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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012470 ID=TCONS_00012470|Name=TCONS_00012470|organism=Clytia hemisphaerica|type=transcript|length=884bp
TTTACCCCAAATTCGGACTGAGGTAGGACTTTCCTGGATGAAGCGACTTT
TAACTTTCTTCATCTTTTGTACAAGGacattttgaaataaagttTTGTGT
TTTGCATCGACTGTTGTTGTGTCCTTTTCATAAAACTGTTCCTTTTGAAC
GGGGATCAGTTCGATGCCAAATAATGCTTCATTACTGTCTTTTGTTGATG
TTCCCTCGACCGGCTGGACATGAATGTTCTTCGATGTGGACTGAACTTCA
TTTTCGTCTTGTAAAGATGCATTAATGTCAATTAAGTTTTCAACTTCGTT
GGTCTCACTGCTCTTTGCTGCAAAGTCAGATTCTTCTTCATCATCGTATG
TTGTGTCAAAGTTGGCCTCTTTTCTATCTTGATTGTCTTCAAATGATACT
TTGAGTCCGTCTGGTTCGGAGTTTCTGCTTTGAACATCATCTTCTTCATT
CTTTTTGTCTCCAGAGCGAAGGTAAGGGGTGTCGGAGTGGGAGGAATAAC
TGGGAGGGGGAGAGCGTGGAGTATATTCTATTTCAACATCAGAGTCGCCA
CTGTCACTACAAAGTTCAAGCTCTTCATATTTGACAGGCTCCTCAGGTTC
CATTTCATACCAAGGATATGGGGGATCTGGAAAGTTGGGTTGGGAATTAG
CATTTAAATCGCTTTCACTCGACGATCGATGGATCATACAGTTGAAAGTG
TTCCTTTTAGTCGTATATGCATTGTTGTTGCCATCTCTTTTCGTATATAG
TTGTCTAAAAAGTCGATAACACGATAATATCTGCAATTGATGTTATGGAA
GGTTCCAGATCTAAATCAGTAACAAGTCTCTTTACTAATAGTACGGTTCG
TAACTCTCTAGCTTTCCAGCATGTTTCGACTCTC Run BLAST on NCBI protein sequence of TCONS_00012470-protein >TCONS_00012470-protein ID=TCONS_00012470-protein|Name=TCONS_00012470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MIHRSSSESDLNANSQPNFPDPPYPWYEMEPEEPVKYEELELCSDSGDSD
VEIEYTPRSPPPSYSSHSDTPYLRSGDKKNEEDDVQSRNSEPDGLKVSFE
DNQDRKEANFDTTYDDEEESDFAAKSSETNEVENLIDINASLQDENEVQS
TSKNIHVQPVEGTSTKDSNEALFGIELIPVQKEQFYEKDTTTVDAKHKTL
FQNVLVQKMKKVKSRFIQESPTSVRIWGK Run BLAST on NCBI transcript from alignment at sc0000144:340640..341523 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012470 ID=TCONS_00012470|Name=TCONS_00012470|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at sc0000144:340640..341523 (Clytia hemisphaerica)
GAGAGTCGAAACATGCTGGAAAGCTAGAGAGTTACGAACCGTACTATTAG
TAAAGAGACTTGTTACTGATTTAGATCTGGAACCTTCCATAACATCAATT
GCAGATATTATCGTGTTATCGACTTTTTAGACAACTATATACGAAAAGAG
ATGGCAACAACAATGCATATACGACTAAAAGGAACACTTTCAACTGTATG
ATCCATCGATCGTCGAGTGAAAGCGATTTAAATGCTAATTCCCAACCCAA
CTTTCCAGATCCCCCATATCCTTGGTATGAAATGGAACCTGAGGAGCCTG
TCAAATATGAAGAGCTTGAACTTTGTAGTGACAGTGGCGACTCTGATGTT
GAAATAGAATATACTCCACGCTCTCCCCCTCCCAGTTATTCCTCCCACTC
CGACACCCCTTACCTTCGCTCTGGAGACAAAAAGAATGAAGAAGATGATG
TTCAAAGCAGAAACTCCGAACCAGACGGACTCAAAGTATCATTTGAAGAC
AATCAAGATAGAAAAGAGGCCAACTTTGACACAACATACGATGATGAAGA
AGAATCTGACTTTGCAGCAAAGAGCAGTGAGACCAACGAAGTTGAAAACT
TAATTGACATTAATGCATCTTTACAAGACGAAAATGAAGTTCAGTCCACA
TCGAAGAACATTCATGTCCAGCCGGTCGAGGGAACATCAACAAAAGACAG
TAATGAAGCATTATTTGGCATCGAACTGATCCCCGTTCAAAAGGAACAGT
TTTATGAAAAGGACACAACAACAGTCGATGCAAAACACAAaactttattt
caaaatgtCCTTGTACAAAAGATGAAGAAAGTTAAAAGTCGCTTCATCCA
GGAAAGTCCTACCTCAGTCCGAATTTGGGGTAAA Coding sequence (CDS) from alignment at sc0000144:340640..341523 >TCONS_00012470 ID=TCONS_00012470|Name=TCONS_00012470|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000144:340640..341523 (Clytia hemisphaerica)
ATGATCCATCGATCGTCGAGTGAAAGCGATTTAAATGCTAATTCCCAACC
CAACTTTCCAGATCCCCCATATCCTTGGTATGAAATGGAACCTGAGGAGC
CTGTCAAATATGAAGAGCTTGAACTTTGTAGTGACAGTGGCGACTCTGAT
GTTGAAATAGAATATACTCCACGCTCTCCCCCTCCCAGTTATTCCTCCCA
CTCCGACACCCCTTACCTTCGCTCTGGAGACAAAAAGAATGAAGAAGATG
ATGTTCAAAGCAGAAACTCCGAACCAGACGGACTCAAAGTATCATTTGAA
GACAATCAAGATAGAAAAGAGGCCAACTTTGACACAACATACGATGATGA
AGAAGAATCTGACTTTGCAGCAAAGAGCAGTGAGACCAACGAAGTTGAAA
ACTTAATTGACATTAATGCATCTTTACAAGACGAAAATGAAGTTCAGTCC
ACATCGAAGAACATTCATGTCCAGCCGGTCGAGGGAACATCAACAAAAGA
CAGTAATGAAGCATTATTTGGCATCGAACTGATCCCCGTTCAAAAGGAAC
AGTTTTATGAAAAGGACACAACAACAGTCGATGCAAAACACAAaacttta
tttcaaaatgtCCTTGTACAAAAGATGAAGAAAGTTAAAAGTCGCTTCAT
CCAGGAAAGTCCTACCTCAGTCCGAATTTGGGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012470-exon-sc0000144-1491911889:340640..341523 | TCONS_00012470-exon-sc0000144-1491911889:340640..341523 | Clytia hemisphaerica | exon |
| TCONS_00012470-exon-sc0000144-1510915933:340640..341523 | TCONS_00012470-exon-sc0000144-1510915933:340640..341523 | Clytia hemisphaerica | exon |
| TCONS_00012470-exon-sc0000144-1575043694:340640..341523 | TCONS_00012470-exon-sc0000144-1575043694:340640..341523 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:340640..341523 . |
Blast
The following BLAST results are available for this feature:
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