TCONS_00012437 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012437
Unique Name	TCONS_00012437
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1731

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000144:40680..46344-

transcript sequence

>TCONS_00012437 ID=TCONS_00012437|Name=TCONS_00012437|organism=Clytia hemisphaerica|type=transcript|length=1731bp
CACAGAATAGAAAAAAAGTAACATTTAGGAAAAATTAAGGAAATAAAGAT
GATGAATCATGGTATTGAAACCGAAACACCATCAATTGCTGGCAATGTTC
CTGCCTTCTTGGTGAAGTTGTGGCGTATTGTTGGAGATGAATCATTAGAC
TCGATCATCTCTTGGAGTCAGAATGGTCAGACATTCAAGGTTCACGATCA
AACTGCATTTGCAAAAGATATTTTGCCCAAATATTATAAGCATAGCAATT
TCTCCAGCTTTGTACGTCAAGTGAACATGTACGGCTTTCGAAAGATCGTA
GATGCACAAAGTGGTAGTCTGAGACACGATAAGGACGAATGGGAGTTCTT
CCATCAATCTTTCCAACAAAACAAACCGGAACTGCTGGCAGAAATCAAAA
GAAAGGCTTCCAATAAAGAAAGTGATGCAAAATCCAACCAAATTTCATCT
CTTTTGACTGAAGTTGAACGATTGAAACTGCAACACGAAACGGTTGCAAG
CAAGCTAGAAAATATGAAAAGTGAAAATGAAATGTTATGGGCTGAAGTAG
GAGATTTGAGAGATCAACATCGAGATCAACAAACCGTTATCAATAAGCTT
ATCCAAGTCTTCGTGAAGATTGTAATGTCCAACAAGAAAGATAGAGGGGG
AAATAAAAGGCGAGCACTGGACTTTCCTGCAGCACTGGATAACAAACACG
CCAAAATGACTCAAGATCTCCTACCCTATTCATCTAGTACAAATCAAAAT
ATATATCCAAGTTTATCGCCAGATCGAATGTATTCCGTTGAGTCGCCTGG
TTCACCGTATCCGATCACTGAAGTTCCCACTCCAACCAATGCTTCACATT
TTGACAATTCTATGATATCGGTGATTGATGATTCACCAATGCCTCTGGTA
GAAGAAATAGACAACAGCTCATCAACCACCAACCCTATATCCAATATTTC
TTTTCCCTCTAATGGAAAACAACCGCTCGTTGTCAAAAGTGAAGGAAAGA
CGATCACTATCGTGCCCAACCAACCTTCAGCTGTGAGCAACATGCAGATG
ACGGCACCACAAATGAAATCGGAATCAGATTTTGCTTTTCCAGAGAAATA
CAATGGACTGTCTGCAACCAGCAAGTGTTTGAACACAGATATGTCACAGA
TGGGCTTTGAAGTTATCAAATGTATGTCCAAAGACAATCCATCCAACCAT
TGTTCCGGAGTGAGCAGTGGTGATTGTTCAGTGATTCCAGCTGACGAAGA
CATCATTACAGTGGTCCCCAATGTTTCCACATCATCGTCAGAACCCTTCC
TTTCAACACCTGACACTTTACTCCCTCCAGCTCTTAACAACACGCCACGC
AAACATGCACTCCCACAAAAGTTTCAGCAACAAAAAGAAGCTCACCCAGT
GACGTCAGAAATGAGTTTGGTCCCTGTTGCTCCAATCTTAAAAATGCCGC
CTTCGGGTCGATTATACTCCAGACAAAGAAGCTACAAAGACAAGCAAGAG
CTCAATGAGAACGTCCAAAATATCGGTCGAAGCATCGAGATGTTACAAGG
TCTTCTTGAAAGCCAGCCTGTCAATATTGATGTCAAAAGTCTAAATttaG
ACTTTCTGCCAGAAAACATGACAATACAGgaCGTTGCAAAGCTAGTGGAG
AGTGGAGGTGCCAACCTGACAGTGAATGCTATTACTGAAGGGcccaatca
aaacaacaaagACGACTCCTCACCTGTATCG

