TCONS_00012452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012452
Unique NameTCONS_00012452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012452 ID=TCONS_00012452|Name=TCONS_00012452|organism=Clytia hemisphaerica|type=transcript|length=1731bp
TGGAGATATTCAAATAGAGAAGTGGCAGAAGTATTTGGTTATCAATTTTC
GTTATGTTATCTGCCGCACGGAAACTAACACAACAACGTCAATCGATTTT
ATGGAAAAGGAATGACCTCAAGCTAATTTCACCAGAAATCTTTGGAGAGT
TCAATACGGGGATCCCGCTGATTTCGAGCGTCAAGAATGGTGACCAACCC
ACTAAGATTGAATCGACTGTAGCATGTCGGTGCTTGAATCGAGTTTCTGC
TCTCAAAAAAGACCATGCAGACGAAGAAGATTCTAAGAAATCAAATTTCT
CTCATGAAatATGGTCGGATTCGTCCGTGCAAACCGATGAAACTGGTGGT
GTTGATGTAGAGCACCTGGAACACATGAATTCCATGAATGAAGTTCATGA
TAAGAAAATGTCTGCAATGGGTGACGACCTTAAATCcaagcaaaaaataa
tcaatCAGCTAAAAGCACAAATTGCTGAGAGTAATGATTTTCACAAAATC
GAAAATCTGAAgagggaaatcaaaaagaaagatGCTCAGTCGATTGCAGA
CCAGGCTGCAATCAATCAACTCAGAGAGCTCCTTAGAAGTAAAGACAgca
aaacaagcaaaaagaaaaacaagttgTCTAAAAAAGATAATCCCGTTAAG
AATACAGATGAGGGAATTTCTAGTTCAAATGGTGATAAATCAGAACAAGG
AGCTGTAGCAAAAAATGAAGTTATGAATAACTTGAAACAACAACTTTCAT
TTAAAGAGTCCCAGTTGGTATCATACAGGAATGAGATCAATTGCTTTACA
GAAACGATTGGAAAAAAGGATATGAAGCACAAAGAAGAGGTGGAATCCCT
GAAGAAGAAGATAGAGCATCTCAATAAACTTAATACGAAAGATCGTCTCA
ACACCCAAGCTCAAATCCAGGTATTGAACGAATCTTTCCAAGAAAACAAT
CAAACGATTCAATCCGTCCAAAAGGAGCTTGAACAATCGAAGAAAGACGC
CAACAAAGGGCTTCTTGAAAATCGGGAGCTAAGAGAGCGTCACGAAATCG
AGTGCAGACGTATGGATGAGGTGATCAAACATTTGAAGGAGATGAACGTC
TCCAAGGACCAGGCACTACAGACACTTGATTCAAAATTTAAGAGGCTTGG
ACGTAGGTCACAAGCGTATGAAATGAAACATCACGATTTTTGTGCTGATG
CCGAGCATCGCATTCAAACCCTCCAATCGGAGGTTACAAAACTTGGTCAA
TTACTTTCATgtgagaaagaagaaaaagaagctgCAAGAGAAGGGTTTCA
ACAGGAAGTGCTGGATCTCAAGAAATCCAACACAAATGTCAAATACGATG
CAGACATGGCTAAGCTGGATAATATCAAATTAAGAAAACAGACGGAGACC
ATGAAAAACGAAGTGGAAATGGACAAAATCAAGATCGCTTGTCTGAAAGC
AACCATCAGCCAGAACCAACTAAAATATCATAACTCAATGTCTCAAGCAG
GTCGACAAATTGATTTGCTGAAGATGAAAGTAGATATGCTGGAAGATGAG
AAGAAAGGTGAAATGGACTCAATGGACAAGCGCCTTGAATCGAAAAGAGT
CCAATGCGTTGTTCAAATAAACATGCTTGAAACTGCTGGAAAGATCGACG
ACGATCCAACATTAGAAGAAGAAGCGAACCTGACAGAAACTAGCGACGTT
ACAACAGCaggaattttgaagaaaacCGACT
Run BLAST on NCBI

protein sequence of TCONS_00012452-protein

>TCONS_00012452-protein ID=TCONS_00012452-protein|Name=TCONS_00012452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
