TCONS_00012457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012457
Unique NameTCONS_00012457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012457 ID=TCONS_00012457|Name=TCONS_00012457|organism=Clytia hemisphaerica|type=transcript|length=250bp
GCTGATATGAAAATAGGTTTTAAATGAATGCAGGTTCCTTTCATGAATCT
AGGTTCCCTGGACAACAGCGATGgagttttttctctttcaaaGAGAGTTT
ATTTCAGGGGGtgaaacaaaatatttatcGCTAATGTTGTTTCTTCATTA
AAGTGTTCTGACTTATCTAATTATGTAAACACcattaaaaaggaatttta
ggaATCATACATAAGGTAAGTAATAACAATAGAACTAACAATGTTAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000144:5542..5791

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012457 ID=TCONS_00012457|Name=TCONS_00012457|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at sc0000144:5542..5791 (Clytia hemisphaerica)
CTTTTAACATTGTTAGTTCTATTGTTATTACTTACCTTATGTATGATtcc
taaaattcctttttaatgGTGTTTACATAATTAGATAAGTCAGAACACTT
TAATGAAGAAACAACATTAGCgataaatattttgtttcaCCCCCTGAAAT
AAACTCTCtttgaaagagaaaaaactcCATCGCTGTTGTCCAGGGAACCT
AGATTCATGAAAGGAACCTGCATTCATTTAAAACCTATTTTCATATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006996XLOC_006996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012457-exon-sc0000144-1491911889:5542..5791TCONS_00012457-exon-sc0000144-1491911889:5542..5791Clytia hemisphaericaexon
TCONS_00012457-exon-sc0000144-1510915933:5542..5791TCONS_00012457-exon-sc0000144-1510915933:5542..5791Clytia hemisphaericaexon
TCONS_00012457-exon-sc0000144-1575043694:5542..5791TCONS_00012457-exon-sc0000144-1575043694:5542..5791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:5542..5791 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.849203	0	0	0.985604	3.69084	1.29202	0	3.10673	1.02112	0	0.529486	1.30593	0	1.72648	0.589864	0	1.70553	1.48241	0	0	0.799125	1.64616	2.20374	0	0	0.850883	2.60074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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