TCONS_00012444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012444
Unique NameTCONS_00012444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012444 ID=TCONS_00012444|Name=TCONS_00012444|organism=Clytia hemisphaerica|type=transcript|length=674bp
TTGAATTCAAGTTCTGGTAGTAAGCTGCTGCTATAGGGTTTCAGGGTCTG
gattaaaaacaattatattgtTTGAAAGAGTAGATTGACGAAAAAAACCT
CAACGTCATCAAAGTACACATTATGCTTTTAAAAGAGCGtaatttgtttt
aaaacaaaaaacagtTCCTTCTCCAAAACGTCTACTAAATCCACTTTCta
ccattttttcattttgtttttcagcGTGTTATGGCTTTGGGAACTTTTCT
AACGATAGCAATTGGTTGCTCAAATAACAAAGGTCCGAACAACAGTTTAA
CACACGACTTAACGAAAATGGTTTGTCCGATGACGCCTGAAAACCATGGa
gcACACAGAGGCAGCAAAGTTTACAAGCAAGTTTGTTCAACGTGTCATTC
TTGATCATTCATgtcattttgtttatttatgaCCGGGAAAATTTACCGAT
GGCCTAAAATCAGCGAAAACTGCCCCCGCCCCCCGCCAAGGATTTATGTT
CTTGAAAACTAGGCTCCACTATTTTAAATGTATATTTAATCAAGGTTCTT
TTattatttaataaatatttattttcattaaatttctttaacttcaattt
tgtgcAACGGCCAACTAACCAAGTGAAAGATCTCTAAAACAATTTTTCTA
ATCGCTAGAAAGGTTACAAACCGC
Run BLAST on NCBI

transcript from alignment at sc0000144:96287..97854-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012444 ID=TCONS_00012444|Name=TCONS_00012444|organism=Clytia hemisphaerica|type=transcript|length=1568bp|location=Sequence derived from alignment at sc0000144:96287..97854- (Clytia hemisphaerica)
TTGAATTCAAGTTCTGGTAGTAAGCTGCTGCTATAGGGTTTCAGGGTCTG
GATTAAAAACAATTATATTGTTTGAAAGAGTAGATTGACGAAAAAAACCT
CAACGTCATCAAAGTACACATTATGCTTTTAAAAGAGCGTAATTTGTTTT
AAAACAAAAAACAGTTCCTTCTCCAAAACGTCTACTAAATCCACTTTCTA
CCATTTTTTCATTTTGTTTTTCAGCGTGTTATGGCTTTGGGAACTTTTCT
AACGATAGCAATTGGTTGCTCAAATAACAAAGGTCCGAACAACAGTTTAA
CACACGACTTAACGAAAATGGTTTGTCCGATGACGCCTGAAAACCATGGG
TGAGTTTAAATGAAATATGCAAAATATACATAATCGTACATAATGGAGTT
TCTTGAGAGAGACTTGTTTTCAGTTATAAGAAAAATTCAATCAAGATCCA
TGTCTGTTGACATTAGCTCATAACTTGACAAGTATTTAGCAAATTTAGAA
AAGTTTGCCTTAACAAAAATATCTGACTCTTTCAAATAAAAGTATATCAG
AGGCCAATAATACTTTTTTACTCAATCGATATCAGCGAATTACATCATAG
TATCAAATCGTAAAACACCCTCCTAACGCGTTTTCTACTCTTTTCATTCC
CACACAGCTAAGAACTGTCAGTTGGACATTTCCAATTGGATTATCGATAA
TAAGTAATAGTAAAATCATTATGACATTGAGGGAAATTAGGGATTAATAC
CCCGAGTTTCATTTTAAAATACTTTGAAATAGCACCAACGAAGTGAGGAC
TTTTTCAAAGTATTTCAAATGATTCGAGGGGTATTAATCTTAATTTCGTC
TTATTTGTAAACTGCGTCTTGTTTGTGGCGGGACGGCGGAAAAGAGGGCG
TATTATCAGAAATTTTTGATGGGAGCGGGGTATTACAAATCAAGCGGGTA
TTACAAAATAATACTCCTCCGTAGGATAAGAGCGCTCAACCTAAATAAAA
TCAGTCATATAATTATTAAGGAAATAGCATCAGACAACTGTTTCTATGCA
CGTTAAGACGTCCGATCAGTCATTCCAGTCAATCCCTACCATAATTCTTC
CTCTAAAATTCTGAAACCTTCGAATATACTCGCTAATAAATAGAATTTTC
GTGGGACTGTGTTTTTCAATTTTATCACAGTGACTGTTTTTGGCACACTC
ACATTTAATCTCTCGATTTCTTTTCTCTCTTTCTTTTTTTCAGAGCACAC
AGAGGCAGCAAAGTTTACAAGCAAGTTTGTTCAACGTGTCATTCTTGATC
ATTCATGTCATTTTGTTTATTTATGACCGGGAAAATTTACCGATGGCCTA
AAATCAGCGAAAACTGCCCCCGCCCCCCGCCAAGGATTTATGTTCTTGAA
AACTAGGCTCCACTATTTTAAATGTATATTTAATCAAGGTTCTTTTATTA
TTTAATAAATATTTATTTTCATTAAATTTCTTTAACTTCAATTTTGTGCA
ACGGCCAACTAACCAAGTGAAAGATCTCTAAAACAATTTTTCTAATCGCT
AGAAAGGTTACAAACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006989XLOC_006989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012444-exon-sc0000144-1575043694:97506..97854TCONS_00012444-exon-sc0000144-1575043694:97506..97854Clytia hemisphaericaexon
TCONS_00012444-exon-sc0000144-1575043694:96287..96611TCONS_00012444-exon-sc0000144-1575043694:96287..96611Clytia hemisphaericaexon
TCONS_00012444-exon-sc0000144-1510915933:97506..97854TCONS_00012444-exon-sc0000144-1510915933:97506..97854Clytia hemisphaericaexon
TCONS_00012444-exon-sc0000144-1510915933:96287..96611TCONS_00012444-exon-sc0000144-1510915933:96287..96611Clytia hemisphaericaexon
TCONS_00012444-exon-sc0000144-1491911889:97506..97854TCONS_00012444-exon-sc0000144-1491911889:97506..97854Clytia hemisphaericaexon
TCONS_00012444-exon-sc0000144-1491911889:96287..96611TCONS_00012444-exon-sc0000144-1491911889:96287..96611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:96287..97854 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26768	0	0.445816	1.27942	2.81067	2.2469	0.317188	2.33307	1.27503	1.14644	0.962848	0.181251	1.02231	0.478394	0.84549	1.13652	8.13082	5.46214	0.823141	0.553669	2.21781	3.38818	1.8193	3.0472	7.26896	6.22852	55.6089	33.9572	0.358534	0.450048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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