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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012500 ID=TCONS_00012500|Name=TCONS_00012500|organism=Clytia hemisphaerica|type=transcript|length=1415bp
TAATTTTCTAAATATTGCAATCAACCtattaaagatgaaaaaaaagattt
tagcgCGGTGGATCAACTTGTAAGAGTAAATTATAATAtgtaaaatttcg
cgaaaactATTAACTTCAAGAGGACATTTTGAAACAATTGAATTACCAAA
CGAAAATAAGACATTTTTATGCAaattccagtcaaaatttgttATTTAGA
AGCATATTCAGCAGTTTCTACACGCTTTATCGTTATTGACGTCATCAATA
GGCGAAAACTCAGAATTGGAAAGCGGCGGCATGAAAGGGTTGATAAAGTC
TATGAAAAAGTGTCAggtcaagtcaaaaaaattgttatgcaaaataaatt
aaaaatactaaaaaagtttataaaattaaaaaaaagaaaacgctaTAGCC
CGATTACATTAAAAAAGCCTAGCATAAAAATTTCATTCACTTACAGTAGT
CATATTGTTTAGTTTCTTGGAATGTCTTTGTTGAGTCACTGAATATACTG
CATTAAATGTAAAAAAAGATACCGTGTAATCTCGTCCAAAATTTGTACAC
ATCCTCACCAAGAATCTCGTCCAAAATTCAGATTTAACACCAGCTCCTTC
AAAAACACTCAAAGTTTTCGGCAAAGAGTAAGTCCATCAGCGATGTTTAA
GAAAGACAATTGAAAACGTTTatctaatttcaatttctgatttAGCTTGT
GAATATATTCAGCTCTATGGCGTCGCTCAGGCGTCATTTCTTGTGTCAAA
TCGGCCACTCGACCCGCTTGCAACATATTATCAAAAGCTAAAATGCCACC
GCATCTAAGCAATAGCATAGCACGATCTAGATACTTTTCATAAGAGGTTT
TGTCAGCATCCACATAAATGAAATCGAAGGTCTCCGTTTCTCCCTTAGAG
ATCAACTCATCCAAAGATTCCACAGCCGGCCCAATCTTGACCACAATTTT
ATCTTTGACGCCAGCTTTCTCGAAAAAGGGATACCCTTCCTTAACATAAT
CCTCGTTAATATCCAGGGCGTAAATAACGCCATCACTTGGAATGGTAAGG
GCGGTGCTCAAGACATTATACCCAGTATAGGTACCAACTTCAATGCATTT
CTTCGCATCTAACATATTCAACAAAAGtcggaaaaattgaatttggcaTG
GATCAGATACCATATCATAATCTTCAACGTTTTTTATAGTATGCTCACGC
AATTCTTTCAAAACAGCAGGCTCTCTCAACGAATTTTCTTTTACGTATTT
GTCCGCTACCCtcgaatttttcaaatcaattcccTGATTTACAGGTTCCT
TTGGAGGGGTCGGAGTTGCGGACATATACCGGACAGCCAAATTACCGGca
acaaatgacgtcacagCAATGCCAGCGacattttttgtttttatgtttgt
gtTTTTGTCTCTAAA Run BLAST on NCBI transcript from alignment at sc0000145:200780..202225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012500 ID=TCONS_00012500|Name=TCONS_00012500|organism=Clytia hemisphaerica|type=transcript|length=1446bp|location=Sequence derived from alignment at sc0000145:200780..202225+ (Clytia hemisphaerica)
TAATTTTCTAAATATTGCAATCAACCtattaaagatgaaaaaaaagattt
tagcgCGGTGGATCAACTTGTAAGAGTAAATTATAATAtgtaaaatttcg
cgaaaactATTAACTTCAAGAGGACATTTTGAAACAATTGAATTACCAAA
CGAAAATAAGACATTTTTATGCAaattccagtcaaaatttgttATTTAGA
AGCATATTCAGCAGTTTCTACACGCTTTATCGTTATTGACGTCATCAATA
GGCGAAAACTCAGAATTGGAAAGCGGCGGCATGAAAGGGTTGATAAAGTC
TATGAAAAAGTGTCAggtcaagtcaaaaaaattgttatgcaaaataaatt
aaaaatactaaaaaagtttataaaattaaaaaaaagaaaacgctaTAGCC
CGATTACATTAAAAAAGCCTAGCATAAAAATTTCATTCACTTACAGTAGT
CATATTGTTTAGTTTCTTGGAATGTCTTTGTTGAGTCACTGAATATACTG
CATTAAATGTAAAAAAAGATACCGTGTAATCTCGTCCAAAATTTGTACAC
ATCCTCACCAAGAATCTCGTCCAAAATTCAGATTTAACACCAGCTCCTTC
AAAAACACTCAAAGTTTTCGGCAAAGAGTAAGTCCATCAGCGATGTTTAA
