TCONS_00012474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012474
Unique NameTCONS_00012474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012474 ID=TCONS_00012474|Name=TCONS_00012474|organism=Clytia hemisphaerica|type=transcript|length=414bp
GATGTCTCAAGCTTCTCTGGATCGAACAAACCGCAATAACACGTTATATA
TGATCTTTTAgctcaaaaatatttagaatatAATATTAAACTGATGTAAC
TAAAGTGTCTTAAGGGTACACGATGGTCAATTGACTATCTGAACAAAATT
TGTTATAGATCATTATGCCTTACTTTTTGGTTAAAACGATTTGTATAGTT
CAAAAGGGCATAAAAATGGCTACTGAAtgttgtaaaaaaattttcaaaat
ggcagctTACTCAACGGCTATGacgtaattttcaaaaagtacaaTAAAAC
TTCAATGAGTTAACATGCCAAATTGAATAACTTTCACATAACAAAAAATA
GAGCTCCTTAAAGCCATCCCCCGTAGGTACAAAACCATGCTTCATTTTGT
TGATTTATCGTTTC
Run BLAST on NCBI

transcript from alignment at sc0000144:426128..426541

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012474 ID=TCONS_00012474|Name=TCONS_00012474|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000144:426128..426541 (Clytia hemisphaerica)
GAAACGATAAATCAACAAAATGAAGCATGGTTTTGTACCTACGGGGGATG
GCTTTAAGGAGCTCTATTTTTTGTTATGTGAAAGTTATTCAATTTGGCAT
GTTAACTCATTGAAGTTTTAttgtactttttgaaaattacgtCATAGCCG
TTGAGTAagctgccattttgaaaatttttttacaacaTTCAGTAGCCATT
TTTATGCCCTTTTGAACTATACAAATCGTTTTAACCAAAAAGTAAGGCAT
AATGATCTATAACAAATTTTGTTCAGATAGTCAATTGACCATCGTGTACC
CTTAAGACACTTTAGTTACATCAGTTTAATATTatattctaaatattttt
gagcTAAAAGATCATATATAACGTGTTATTGCGGTTTGTTCGATCCAGAG
AAGCTTGAGACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007013XLOC_007013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012474-exon-sc0000144-1491911889:426128..426541TCONS_00012474-exon-sc0000144-1491911889:426128..426541Clytia hemisphaericaexon
TCONS_00012474-exon-sc0000144-1510915933:426128..426541TCONS_00012474-exon-sc0000144-1510915933:426128..426541Clytia hemisphaericaexon
TCONS_00012474-exon-sc0000144-1575043694:426128..426541TCONS_00012474-exon-sc0000144-1575043694:426128..426541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:426128..426541 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.466935	0.233384	0	0.444997	1.1597	0.145836	0.228377	0	0.393553	0.805687	0.119531	0.252333	0.70844	0.519668	0.532643	0	0.218499	0.367135	0.342337	0	0	0	0.16583	0	0.253256	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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