Run BLAST on NCBI

transcript from alignment at sc0000144:40680..46344-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012437 ID=TCONS_00012437|Name=TCONS_00012437|organism=Clytia hemisphaerica|type=transcript|length=5665bp|location=Sequence derived from alignment at sc0000144:40680..46344- (Clytia hemisphaerica)
CACAGAATAGAAAAAAAGTAACATTTAGGAAAAATTAAGGAAATAAAGAT
GATGAATCATGGTATTGAAACCGAAACACCATCAATTGCTGGCAATGTTC
CTGCCTTCTTGGTGAAGTTGTGGCGTATTGTTGGAGATGAATCATTAGAC
TCGATCATCTCTTGGAGTCAGGTATATTTAACTTGTTTTTGTACTGCTTA
CTATACTTATGAAATTCTTAATCGGCCTTAGCTACAAGGATTCTCCAAGC
ACTTCTCCCTCCATTTACCTCCAGAGATTAAGTTTTAATACAATTGCAAA
TATTGAGATATCACTCATAATTTTTGGCGTGAAGGAGAAAGAGTCTTCAG
GGATTTTTGGGATTTTAGGGATTTTTCAAGCACTTTTCCTTATCACTATC
TTACCTCAGAAATTGAGTTTTAATCATTCATTGATAAACTGTTGATTAAA
TTGTTTTCAATTCGCTACCTTAATTTAAAAGGGGCCTAAGTCCAGGTACC
CCCCCCCCCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCAGTTCAAAAGGGGCCTTTT
TATGAAATTTGAGATCTTTGGTTTTTCTCAATCTCTGACTCATTCTGGCT
CATTTGCTCTCTTTTGATGTACACAACAAGTAGTTTTTAAAGTTAAAAAG
GCTCAAAACTTCATACTGAAGCTCTGTTTAATTCAAAACAGGCCAAAAGT
CCATCATCTTTTTACAATAAAAGGGCCTAAGTCTACCAAAATAAGTTTGT
TAAGTTTTGAAGAGACCATGCATCCTAAAAAGTTTAATTATTGAGTTTTT
CTTTATTTTACTGAGATTGTCTTTTCTCTTCATCTTGAGTCTAGATGTAA
GTGGCTTTATTTTGGAATGTCATATGTGCAGGTTTTGAACTTTAAAAGCC
AGAAATTAACCCTCTCACGTTTTTCAAAATTCATGTTTAATCTGGTTTAA
TTCAAAAAAGGCCTAAGTCCACTCTGCAAGATTTACTAAGTTGCACCTGT
TACGTACAAAAATATCTACTTTCCAAACGAATACCTTTCTATTGGAAAAA
CAACTTATAGCTATGGCTTTTAGAAAACATTTATTACTTCAAAGCTTTAC
CATCAAAAATGGTTTCGTACTAGTTATTGCATGAGTGCAATACGAGAAAT
ATTTGAGTTCCAAGATTTTTCTGTAATAGCGAGCCTATTGGCGAGGAAAA
ATATCGGTAAAATCTCGGATCGAGTAAAATCTCGAGTATTGCACGAAAAG
TCATGTGAATCAAAAGAATCAAGGAAAAACTTTAATTGCAATTTTCTCAA
AATGACCAAAATGGACTTAGGCCCCTTTTGAATTAAGGTAGCGAATTATA
CTCTATACTTTCTACCATAAAAAATGCTTAAAAGTAAATATTGCTTCCCT
TTTTGTTATAGAATGGTCAGACATTCAAGGTTCACGATCAAACTGCATTT
GCAAAAGATATTTTGCCCAAATATTATAAGCATAGCAATTTCTCCAGCTT
TGTACGTCAAGTGAACATGTGTAAGTAGGCCCATCCTTTCCATCCTCGTG
TTTGTGATTCTGTTTGCAAGTAAAAATACTTTTCTGAATTATTTGAGTGA
TATTTTGATCACTTTTGAAGCCTCTTATCTTCGATAAAAGATATTCTCCA
ATTCTTCTTACTTTCAGACGGCTTTCGAAAGATCGTAGATGCACAAAGTG
GTAGTCTGAGACACGATAAGGACGAATGGGAGTTCTTCCATCAATCTTTC
CAACAAAACAAACCGGAACTGCTGGCAGAAATCAAAAGAAAGGTATGCAA
AAAATGATTTCTTTTTATTTTGGAATAAACTAACAGTAACAAGACTGGTT
TCTCGATAGATTTTACAAGTTCATTCCTGCTTCTTATTTTTCGGCTATGC
CCTACTTCATTTTTCTGTAATTAATTTAGAATCGTTTTTATTTTGGTGTT
ATTTGTTGTAGGCTTCCAATAAAGAAAGTGATGCAAAATCCAACCAAATT
TCATCTCTTTTGACTGAAGTTGAACGATTGAAACTGCAACACGAAACGGT
TGCAAGCAAGCTAGAAAATATGAAAAGGTAAACATTCATTTATGCTATCT
ACAAGCTATTTGGTAACTTTGTTTTTTTAGCTGAATATCAAATTCATCCC
GAAGTTTTGAACACTCTACATTCTAAATCTTAAAGGTTTAGACAGGATTA
GTCCCCTCACGGACTTTTATGAACCCCAAGTAAAAGGGGTTAGTCTAATT
TTTTAAGAGGAACTATTGTATAATAAGATTTACTTTTCATTTAGTGAAAA
TGAAATGTTATGGGCTGAAGTAGGAGATTTGAGAGATCAACATCGAGATC
AACAAACCGTTATCAATAAGGTAACGGATATTCATTTCAATTGCTTCGCA
GATAGAAACAACAACTATTTCTTCGTATATTTTCAGCTCCACTTATCTTA
GGGGTTGAGATTGAAGAGGTAGTATTGCTTGTTCATTTGCTTATTAAATA
CTTGAATACTCAGGACCAAATTATGCATGTGCATCTACGATGAAGTGAGT
TAAAGTGAAGAAGAAGCTCACTTCAGGCACAATAATTTGAAGTCTTTATC
TTGAGTTTGACCTTTTTTAATGGAAATCGGAAACGAGCTTTCTTATTACA
TTGAGGTTTACAAAGCAATTCAATTTCTTTCAGCTTATCCAAGTCTTCGT
GAAGATTGTAATGTCCAACAAGAAAGATAGAGGGGGAAATAAAAGGTATC
AATTATTGCTCATTCTGATACCGTTATTTCAGCTGTTTTACGACCGATTA
