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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012439 ID=TCONS_00012439|Name=TCONS_00012439|organism=Clytia hemisphaerica|type=transcript|length=1188bpRun BLAST on NCBI protein sequence of TCONS_00012439-protein >TCONS_00012439-protein ID=TCONS_00012439-protein|Name=TCONS_00012439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp MLLAAIKQPIKRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYRun BLAST on NCBI transcript from alignment at sc0000144:66943..68182- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012439 ID=TCONS_00012439|Name=TCONS_00012439|organism=Clytia hemisphaerica|type=transcript|length=1240bp|location=Sequence derived from alignment at sc0000144:66943..68182- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:66943..68182- >TCONS_00012439 ID=TCONS_00012439|Name=TCONS_00012439|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000144:66943..68182- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012439 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 142.51 bits (358), Expect = 1.004e-36 Identity = 105/272 (38.60%), Postives = 127/272 (46.69%), Query Frame = 2
Query: 197 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDT-GTCFSIETLQKSSCNPHDETPRERRIISTDKPTITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 1003
K YKC C K F S H R HTGEKPF C +C K +SQ+S+ Q H++ H G EK +KC++C K F + LH H H +KPY C C K F +S LQ H HT F+ C KRF QA+HL H E +P C DT G FS Q+S+ H +II T + K KC C KEF + +GL H RVHTGEKP+ CQ CGK FSQA H H H
Sbjct: 485 KPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTG---EKPYKCEVCGKRFNWSLNLHNHQRVHTG-EKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE--KPYKC---------DTCGKAFS----QRSNLQVH-------QIIHTGE-------------------------KPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVH 705 HSP 2 Score: 131.724 bits (330), Expect = 5.715e-33 Identity = 105/289 (36.33%), Postives = 135/289 (46.71%), Query Frame = 2
Query: 197 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDC---------ISNFESNP-VDTGT----CFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 1003
K Y+C SC K F + L H R HTGEKP+ C +C K ++Q SHLQ HE+ H G EK +KC C K F S LH H H + +KPY C+ C K F S L H R HT ++ C K F A+ H E +P C S F+++ V TG C S N H+ +R+ + +KP + FS N + E P KC CQK F S LQ H RVHTGEKP+ C CGK FSQ +++ H + H
Sbjct: 373 KPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTG---EKPYKCGDCGKRFSCSSNLHTHQRVHTE-EKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE--KPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHN----HQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKP--FKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIH 649 HSP 3 Score: 127.102 bits (318), Expect = 2.029e-31 Identity = 101/293 (34.47%), Postives = 140/293 (47.78%), Query Frame = 2
Query: 155 DTSVMLLAAIKQPI----KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDTGTCFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 1003
DTS ++Q + KRY C C K F S L H R HTGEKP++C C K ++Q+SHL H H G EK ++C C K F ++L+ H H +KPY C +C K F S LQ H R HT ++ C KRF +++L H +E +P C + G CFS+ S N H +R+ + +KP + FSS + + E P +C VC K F S Q H RVHTGEKP+ C++CGK F+ + ++ H H
Sbjct: 299 DTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTG---EKPYRCDSCGKGFSRSTDLNIHCRVHTG-EKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEE--KPYKCD--------ECGKCFSL------SFNLHS----HQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKP--FRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVH 565 HSP 4 Score: 109.768 bits (273), Expect = 7.551e-26 Identity = 94/288 (32.64%), Postives = 133/288 (46.18%), Query Frame = 2
Query: 158 TSVMLLAAIKQPIKRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHTPS--FEGPRCDKRFEQANHLGEHNCGGKKELVQPVDCISNFESNPVDTGTCFSIETLQKSSCNPHDETPRERRIISTDKP----TITQYFSSGMNPKHEDPNIKSENPKTHKCTVCQKEFQYMSGLQRHLRVHTGEKPFACQICGKTFSQAPHVRKHLLTH 1003
+S+ L + K CS+ +K Y SG+ TG+K + C C K +SQ+S+LQ H++ H G EK + C C K+F S L+ H+ H +KPY C+ C K F S+ L H R HT ++ C K F Q +HL H E + + P G C ++ SC+ + T +R+ + +KP + FS N E P +KC C K F S Q H RVHTGEKPF C +CGK FSQ+ + + H H
Sbjct: 276 SSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTG---EKPYTCHECGKSFNQSSHLYAHLPIHTG-EKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAH------ERIHTGE-------KPYKCGDCG-----KRFSCSSNLHT--HQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKP--YKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVH 537 HSP 5 Score: 83.9593 bits (206), Expect = 2.651e-17 Identity = 50/114 (43.86%), Postives = 61/114 (53.51%), Query Frame = 2
Query: 197 KRYKCSSCDKAFEYPSGLTRHLRSHTGEKPFSCLICNKEYSQASHLQKHEKSHFGNPTEKHFKCQLCHKTFYYPSELHKHINTHDKMDKPYPCNICPKRFKFSSALQRHMRSHT 538
K YKC +C KAF S L H HTGEKPF C C KE+S ++ L H++ H G EK + CQ C K F S H H H ++PY C++C K F S L H R HT
Sbjct: 625 KPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTG---EKPYTCQQCGKGFSQASHFHTHQRVHTG-ERPYICDVCCKGFSQRSHLIYHQRVHT 734 The following BLAST results are available for this feature:
BLAST of TCONS_00012439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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