TCONS_00012469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012469
Unique NameTCONS_00012469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012469 ID=TCONS_00012469|Name=TCONS_00012469|organism=Clytia hemisphaerica|type=transcript|length=305bp
AAGAAAAACTAGACAtatttaacaaactttttacCGATTGTCTAGACCGA
CACGCACCCCTCATCAGGCAGAAATTAACGCGCCCATCAGCTCCGTGGTT
AAAAGATCTCAACATCAGCGAGAAGCAAAAGGAAAGAGACTATTTACGAA
CCAAATGTCATTCCCCGCAGTCCGAGCAAAAAGATTGGGATCTGTTTCGT
AAAATCCGAAACGAATTAAAAACTCTTATTCGAGTAACAAAATCCAGTTT
TTACCGACGCGCACTATCCTCCAAAAGACCGAAAGAAGTATGGTCAACCA
TCCAT
Run BLAST on NCBI

protein sequence of TCONS_00012469-protein

>TCONS_00012469-protein ID=TCONS_00012469-protein|Name=TCONS_00012469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EKLDIFNKLFTDCLDRHAPLIRQKLTRPSAPWLKDLNISEKQKERDYLRT
KCHSPQSEQKDWDLFRKIRNELKTLIRVTKSSFYRRALSSKRPKEVWSTI
H
Run BLAST on NCBI

transcript from alignment at sc0000144:309825..310129

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012469 ID=TCONS_00012469|Name=TCONS_00012469|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0000144:309825..310129 (Clytia hemisphaerica)
ATGGATGGTTGACCATACTTCTTTCGGTCTTTTGGAGGATAGTGCGCGTC
GGTAAAAACTGGATTTTGTTACTCGAATAAGAGTTTTTAATTCGTTTCGG
ATTTTACGAAACAGATCCCAATCTTTTTGCTCGGACTGCGGGGAATGACA
TTTGGTTCGTAAATAGTCTCTTTCCTTTTGCTTCTCGCTGATGTTGAGAT
CTTTTAACCACGGAGCTGATGGGCGCGTTAATTTCTGCCTGATGAGGGGT
GCGTGTCGGTCTAGACAATCGgtaaaaagtttgttaaataTGTCTAGTTT
TTCTT

Coding sequence (CDS) from alignment at sc0000144:309825..310129

>TCONS_00012469 ID=TCONS_00012469|Name=TCONS_00012469|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000144:309825..310129 (Clytia hemisphaerica)
ATGGATGGTTGACCATACTTCTTTCGGTCTTTTGGAGGATAGTGCGCGTC
GGTAAAAACTGGATTTTGTTACTCGAATAAGAGTTTTTAATTCGTTTCGG
ATTTTACGAAACAGATCCCAATCTTTTTGCTCGGACTGCGGGGAATGACA
TTTGGTTCGTAAATAGTCTCTTTCCTTTTGCTTCTCGCTGATGTTGAGAT
CTTTTAACCACGGAGCTGATGGGCGCGTTAATTTCTGCCTGATGAGGGGT
GCGTGTCGGTCTAGACAATCGgtaaaaagtttgttaaataTGTCTAGTTT
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007008XLOC_007008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012469-exon-sc0000144-1491911889:309825..310129TCONS_00012469-exon-sc0000144-1491911889:309825..310129Clytia hemisphaericaexon
TCONS_00012469-exon-sc0000144-1510915933:309825..310129TCONS_00012469-exon-sc0000144-1510915933:309825..310129Clytia hemisphaericaexon
TCONS_00012469-exon-sc0000144-1575043694:309825..310129TCONS_00012469-exon-sc0000144-1575043694:309825..310129Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012469-proteinTCONS_00012469-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:309825..310129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6573	2.69774	2.28641	2.06384	0.70062	0.577604	0	0	0	0.772312	1.61879	0.328843	2.15361	0.395185	0.581254	0.753423	1.43396	1.45975	2.00697	6.58793	1.9339	1.87525	0.58616	1.711	0.881504	0	1.81643	2.01933	2.83764	1.07765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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