AAAAATTATTAACAAATTATTCCGATTAAAAACCGGATAATTTTAGTTAT
TTCCGTTCTCTGTTATCGAGTAAATTTTCTACATTTCCTCTTGCAGGATA
TCAAAAGGCCTCATTTTGTATACAATGGCTTTAAATTAGTAAAAAATTTA
AACTCGATCCTTGTTTTGAGCTCGATTTTCCTGTCTATGGAGTTTAAATC
AATGTTCGAAATATACTCTTTTTTCCGTAAACTTTGCGAATTTTTATTAA
ATAATATTCATCGAAATGTAGTTTACCTCCGTATTCTTCTAATTACCATA
TGCTTGTTTATGTGTTCTATAGTCGAAGATAATTCTCCAATTTAGGCGAG
CACTGGACTTTCCTGCAGCACTGGATAACAAACACGCCAAAATGACTCAA
GATCTCCTACCCTATTCATCTAGTACAAATCAAAATATATATCCAAGTTT
ATCGCCAGATCGAATGTATTCCGTTGAGTCGGTAAGAATGCCCGCTAATG
ATGGTTTAAAAAAATTACAAAAAAGTACCGAGGCACTTTTAGCTTACTGC
ATTTACTGTTGTTAGACGAAAACCGAAAATGGCATCCTCAAAGTAGACAT
CATGTTTAGCAGCACCACATCACCGATGTAAATTATAATGTATCTCTGTA
GTACTGGGGTGCATAAATAAGAGTGACGGTATTGTTACTGTAAAAGTGAT
CTTCACTTTTTGTAAATTTTCCTTAGCCTGGTTCACCGTATCCGATCACT
GAAGTTCCCACTCCAACCAATGCTTCACATTTTGACAGTGAGTTTCAATT
CCTCGATAAAATTCGACTGATTTTTGCTGGGTTAAGTTGATCCTTGTGTC
TTTCAATTATATCAAATCGTCTTACGGGTCCAACCCATTTGAAATTGAAT
ATTGAAATTAAATTTCAAAACTTCAATTAAAGCCGACTTCGTGTTTGCAT
TTTGCCGATTACTCTACTTGGTAATTTATGCCAGAAGATATTCAAATTTG
ATATTCAACATTTTTTCCGATCTCAACCTTCGCATGAAAGTTCATCGCTT
CTTTTTTCTCAGATTCTATGATATCGGTGATTGATGATTCACCAATGCCT
CTGGTAGAAGAAATAGACAACAGCTCATCAACCACCAACCCTATATCCAA
TATTTCTTTTCCCTCTAATGGAAAACAACCGCTCGTTGTCAAAAGTGAAG
GAAAGACGATCACTATCGTGCCCAACCAACCTTCAGCTGTGAGCAACATG
CAGATGACGGCACCACAAATGAAATCGGAATCAGATTTTGCTTTTCCAGA
GAAATACAATGGACTGTCTGCAACCAGCAAGTGTTTGAACACAGATATGT
CACAGATGGGCTTTGAAGTTATCAAATGTATGTCCAAAGACAATCCATCC
AACCATTGTTCCGGAGTGAGCAGTGGTGATTGTTCAGTGATTCCAGCTGA
CGAAGACATCATTACAGTGGTCCCCAATGTTTCCACATCATCGTCAGAAC
CCTTCCTTTCAACACCTGACACTTTACTCCCTCCAGCTCTTAACAACACG
CCACGCAAACATGCACTCCCACAAAAGTTTCAGCAACAAAAAGAAGCTCA
CCCAGTGACGTCAGAAATGAGTTTGGTCCCTGTTGCTCCAATCTTAAAAA
TGCCGCCTTCGGGTCGATTATACTCCAGACAAAGAAGCTACAAAGACAAG
TATATTAATACTCCGAGTTTCAATACACGTAGCCAATTTTCAATGAAAGA
TTGTTATTATTGACCTCTCAATATTCTACCACCTCATTAATTATCCAGAA
CTACATACGAGGAGTTGTCGATAAAGCACCCTTCGAGTAGTCTTACCATA
GTTAATGTTTAGTTAGCGGAGTCTGATTTCATCTTCTGATTTCAAGATTT
AACAATTTCTCTTTTTCTCTAGGCAAGAGCTCAATGAGAACGTCCAAAAT
ATCGGTCGAAGCATCGAGATGTTACAAGGTCTTCTTGAAAGCCAGCCTGT
CAATATTGATGTCAAAAGTCTAAATGTAAGAGTGCTCTATAATGCTGTTA
AGTATGCACATCTTTTTTATTTAATGTGGAATGAGTCTATTGGTCATATT
TCTTTGGTGGCTAATTGCATGTTCACCAGAAACGATCACCATTCGTATGG
AAAGATTATAAATCTCCTATCTTCCTTGTGAAATTCAAGGCCAACTTTTT
GACACATCCTTGAGTCTTTCATGAATAATTTGATGCCGTGTTTGAAATTA
TTTCTTTTTGTTTTCTTTTTTTTTTAGTTAGACTTTCTGCCAGAAAACAT
GACAATACAGGTGAGCTTATTGTTTCGTATCTTCATGCCTTCTATTTGTC
TTATCAAAAAAGAAACTGAAGTTGTATATGATTTTTAATTTTTGATAATC
ACACGGTATCATTCATAACATTACTGGCTTTGTCCACAATTTGTGGGTTG
GAGCTTTACCAGTTGCTTTTTCATCATTTTGTTAACCGATTTCTATGACT
ATGAGATAGGAACAGACAATTTTAATGTCCGGTTTATTCTAACAAACTAG
AAACTTGATTTCTTTTTTCTTCAGGACGTTGCAAAGCTAGTGGAGAGTGG
AGGTGCCAACCTGACAGTGAATGCTATTACTGAAGGGCCCAATCAAAACA
ACAAAGGTATGTTAATTTTACTGATACTCTTAGAGAACAATACAGTTGGC
ACTATACACACTTCAACCACACTGACTGACAATTTTCACGTTTAGACGAC
TCCTCACCTGTATCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006984	XLOC_006984	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000144	supercontig	sc0000144:40680..46344 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.254204	3.91935e-09	6.16505e-10	2.60726	0.0231283	8.7725	0.0497427	1.94392	0.805529	2.26441	2.88578	1.55395	1.06869	1.21885	1.80505	2.76027	0	0.951651	8.00546e-09	0	0	0	3.80299	1.75257	0	1.21721e-06	4.55756e-08	0

