|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012436 ID=TCONS_00012436|Name=TCONS_00012436|organism=Clytia hemisphaerica|type=transcript|length=2304bpRun BLAST on NCBI protein sequence of TCONS_00012436-protein >TCONS_00012436-protein ID=TCONS_00012436-protein|Name=TCONS_00012436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp MMNHGIETETPSIAGNVPAFLVKLWRIVGDESLDSIISWSQNGQTFKVHDRun BLAST on NCBI transcript from alignment at sc0000144:39650..46344- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012436 ID=TCONS_00012436|Name=TCONS_00012436|organism=Clytia hemisphaerica|type=transcript|length=6695bp|location=Sequence derived from alignment at sc0000144:39650..46344- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:39650..46344- >TCONS_00012436 ID=TCONS_00012436|Name=TCONS_00012436|organism=Clytia hemisphaerica|type=CDS|length=23088bp|location=Sequence derived from alignment at sc0000144:39650..46344- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012436 vs. Swiss-Prot (Human)
Match: HSF1 (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.240e-51 Identity = 95/195 (48.72%), Postives = 129/195 (66.15%), Query Frame = 1
Query: 79 PSIAG--NVPAFLVKLWRIVGDESLDSIISWSQNGQTFKVHDQTAFAKDILPKYYKHSNFSSFVRQVNMYGFRKIVDAQSGSL-RHDKDEWEFFHQSFQQNKPELLAEIKRKASN----KESDAKSNQ--ISSLLTEVERLKLQHETVASKLENMKSENEMLWAEVGDLRDQHRDQQTVINKLIQVFVKIVMSNK 636
P AG NVPAFL KLW +V D D++I WS +G +F V DQ FAK++LPKY+KH+N +SFVRQ+NMYGFRK+V + G L + ++D+ EF H F + + +LL IKRK ++ K D K Q ++ LLT+V+ +K + E + SKL MK ENE LW EV LR +H QQ V+NKLIQ + +V SN+
Sbjct: 7 PGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNR 201 The following BLAST results are available for this feature:
BLAST of TCONS_00012436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.