MLSAARKLTQQRQSILWKRNDLKLISPEIFGEFNTGIPLISSVKNGDQPT
KIESTVACRCLNRVSALKKDHADEEDSKKSNFSHEIWSDSSVQTDETGGV
DVEHLEHMNSMNEVHDKKMSAMGDDLKSKQKIINQLKAQIAESNDFHKIE
NLKREIKKKDAQSIADQAAINQLRELLRSKDSKTSKKKNKLSKKDNPVKN
TDEGISSSNGDKSEQGAVAKNEVMNNLKQQLSFKESQLVSYRNEINCFTE
TIGKKDMKHKEEVESLKKKIEHLNKLNTKDRLNTQAQIQVLNESFQENNQ
TIQSVQKELEQSKKDANKGLLENRELRERHEIECRRMDEVIKHLKEMNVS
KDQALQTLDSKFKRLGRRSQAYEMKHHDFCADAEHRIQTLQSEVTKLGQL
LSCEKEEKEAAREGFQQEVLDLKKSNTNVKYDADMAKLDNIKLRKQTETM
KNEVEMDKIKIACLKATISQNQLKYHNSMSQAGRQIDLLKMKVDMLEDEK
KGEMDSMDKRLESKRVQCVVQINMLETAGKIDDDPTLEEEANLTETSDVT
TAGILKKTD
Run BLAST on NCBI

transcript from alignment at sc0000144:193062..195530-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012452 ID=TCONS_00012452|Name=TCONS_00012452|organism=Clytia hemisphaerica|type=transcript|length=2469bp|location=Sequence derived from alignment at sc0000144:193062..195530- (Clytia hemisphaerica)
TGGAGATATTCAAATAGAGAAGTGGCAGAAGTATTTGGTTATCAATTTTC
GTTATGTTATCTGCCGCACGGAAACTAACACAACAACGTCAATCGATTTT
ATGGAAAAGGAATGACCTCAAGCTAATTTCACCAGAAATCTTTGGAGAGT
TCAATACGGGGATCCCGCTGATTTCGAGCGTCAAGAATGGTGACCAACCC
ACTAAGATTGAATCGACTGTAGCATGTCGGTGCTTGAATCGAGTTTCTGC
TCTCAAAAAAGACCATGCAGACGAAGAAGATTCTAAGAAATCAAATTTCT
CTCATGAAGTAAGTACTGGCAAACTTTTTTTTGCAAAAAAAGCAATATCT
GCCATCTTTGATTGGAGTTTTTTTAGAATTGGTACCCAAGGAGAAGCCAT
TGCAATGCTAAAAATTAACGTCTAACGCCGCTACATCATCAAAAGAATTT
GAGGGAAAGTAGACCTAGCTCTCTCGATGCATTTACACCGCTATCGAGTA
GTCCCGACATTAGGGTATCAATTTTCAAAAAACTCCGATCAAAGATTTTG
CTTGGCTGGGATTGAGAAGCTTGGTCCAGGGTATATAAAGGTCAGTGGTT
GTATTTATACGCAAATTTAACAGGGCTGTTGCCATTAAGTTTAAAGCCCA
AAGGGCTAGAGACTAGAGTTGAATCTTTAACCTTTCCCGGGTAAGAAAAG
TGAAGCCACATATTTCCCATGGAAGTCAATCGTTGTTGCTTTCTTCGCAA
CTACAATTACAAACTAATTTGTATCACTATTGTATTGAACGTATCAATGA
ACCCCGGAAAGATATCCATTTTGAAATCACAATCAGCGATGCAGCCACAA
CACGTTTTCTTCAAAGCTTAAAGCTCAGTTCCTCAACTTTGTTATAAGAA
CGTACATTACAAATAGATGTGTGAAGGATTCCTAACTTGGTTATGTTAAG
TTAGAAATTAGAACAGGTTATAGTAAAATGTAGCATGGGAAAGTTTTGGG
GATACAAAAGGTCATATGAAAAACTCATAGTTTTGTTTCTTTTTAGATAT
GGTCGGATTCGTCCGTGCAAACCGATGAAACTGGTGGTGTTGATGTAGAG
CACCTGGAACACATGAATTCCATGAATGAAGTTCATGATAAGAAAATGTC
TGCAATGGGTGACGACCTTAAATCCAAGCAAAAAATAATCAATCAGCTAA
