGAAACGTAGTCGAACGTAAATCTCACG
ATCCAAGCTACGATAAACTTTCATGATGAATATTACTGGCTCGATAAACT
CTAACTTATTTAGACAACAGTGATCTTTAAATTTGAAAATTTTAAATGCG
GCACTTACCGGGTGCGCCAAACTAAGTATATAAGGTTTGTCAAGACCAGA
GGGGTGGGTACTAATATCCAAGACACATATGAGTACTAAAAGGGTTTTTG
ACGATTTTTGACATACCCCCACCTAATTTTTGAAAAGGAATTTTTTTTGG
ACATTTTAGCATAGTGACCATCTAAATTAGGCTTATTTTGAAATTCGGTT
CAGAGAATGGGTCTTTGGACTTTCAACAAAATGCCAACTCTGGTTATTTA
GGCTGTCAATGAACCTGATCTCTCTATATTCTAGATGAAGACTCAGAAAC
AGTCCAGACACTTTTGCTCTGTTCTACTTTAGTTATTGCAAAGAATGATT
AGTTACTTTTCACCTCTAATTTACAGCTTGCTATTTTTTTTATCTAGTTA
TCCATGGTTCTTTTCAAAAATTAAGTATTTAAACTTCGAAAACATTTTTT
TTCTATAGTATATAAAAGCAGAACATTAAATACACCCCTGTTTCACATCC
CCGGTGGAACCTTTTTCCTCAGTGGGAATAAAAATTCTTATTGAAATGCT
AATGGGGATAGAAATTCTATTGTTCCAAGGTTAAAAAACCCAGTGGGGAT
GGTTTTGGAGTGCAATTTTTAAACATAGAATTTCGAGTGAGGATAAAAAC
AAAGTCAATTTCCCAGTGGGGACGAAATTTTTGCTTAATTTGTGGCACAG
GGGTGTTTAAATCTTAAATATANCTGAAATTCAAGGGTATTTTCCCAGTG
GGGACGAAATTTTTGCTTAATTTGTGGCACAGGGGTGTTTAAATCTTAAA
TATGGAAAGTTTTTATTCTTTTCATTTTGCCTAAAATGCTCGATCAATAG
TTAAATTTCCTAAAATTTAGTGATTTTTATACTCGTAAATTTCTTAAAGA
CCCCACCTAATTTGGGATTTTAGTATGGTACTAAAATGCTTTAAGGCTTT
TTTTTGTAATAATATCATGTCACTAAAGGTCACGATGTCTTAAATTTTAG
TACCGACCCCCCCCCCGGTCAAGATTAGTAGTAACTAACGGTTAGACATT
TTTTTGGATTTTTTTAATTCTATTAAATTTTGATATATAAAGCTTCCATC
TCAGTCAATCAAAAGTTGTCAAAAAACTGAAAGTTCTAACCTACCGAAAA
ATTGCTACTGGTATTGTCATCTCTCGAGGACCTCATCATGGTTCATACTG
TGGCAGTGGTTTTTAAAATCTTTTTTAAAGTGAAAGGCACCCTATTCGGG
AAACTAGATTCGGGAAACTAGATCAAGCGTGTTGAAAAGGTGGAAAGGTC
TAAGTTTGGTACGGAAGCTTTTCTAGTTCTTTTCTTTTCTTTTTCTTTTA
AGAGGGTGAATATACGGTAGCACATGGTCAGTCACTACTGTTATACTTTA
TTTCCCATTTCAGAAGACATTAAAAACTTACGATCTGCTCAAAATGGACA
TCCCGTTCAACTGAAGTTTTCAAATCGTACACATTCATACGCTACCCTTG
AACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAAGATATCGCTCCA
AAGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTACTTGGTTGCTCA
CGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATTATGGACAATTCT
GGAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAAAAAGTCTTAATC
ACTGAGGGTAAGTCAATGTCCCTCTTGTGAAATCTGCTTCTAAAACTGAA
TTCTCGTAAGGTGTTTGTCTCAGTGGATAATAATTTGAATAAATTTGTTT
GATTAATTACATGTTCCTTTTCAATAAAACCAGATAAAACAGCTATTCAG
AGACAATTTATTCTATCATTCTCTTTTCTTTATAGATTTAGATGACAGCT
CTTCTTCAAGCAGCTCCGACTAATTATCAGGGCATCTACCTGTCTTTGTA
TTTGTCGCTCGCATTTTGTGTTTAAACATGCACCCTTCATTTTTCTATCT
AGAGATGTTTTGAAGAATACTTCGTAATAATGTGTTAAACTATTTTTTAA
ATTTTTGGTTTGAGGAGATTCAGACTAAATGTTTAGTCAAAATCGTATGA
AAATTA Coding sequence (CDS) from alignment at sc0000144:15680..18985- >TCONS_00012434 ID=TCONS_00012434|Name=TCONS_00012434|organism=Clytia hemisphaerica|type=CDS|length=4122bp|location=Sequence derived from alignment at sc0000144:15680..18985- (Clytia hemisphaerica) ATTTAGATGACAGCTCTTCTTCAAGCAGCTCCGACTAAAAGACATTAAAA ACTTACGATCTGCTCAAAATGGACATCCCGTTCAACTGAAGTTTTCAAAT CGTACACATTCATACGCTACCCTTGAACTTATCGATCAAAGCGGTCACAC GAAGCACTTGAAAGATATCGCTCCAAAGAAAGCCTGGTCATTCAACACAT TCGAAGGACAGTACTTGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAG TTTGCCTTGAATTATGGACAATTCTGGAAAGCCACCAAACCTCACATTCC CAATTTCGTGGAAAAAGTCTTAATCACTGAGGATGTACGTTCCAAAGATG CAAAACAACCGGTGACTGTCAAGTTTGTCAACAAAACAACTTCAAAGGTT AAACTTTACTGGATTGACTACAAAGGAAAATTTAAAAAGTCTGGCAAAAT AAAGGAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGGTCACAAATTCA TGGTGGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACGGGAATGAAATG TTTATTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTGAAAGCAGACAT CACACATGGTCCAAGGATTCGATTCTGTTGATTCAGACCCAGAGGATTAG TCATGGACCACAGCCTATGGCTCCAGGAGGACAACCGATTTAGATGACAG CTCTTCTTCAAGCAGCTCCGACTAAAAGACATTAAAAACTTACGATCTGC TCAAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCGTACACATTCAT ACGCTACCCTTGAACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAA GATATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTA CTTGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATT ATGGACAATTCTGGAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAA AAAGTCTTAATCACTGAGGATGTACGTTCCAAAGATGCAAAACAACCGGT GACTGTCAAGTTTGTCAACAAAACAACTTCAAAGGTTAAACTTTACTGGA TTGACTACAAAGGAAAATTTAAAAAGTCTGGCAAAATAAAGGAAGGTCGA GTTGAGGTGGTTGACAGCTATGAAGGTCACAAATTCATGGTGGAAGGCAA GAAAAGTTCAGACCCGGTTATCAACGGGAATGAAATGTTTATTGTTCGCA CTGGTCATGGAAGCCATGGAGAAGTGAAAGCAGACATCACACATGGTCCA AGGATTCGATTCTGTTGATTCAGACCCAGAGGATTAGTCATGGACCACAG CCTATGGCTCCAGGAGGACAACCGATTTAGATGACAGCTCTTCTTCAAGC AGCTCCGACTAAAAGACATTAAAAACTTACGATCTGCTCAAAATGGACAT CCCGTTCAACTGAAGTTTTCAAATCGTACACATTCATACGCTACCCTTGA ACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAAGATATCGCTCCAA AGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTACTTGGTTGCTCAC GAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATTATGGACAATTCTG GAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAAAAAGTCTTAATCA CTGAGGATGTACGTTCCAAAGATGCAAAACAACCGGTGACTGTCAAGTTT GTCAACAAAACAACTTCAAAGGTTAAACTTTACTGGATTGACTACAAAGG AAAATTTAAAAAGTCTGGCAAAATAAAGGAAGGTCGAGTTGAGGTGGTTG ACAGCTATGAAGGTCACAAATTCATGGTGGAAGGCAAGAAAAGTTCAGAC CCGGTTATCAACGGGAATGAAATGTTTATTGTTCGCACTGGTCATGGAAG CCATGGAGAAGTGAAAGCAGACATCACACATGGTCCAAGGATTCGATTCT GTTGATTCAGACCCAGAGGATTAGTCATGGACCACAGCCTATGGCTCCAG GAGGACAACCGATTTAGATGACAGCTCTTCTTCAAGCAGCTCCGACTAAA AGACATTAAAAACTTACGATCTGCTCAAAATGGACATCCCGTTCAACTGA AGTTTTCAAATCGTACACATTCATACGCTACCCTTGAACTTATCGATCAA AGCGGTCACACGAAGCACTTGAAAGATATCGCTCCAAAGAAAGCCTGGTC ATTCAACACATTCGAAGGACAGTACTTGGTTGCTCACGAGAAAGGAAAAA AACACGAAAAGTTTGCCTTGAATTATGGACAATTCTGGAAAGCCACCAAA CCTCACATTCCCAATTTCGTGGAAAAAGTCTTAATCACTGAGGATGTACG TTCCAAAGATGCAAAACAACCGGTGACTGTCAAGTTTGTCAACAAAACAA CTTCAAAGGTTAAACTTTACTGGATTGACTACAAAGGAAAATTTAAAAAG TCTGGCAAAATAAAGGAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGG TCACAAATTCATGGTGGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACG GGAATGAAATGTTTATTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTG AAAGCAGACATCACACATGGTCCAAGGATTCGATTCTGTTGATTCAGACC CAGAGGATTAGTCATGGACCACAGCCTATGGCTCCAGGAGGACAACCGAT TTAGATGACAGCTCTTCTTCAAGCAGCTCCGACTAAAAGACATTAAAAAC TTACGATCTGCTCAAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCG TACACATTCATACGCTACCCTTGAACTTATCGATCAAAGCGGTCACACGA AGCACTTGAAAGATATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTC GAAGGACAGTACTTGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTT TGCCTTGAATTATGGACAATTCTGGAAAGCCACCAAACCTCACATTCCCA ATTTCGTGGAAAAAGTCTTAATCACTGAGGATGTACGTTCCAAAGATGCA AAACAACCGGTGACTGTCAAGTTTGTCAACAAAACAACTTCAAAGGTTAA ACTTTACTGGATTGACTACAAAGGAAAATTTAAAAAGTCTGGCAAAATAA AGGAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGGTCACAAATTCATG GTGGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACGGGAATGAAATGTT TATTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTGAAAGCAGACATCA CACATGGTCCAAGGATTCGATTCTGTTGATTCAGACCCAGAGGATTAGTC ATGGACCACAGCCTATGGCTCCAGGAGGACAACCGATTTAGATGACAGCT CTTCTTCAAGCAGCTCCGACTAAAAGACATTAAAAACTTACGATCTGCTC AAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCGTACACATTCATAC GCTACCCTTGAACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAAGA TATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTACT TGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATTAT GGACAATTCTGGAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAAAA AGTCTTAATCACTGAGGATGTACGTTCCAAAGATGCAAAACAACCGGTGA CTGTCAAGTTTGTCAACAAAACAACTTCAAAGGTTAAACTTTACTGGATT GACTACAAAGGAAAATTTAAAAAGTCTGGCAAAATAAAGGAAGGTCGAGT TGAGGTGGTTGACAGCTATGAAGGTCACAAATTCATGGTGGAAGGCAAGA AAAGTTCAGACCCGGTTATCAACGGGAATGAAATGTTTATTGTTCGCACT GGTCATGGAAGCCATGGAGAAGTGAAAGCAGACATCACACATGGTCCAAG GATTCGATTCTGTTGATTCAGACCCAGAGGATTAGTCATGGACCACAGCC TATGGCTCCAGGAGGACAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00012434-exon-sc0000144-1575043694:18895..18985 | TCONS_00012434-exon-sc0000144-1575043694:18895..18985 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1575043694:18635..18652 | TCONS_00012434-exon-sc0000144-1575043694:18635..18652 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1575043694:18488..18521 | TCONS_00012434-exon-sc0000144-1575043694:18488..18521 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1575043694:18092..18373 | TCONS_00012434-exon-sc0000144-1575043694:18092..18373 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1575043694:16079..16372 | TCONS_00012434-exon-sc0000144-1575043694:16079..16372 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1575043694:15680..15900 | TCONS_00012434-exon-sc0000144-1575043694:15680..15900 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:18895..18985 | TCONS_00012434-exon-sc0000144-1510915933:18895..18985 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:18635..18652 | TCONS_00012434-exon-sc0000144-1510915933:18635..18652 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:18488..18521 | TCONS_00012434-exon-sc0000144-1510915933:18488..18521 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:18092..18373 | TCONS_00012434-exon-sc0000144-1510915933:18092..18373 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:16079..16372 | TCONS_00012434-exon-sc0000144-1510915933:16079..16372 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1510915933:15680..15900 | TCONS_00012434-exon-sc0000144-1510915933:15680..15900 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:18895..18985 | TCONS_00012434-exon-sc0000144-1491911889:18895..18985 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:18635..18652 | TCONS_00012434-exon-sc0000144-1491911889:18635..18652 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:18488..18521 | TCONS_00012434-exon-sc0000144-1491911889:18488..18521 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:18092..18373 | TCONS_00012434-exon-sc0000144-1491911889:18092..18373 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:16079..16372 | TCONS_00012434-exon-sc0000144-1491911889:16079..16372 | Clytia hemisphaerica | exon |
TCONS_00012434-exon-sc0000144-1491911889:15680..15900 | TCONS_00012434-exon-sc0000144-1491911889:15680..15900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000144 | supercontig | sc0000144:15680..18985 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR024053 | VHL_beta_dom |
IPR022772 | VHL_tumour_suppress_b/a_dom |
Blast
The following BLAST results are available for this feature:
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