|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012475 ID=TCONS_00012475|Name=TCONS_00012475|organism=Clytia hemisphaerica|type=transcript|length=1740bp
TCTCCATAAgactttttttgtgaaagtttggtCGCCCGATTCGGAATTAA
ATGTTCGGTGAATCGGGAAATTATTTCCCGCGtaaattcttgcataagcc
GTTTTATCTCTATTATATTACGCCACGCAAACTTATCGGACAGTATTTGC
GGTGTATAGATTCTAATTAACTCCGTAGTAGTTAGCGCACTTGTTTTATG
AAATCTAaataacggagataattaaAAGCCTCGTGAAAGTTTGTCAAAAG
TTTCTACTGCAAGTGCAAACAGCAGATAATTCTTGATGTAGATTTTAAAT
CTACAACTACAATAAGGattcttcaaaattgaaattgaaatttatggTTC
TTCATTGATATTATTCATTTCAAACTACCACACTCGTGATGTTGTTGAAA
ACAAACCTCCTTTCACTAGAATCACTTTTGAGATGTTTAAAACATTTGGT
TTTGGAAGATGGATGTGTTTGAGTTTGTGttgataagaaaaataagataG
ACTGATAACaagaagtttattattgtttcaattactCGAAATCTATGATA
ACAGTTGATAGCATGTCCCAACCAAGATCAATCACTGCATATATGGCAAC
CTAACCAATGTACCTTAGCTACAATTAGCAGATTTAAAGTGAAGCAAAAG
AACATTTATCACCTAAACGCTAAAGCAAGATTTGATTGACGATTCACCGT
TCCAAGACAAGTGTAACCATTGCAAGTATTGACTTAAAATTTCTTGAACA
AACATACACAACTGTCGGCTGTTTGGCAGCcagtttatttcttttatttc
ggGCACAATTTTTGGGCCATTTCAAGATATTGTCCAGTTGTCAACTGAAA
TTATTGGAGTCTATGCCCGGCTGAACAACAGTCTCTATGTAGGGGACTAC
TGGTATTTAGTCAAAAATGAGATTGACGTTACGTATCCTTTCTCTGGAAT
GGCCAGCTTTTGATTATTATTGCTGTTCCCCTTGCATTCCATTGAAACAT
GGAGTTATCAAGATATTTACTGCAGTTTTGATTACACAACGTGACATTGC
ACCTacattaaaagaagaaattttggcaggaatttaatttggaggATGGC
CGAAAaggttttttcagagggaatttaatttaagACCCTCCCGGCACTCC
AGAAACGTCCGGAGCAAAAAGTGTCGTTTTTCTCGTATTTCGGCAATTGA
TCTNgaagaaattttggcaggaatttaatttggcggatggccgaaaaagt
tttttcagagggaatttaatttaagACCCTCCCAGCACTCCAGAAACGTC
CTGAGCAAAAAGTGTAGTTTTTCTCGTATTTCGGCAATTGATCTACACTG
GAACTCTGGAGCTGTGTTAAGAGTAACTTTCCGGAGatgaaaatagtgtt
ttttttagCTGCTCTGGAAAACTCCGGAagtttccggagcgccgggaggg
tcctttTAATTTGGTGGTtaacttgaaaattaaatttagcgggaatttaa
tttggtggatttggcCAAAATCATCCACATGTAACTTTTACTGCCATCCG
CCGCCAAAGTTAGATTATTGTTTTCTCTCCCTCAAATGTTATCTATTTTA
AGGCAAATAACttcccgtcaaatttaatttttcaaagctCGCAGCCATAT
TAAATTCCCTCCAAAATCTTTACTTTTGTTAAGAATACTTTAACTTTATT
ATTAGATTTACTATAataatttattgaaactttctagcaa Run BLAST on NCBI transcript from alignment at sc0000144:439262..441001 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012475 ID=TCONS_00012475|Name=TCONS_00012475|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000144:439262..441001 (Clytia hemisphaerica)
ttgctagaaagtttcaataaattatTATAGTAAATCTAATAATAAAGTTA
AAGTATTCTTAACAAAAGTAAAGATTTTGGAGGGAATTTAATATGGCTGC