AAGCACAAATTGCTGAGAGTAATGATTTTCACAAAATCGAAAATCTGAAG
AGGGAAATCAAAAAGAAAGATGCTCAGTCGATTGCAGACCAGGCTGCAAT
CAATCAACTCAGAGAGCTCCTTAGAAGTAAAGACAGCAAAACAAGCAAAA
AGAAAAACAAGTTGTCTAAAAAAGATAATCCCGTTAAGAATACAGATGAG
GGAATTTCTAGTTCAAATGGTGATAAATCAGAACAAGGAGCTGTAGCAAA
AAATGAAGTTATGAATAACTTGAAACAACAACTTTCATTTAAAGAGTCCC
AGTTGGTATCATACAGGAATGAGATCAATTGCTTTACAGAAACGATTGGA
AAAAAGGATATGAAGCACAAAGAAGAGGTGGAATCCCTGAAGAAGAAGAT
AGAGCATCTCAATAAACTTAATACGAAAGATCGTCTCAACACCCAAGCTC
AAATCCAGGTATTGAACGAATCTTTCCAAGAAAACAATCAAACGATTCAA
TCCGTCCAAAAGGAGCTTGAACAATCGAAGAAAGACGCCAACAAAGGGCT
TCTTGAAAATCGGGAGCTAAGAGAGCGTCACGAAATCGAGTGCAGACGTA
TGGATGAGGTGATCAAACATTTGAAGGAGATGAACGTCTCCAAGGACCAG
GCACTACAGACACTTGATTCAAAATTTAAGAGGCTTGGACGTAGGTCACA
AGCGTATGAAATGAAACATCACGATTTTTGTGCTGATGCCGAGCATCGCA
TTCAAACCCTCCAATCGGAGGTTACAAAACTTGGTCAATTACTTTCATGT
GAGAAAGAAGAAAAAGAAGCTGCAAGAGAAGGGTTTCAACAGGAAGTGCT
GGATCTCAAGAAATCCAACACAAATGTCAAATACGATGCAGACATGGCTA
AGCTGGATAATATCAAATTAAGAAAACAGACGGAGACCATGAAAAACGAA
GTGGAAATGGACAAAATCAAGATCGCTTGTCTGAAAGCAACCATCAGCCA
GAACCAACTAAAATATCATAACTCAATGTCTCAAGCAGGTCGACAAATTG
ATTTGCTGAAGATGAAAGTAGATATGCTGGAAGATGAGAAGAAAGGTGAA
ATGGACTCAATGGACAAGCGCCTTGAATCGAAAAGAGTCCAATGCGTTGT
TCAAATAAACATGCTTGAAACTGCTGGAAAGATCGACGACGATCCAACAT
TAGAAGAAGAAGCGAACCTGACAGAAACTAGCGACGTTACAACAGCAGGA
ATTTTGAAGAAAACCGACT

Coding sequence (CDS) from alignment at sc0000144:193062..195530-

>TCONS_00012452 ID=TCONS_00012452|Name=TCONS_00012452|organism=Clytia hemisphaerica|type=CDS|length=3354bp|location=Sequence derived from alignment at sc0000144:193062..195530- (Clytia hemisphaerica)
ATATGGTCGGATTCGTCCGTGCAAACCGATGAAACTGGTGGTGTTGATGT
AGAGCACCTGGAACACATGAATTCCATGAATGAAGTTCATGATAAGAAAA
TGTCTGCAATGGGTGACGACCTTAAATCCAAGCAAAAAATAATCAATCAG
CTAAAAGCACAAATTGCTGAGAGTAATGATTTTCACAAAATCGAAAATCT
GAAGAGGGAAATCAAAAAGAAAGATGCTCAGTCGATTGCAGACCAGGCTG
CAATCAATCAACTCAGAGAGCTCCTTAGAAGTAAAGACAGCAAAACAAGC
AAAAAGAAAAACAAGTTGTCTAAAAAAGATAATCCCGTTAAGAATACAGA
TGAGGGAATTTCTAGTTCAAATGGTGATAAATCAGAACAAGGAGCTGTAG
CAAAAAATGAAGTTATGAATAACTTGAAACAACAACTTTCATTTAAAGAG
TCCCAGTTGGTATCATACAGGAATGAGATCAATTGCTTTACAGAAACGAT
TGGAAAAAAGGATATGAAGCACAAAGAAGAGGTGGAATCCCTGAAGAAGA