Blast

[Close]

BLAST of TCONS_00012437 vs. Swiss-Prot (Human)
Match: HSF1 (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.143e-52
Identity = 95/195 (48.72%), Postives = 129/195 (66.15%), Query Frame = 1

Query:   79 PSIAG--NVPAFLVKLWRIVGDESLDSIISWSQNGQTFKVHDQTAFAKDILPKYYKHSNFSSFVRQVNMYGFRKIVDAQSGSL-RHDKDEWEFFHQSFQQNKPELLAEIKRKASN----KESDAKSNQ--ISSLLTEVERLKLQHETVASKLENMKSENEMLWAEVGDLRDQHRDQQTVINKLIQVFVKIVMSNK 636
            P  AG  NVPAFL KLW +V D   D++I WS +G +F V DQ  FAK++LPKY+KH+N +SFVRQ+NMYGFRK+V  + G L + ++D+ EF H  F + + +LL  IKRK ++    K  D K  Q  ++ LLT+V+ +K + E + SKL  MK ENE LW EV  LR +H  QQ V+NKLIQ  + +V SN+
Sbjct:    7 PGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNR 201

The following BLAST results are available for this feature:

BLAST of TCONS_00012437 vs. Swiss-Prot (Human)

BLAST of TCONS_00012437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HSF1	6.143e-52	48.72	Heat shock factor protein 1 OS=Homo sapiens GN=HSF...	[more]

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TCONS_00012437 (transcript) - C. hemisphaerica