GagctttgaaaaattaaatttgacgggaaGTTATTTGCCTTAAAATAGAT
AACATTTGAGGGAGAGAAAACAATAATCTAACTTTGGCGGCGGATGGCAG
TAAAAGTTACATGTGGATGATTTTGgccaaatccaccaaattaaattccc
gctaaatttaattttcaagttaACCACCAAATTAaaaggaccctcccggc
gctccggaaactTCCGGAGTTTTCCAGAGCAGctaaaaaaaacactattt
tcatCTCCGGAAAGTTACTCTTAACACAGCTCCAGAGTTCCAGTGTAGAT
CAATTGCCGAAATACGAGAAAAACTACACTTTTTGCTCAGGACGTTTCTG
GAGTGCTGGGAGGGTcttaaattaaattccctctgaaaaaactttttcgg
ccatccgccaaattaaattcctgccaaaatttcttcNAGATCAATTGCCG
AAATACGAGAAAAACGACACTTTTTGCTCCGGACGTTTCTGGAGTGCCGG
GAGGGTcttaaattaaattccctctgaaaaaacctTTTCGGCCATcctcc
aaattaaattcctgccaaaatttcttcttttaatgtAGGTGCAATGTCAC
GTTGTGTAATCAAAACTGCAGTAAATATCTTGATAACTCCATGTTTCAAT
GGAATGCAAGGGGAACAGCAATAATAATCAAAAGCTGGCCATTCCAGAGA
AAGGATACGTAACGTCAATCTCATTTTTGACTAAATACCAGTAGTCCCCT
ACATAGAGACTGTTGTTCAGCCGGGCATAGACTCCAATAATTTCAGTTGA
CAACTGGACAATATCTTGAAATGGCCCAAAAATTGTGCccgaaataaaag
aaataaactgGCTGCCAAACAGCCGACAGTTGTGTATGTTTGTTCAAGAA
ATTTTAAGTCAATACTTGCAATGGTTACACTTGTCTTGGAACGGTGAATC
GTCAATCAAATCTTGCTTTAGCGTTTAGGTGATAAATGTTCTTTTGCTTC
ACTTTAAATCTGCTAATTGTAGCTAAGGTACATTGGTTAGGTTGCCATAT
ATGCAGTGATTGATCTTGGTTGGGACATGCTATCAACTGTTATCATAGAT
TTCGagtaattgaaacaataataaacttcttGTTATCAGTCtatcttatt
tttcttatcaaCACAAACTCAAACACATCCATCTTCCAAAACCAAATGTT
TTAAACATCTCAAAAGTGATTCTAGTGAAAGGAGGTTTGTTTTCAACAAC
ATCACGAGTGTGGTAGTTTGAAATGAATAATATCAATGAAGAAccataaa
tttcaatttcaattttgaagaatCCTTATTGTAGTTGTAGATTTAAAATC
TACATCAAGAATTATCTGCTGTTTGCACTTGCAGTAGAAACTTTTGACAA
ACTTTCACGAGGCTTttaattatctccgttattTAGATTTCATAAAACAA
GTGCGCTAACTACTACGGAGTTAATTAGAATCTATACACCGCAAATACTG
TCCGATAAGTTTGCGTGGCGTAATATAATAGAGATAAAACggcttatgca
agaatttaCGCGGGAAATAATTTCCCGATTCACCGAACATTTAATTCCGA
ATCGGGCGaccaaactttcacaaaaaaagtcTTATGGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012475-exon-sc0000144-1491911889:439262..441001 | TCONS_00012475-exon-sc0000144-1491911889:439262..441001 | Clytia hemisphaerica | exon |
| TCONS_00012475-exon-sc0000144-1510915933:439262..441001 | TCONS_00012475-exon-sc0000144-1510915933:439262..441001 | Clytia hemisphaerica | exon |
| TCONS_00012475-exon-sc0000144-1575043694:439262..441001 | TCONS_00012475-exon-sc0000144-1575043694:439262..441001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:439262..441001 . |
Blast
The following BLAST results are available for this feature:
|