AGATAGAGCATCTCAATAAACTTAATACGAAAGATCGTCTCAACACCCAA
GCTCAAATCCAGGTATTGAACGAATCTTTCCAAGAAAACAATCAAACGAT
TCAATCCGTCCAAAAGGAGCTTGAACAATCGAAGAAAGACGCCAACAAAG
GGCTTCTTGAAAATCGGGAGCTAAGAGAGCGTCACGAAATCGAGTGCAGA
CGTATGGATGAGGTGATCAAACATTTGAAGGAGATGAACGTCTCCAAGGA
CCAGGCACTACAGACACTTGATTCAAAATTTAAGAGGCTTGGACGTAGGT
CACAAGCGTATGAAATGAAACATCACGATTTTTGTGCTGATGCCGAGCAT
CGCATTCAAACCCTCCAATCGGAGGTTACAAAACTTGGTCAATTACTTTC
ATGTGAGAAAGAAGAAAAAGAAGCTGCAAGAGAAGGGTTTCAACAGGAAG
TGCTGGATCTCAAGAAATCCAACACAAATGTCAAATACGATGCAGACATG
GCTAAGCTGGATAATATCAAATTAAGAAAACAGACGGAGACCATGAAAAA
CGAAGTGGAAATGGACAAAATCAAGATCGCTTGTCTGAAAGCAACCATCA
GCCAGAACCAACTAAAATATCATAACTCAATGTCTCAAGCAGGTCGACAA
ATTGATTTGCTGAAGATGAAAGTAGATATGCTGGAAGATGAGAAGAAAGG
TGAAATGGACTCAATGGACAAGCGCCTTGAATCGAAAAGAGTCCAATGCG
TTGTTCAAATAAACATGCTTGAAACTGCTGGAAAGATCGACGACGATCCA
ACATTAGAAGAAGAAGCGAACCTGACAGAAACTAGCGACGTTACAACAGC
AGGAATTTTGAAGAAAACCGACATGTTATCTGCCGCACGGAAACTAACAC
AACAACGTCAATCGATTTTATGGAAAAGGAATGACCTCAAGCTAATTTCA
CCAGAAATCTTTGGAGAGTTCAATACGGGGATCCCGCTGATTTCGAGCGT
CAAGAATGGTGACCAACCCACTAAGATTGAATCGACTGTAGCATGTCGGT
GCTTGAATCGAGTTTCTGCTCTCAAAAAAGACCATGCAGACGAAGAAGAT
TCTAAGAAATCAAATTTCTCTCATGAAATATGGTCGGATTCGTCCGTGCA
AACCGATGAAACTGGTGGTGTTGATGTAGAGCACCTGGAACACATGAATT
CCATGAATGAAGTTCATGATAAGAAAATGTCTGCAATGGGTGACGACCTT
AAATCCAAGCAAAAAATAATCAATCAGCTAAAAGCACAAATTGCTGAGAG
TAATGATTTTCACAAAATCGAAAATCTGAAGAGGGAAATCAAAAAGAAAG
ATGCTCAGTCGATTGCAGACCAGGCTGCAATCAATCAACTCAGAGAGCTC
CTTAGAAGTAAAGACAGCAAAACAAGCAAAAAGAAAAACAAGTTGTCTAA
AAAAGATAATCCCGTTAAGAATACAGATGAGGGAATTTCTAGTTCAAATG
GTGATAAATCAGAACAAGGAGCTGTAGCAAAAAATGAAGTTATGAATAAC
TTGAAACAACAACTTTCATTTAAAGAGTCCCAGTTGGTATCATACAGGAA
TGAGATCAATTGCTTTACAGAAACGATTGGAAAAAAGGATATGAAGCACA
AAGAAGAGGTGGAATCCCTGAAGAAGAAGATAGAGCATCTCAATAAACTT
AATACGAAAGATCGTCTCAACACCCAAGCTCAAATCCAGGTATTGAACGA
ATCTTTCCAAGAAAACAATCAAACGATTCAATCCGTCCAAAAGGAGCTTG
AACAATCGAAGAAAGACGCCAACAAAGGGCTTCTTGAAAATCGGGAGCTA
AGAGAGCGTCACGAAATCGAGTGCAGACGTATGGATGAGGTGATCAAACA
TTTGAAGGAGATGAACGTCTCCAAGGACCAGGCACTACAGACACTTGATT
CAAAATTTAAGAGGCTTGGACGTAGGTCACAAGCGTATGAAATGAAACAT
CACGATTTTTGTGCTGATGCCGAGCATCGCATTCAAACCCTCCAATCGGA
GGTTACAAAACTTGGTCAATTACTTTCATGTGAGAAAGAAGAAAAAGAAG
CTGCAAGAGAAGGGTTTCAACAGGAAGTGCTGGATCTCAAGAAATCCAAC