GAAAGACAATTGAAAACGTTTatctaatttcaatttctgatttAGCTTGT
GAATATATTCAGCTCTATGGCGTCGCTCAGGCGTCATTTCTTGTGTCAAA
TCGGCCACTCGACCCGCTTGCAACATATTATCAAAAGCTAAAATGCCACC
GCATCTAAGCAATAGCATAGCACGATCTAGATACTTTTCATAAGAGGTTT
TGTCAGCATCCACATAAATGAAATCGAAGGTCTCCGTTTCTCCCTTAGAG
ATCAACTCATCCAAAGATTCCACAGCCGGCCCAATCTTGACCACAATTTT
ATCTTTGACGCCAGCTTTCTCGAAAAAGGGATACCCTTCCTTAACATAAT
CCTCGTTAATATCCAGGGCGTAAATAACGCCATCACTTGGAATGGTAAGG
GCGGTGCTCAAGACATTATACCCAGTATAGGTACCAACTTCAATGCATTT
CTTCGCATCTAACATATTCAACAAAAGtcggaaaaattgaatttggcaTG
GATCAGATACCATATCATAATCTTCAACGTTTTTTATAGTATGCTCACGC
AATTCTTTCAAAACAGCAGGCTCTCTCAACGAATTTTCTTTTACGTATTT
GTCCGCTACCCtcgaatttttcaaatcaattcccTGATTTACAGGTTCCT
TTGGAGGGGTCGGAGTTGCGGACATATACCGGACAGCCAAATTACCGGca
acaaatgacgtcacagCAATGCCAGCGGCGATACCAAGCTCTTTGTTGAG
TAaagaagacattttttgtttttatgtttgtgtTTTTGTCTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012500-exon-sc0000145-1491911889:200780..202156 | TCONS_00012500-exon-sc0000145-1491911889:200780..202156 | Clytia hemisphaerica | exon |
| TCONS_00012500-exon-sc0000145-1510915933:200780..202156 | TCONS_00012500-exon-sc0000145-1510915933:200780..202156 | Clytia hemisphaerica | exon |
| TCONS_00012500-exon-sc0000145-1575043694:200780..202156 | TCONS_00012500-exon-sc0000145-1575043694:200780..202156 | Clytia hemisphaerica | exon |
| TCONS_00012500-exon-sc0000145-1491911889:202188..202225 | TCONS_00012500-exon-sc0000145-1491911889:202188..202225 | Clytia hemisphaerica | exon |
| TCONS_00012500-exon-sc0000145-1510915933:202188..202225 | TCONS_00012500-exon-sc0000145-1510915933:202188..202225 | Clytia hemisphaerica | exon |
| TCONS_00012500-exon-sc0000145-1575043694:202188..202225 | TCONS_00012500-exon-sc0000145-1575043694:202188..202225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:200780..202225 + |
Blast
BLAST of TCONS_00012500 vs. Swiss-Prot (Human)
Match: CMTD1 (Catechol O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 5.621e-34 Identity = 77/214 (35.98%), Postives = 125/214 (58.41%), Query Frame = -1
Query: 612 KYVKENSLREPAVLKELREHTIKNVEDYDMVSDPC-QIQFFRLLLNMLDAKKCIEVGTYTGYNVLSTALTIPSDGVIYALDINEDYVKEGYPFFEKAGVKDKIVVKIGPAVESLDELISKGETETFDFIYVDADKTSYEKYLDRAMLLLRCGGILAFDNMLQAGRVADLTQEMTPERRHRAEYIHKLNQKLKLDKRFQLSFLNIADGLTLCRKL 1250
+Y+ S+RE L+ LR T++ + M++ C Q Q L ++ AKK +++GT+TGY+ L+ AL +P+DG + +++ + G P + +A + KI +++ PA+E+LDEL++ GE TFD VDADK + Y +R + LLR GGILA +L G+V P+ AE + LN++++ D R +S L + DGLTL K+
Sbjct: 56 QYLLSRSMREHPALRSLRLLTLEQPQGDSMMT--CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-----PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
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