TCONS_00012462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012462
Unique NameTCONS_00012462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012462 ID=TCONS_00012462|Name=TCONS_00012462|organism=Clytia hemisphaerica|type=transcript|length=692bp
GCGATTCGATGAAATTCTAGTTTAGGACTACGCACTACGTGATGCATGCa
acatttaaaacattttttaaagggAGATTGGAAATCAtttaaaacgtttt
aaaaataCACCTTTGTTCTTCATAATCACAATGAGCTACGTTACAGACTA
TCGAAAATACAGAGAGAGGTCTACTGAATAACCAACGGAACACTTAAAAT
GATTGATCACCTCCATTTGTAATTTCCTTATTGTCTTTTTTTACACTACG
CTATTACTTTGACCGAAGATCTCGGAAACATTTATCATATTTTAAGGCCA
ATTTGAGGctctgttgtttttttctttataatcaTTGAGATATTGATTTC
CGGAAaatcccccctggtgaattctcTCTGGACACCAAGAAATTAACCTG
TTAATCAGAAATGCAATTGGAAGTTGTGTATTACACACCTTTTTGTTATG
GACCTTCGCCCTCCCTTTTCAAGAATATGGAGGGCGTTCGGCTTTCTTTT
CATGATGTATTTTCTTGTGACTACAGTAAAATGtgtaaataaagtaaaac
attttaattgataatatgttctttcaattttttatttcgcATGGCTTGTG
ATTGCTATATTACCAATAGAACACATATTGTACATAAAGACAAGAATATC
AACTAACTATTCGCAAAaccaaaaacctttttttaactAAAT
Run BLAST on NCBI

transcript from alignment at sc0000144:86866..87557

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012462 ID=TCONS_00012462|Name=TCONS_00012462|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000144:86866..87557 (Clytia hemisphaerica)
ATTTagttaaaaaaaggtttttggtTTTGCGAATAGTTAGTTGATATTCT
TGTCTTTATGTACAATATGTGTTCTATTGGTAATATAGCAATCACAAGCC
ATgcgaaataaaaaattgaaagaacatattatcaattaaaatgttttact
ttatttacaCATTTTACTGTAGTCACAAGAAAATACATCATGAAAAGAAA
GCCGAACGCCCTCCATATTCTTGAAAAGGGAGGGCGAAGGTCCATAACAA
AAAGGTGTGTAATACACAACTTCCAATTGCATTTCTGATTAACAGGTTAA
TTTCTTGGTGTCCAGAgagaattcaccaggggggattTTCCGGAAATCAA
TATCTCAAtgattataaagaaaaaaacaacagagCCTCAAATTGGCCTTA
AAATATGATAAATGTTTCCGAGATCTTCGGTCAAAGTAATAGCGTAGTGT
AAAAAAAGACAATAAGGAAATTACAAATGGAGGTGATCAATCATTTTAAG
TGTTCCGTTGGTTATTCAGTAGACCTCTCTCTGTATTTTCGATAGTCTGT
AACGTAGCTCATTGTGATTATGAAGAACAAAGGTGtatttttaaaacgtt
ttaaaTGATTTCCAATCTccctttaaaaaatgttttaaatgttGCATGCA
TCACGTAGTGCGTAGTCCTAAACTAGAATTTCATCGAATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007001XLOC_007001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012462-exon-sc0000144-1491911889:86866..87557TCONS_00012462-exon-sc0000144-1491911889:86866..87557Clytia hemisphaericaexon
TCONS_00012462-exon-sc0000144-1510915933:86866..87557TCONS_00012462-exon-sc0000144-1510915933:86866..87557Clytia hemisphaericaexon
TCONS_00012462-exon-sc0000144-1575043694:86866..87557TCONS_00012462-exon-sc0000144-1575043694:86866..87557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:86866..87557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8259	10.5293	21.2908	26.5253	23.4761	14.7157	20.0203	26.6996	19.8071	16.4073	7.5906	10.7133	11.3335	7.45767	19.2695	8.81774	4.08042	3.10846	17.2561	47.9621	2.6987	1.9745	4.2952	5.74259	1.10408	2.81534	16.115	10.9639	14.9194	7.39261
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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