ACAAATGTCAAATACGATGCAGACATGGCTAAGCTGGATAATATCAAATT
AAGAAAACAGACGGAGACCATGAAAAACGAAGTGGAAATGGACAAAATCA
AGATCGCTTGTCTGAAAGCAACCATCAGCCAGAACCAACTAAAATATCAT
AACTCAATGTCTCAAGCAGGTCGACAAATTGATTTGCTGAAGATGAAAGT
AGATATGCTGGAAGATGAGAAGAAAGGTGAAATGGACTCAATGGACAAGC
GCCTTGAATCGAAAAGAGTCCAATGCGTTGTTCAAATAAACATGCTTGAA
ACTGCTGGAAAGATCGACGACGATCCAACATTAGAAGAAGAAGCGAACCT
GACAGAAACTAGCGACGTTACAACAGCAGGAATTTTGAAGAAAACCGACA
TGTTATCTGCCGCACGGAAACTAACACAACAACGTCAATCGATTTTATGG
AAAAGGAATGACCTCAAGCTAATTTCACCAGAAATCTTTGGAGAGTTCAA
TACGGGGATCCCGCTGATTTCGAGCGTCAAGAATGGTGACCAACCCACTA
AGATTGAATCGACTGTAGCATGTCGGTGCTTGAATCGAGTTTCTGCTCTC
AAAAAAGACCATGCAGACGAAGAAGATTCTAAGAAATCAAATTTCTCTCA
TGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006991XLOC_006991Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012452-proteinTCONS_00012452-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012452-exon-sc0000144-1575043694:195223..195530TCONS_00012452-exon-sc0000144-1575043694:195223..195530Clytia hemisphaericaexon
TCONS_00012452-exon-sc0000144-1575043694:193062..194484TCONS_00012452-exon-sc0000144-1575043694:193062..194484Clytia hemisphaericaexon
TCONS_00012452-exon-sc0000144-1510915933:195223..195530TCONS_00012452-exon-sc0000144-1510915933:195223..195530Clytia hemisphaericaexon
TCONS_00012452-exon-sc0000144-1510915933:193062..194484TCONS_00012452-exon-sc0000144-1510915933:193062..194484Clytia hemisphaericaexon
TCONS_00012452-exon-sc0000144-1491911889:195223..195530TCONS_00012452-exon-sc0000144-1491911889:195223..195530Clytia hemisphaericaexon
TCONS_00012452-exon-sc0000144-1491911889:193062..194484TCONS_00012452-exon-sc0000144-1491911889:193062..194484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:193062..195530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16317	0.0227309	0.0263927	0.0258212	0.188609	0.198721	0.20978	0.196394	0.117857	0.218978	0.0708483	0.21734	0.248043	0.128798	0.105889	0.213066	0.349974	0.269034	0.024779	0.155577	0.202836	0.0329788	0.16036	0.0971939	0.100107	0.111679	0.0319626	0.0682226	0.0776167	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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