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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012516 ID=TCONS_00012516|Name=TCONS_00012516|organism=Clytia hemisphaerica|type=transcript|length=2430bp
tacagggtaaaatagaaaaataaataaacaaacaaataaagaaTGCTACC
TTGGATCCAGCCTTTTTTAAAGCGACCACAGTCAATCATGAATATGTGCA
GAGCTTGTTATTCATCAACAAACTTTCCAACAACATGCCCTGGTGCAAAT
TATTTCAAAGAAGGCGAAGAAACCCAGTTAAAACCCGATTCGGAATACCC
GGATTGGTTGTGGACCCTGGGTGGCCCTAAACGTGAATTCAAAGACATGT
CACCCGAGGTTGATGGGAAAGCATTTTTCAAAAGAgaacgaaaaatgaaa
attcgagagcAGAATATGATTcTTAAATAAAAATGGAAGTCAAGATTGAA
GATGAGATACAGAATGACCCATCACGTTTCAAAAAAGTCACAACCAAAAG
GCTGGTCTTCATCGAATACCCTGGGTTCATAAAGAATGTAGACAAAATGC
TGGCAACCCTGGGTggtgaagaaaaaatttctgaaacttATCGGAGCGGT
AAACAACGTCTTCAAATGACGTATCGACCTGAAGATTTAAATGCTCATAA
CGCATGCGCCGATTTGCTACCATTTACTGGTTTATTGTTAAAAGTACGGC
GCCGAAGAAAGAAAGGAACTGATGAATTCGAATACGAACAAGACATTGTA
GGTGTATCACGTGATCGGTATCGGTTCCAGACTCTCATGGATTATCAATA
TTTGACACCTGAACCGCTTTGGAATTATTTTAAATCAATTCATACTAGTG
AGCTAGGGAACACTGACTTTCCACCTTATTTTGCACCGCCTGTCTTCGCG
AGACTCGATTCTGCTGGAGTTTACCAATACAAACCGGATCTAGTTACCGG
GATTAAAACAGTTGCTAAAGCGCCGGAAATCGGTATTGATTCTATACGGA
AGCGTCGTCATACAGAGTCTATGGCTGCCCTTTATTCAAGTGCAGATGTG
CCAAGTAAACCTACAGAAAAAGCTTGTACcattattgaaaatttgaataa
aggtCCAGATGCGGATGCAATAAAACAACTCGAACTTATGTTTAACGAGA
GACCGTTATGGTCCAAGCTTGCAATATCATGTTTGGTGGATGTCACTCCT
GAGCGATTGAAGAAAGTCTTACAGTATTTTGCTTATTACTGGTTAAGTGG
ACCTTGGAGGACCCTTTGGTGTCGCATGGGCTACGACCCGAGAAAAGATC
CGAAAGCTAAACGTTATCAAATGGTTGAGTTTCGTTTGAGACGATCAAAA
GAGAACAAGAAATGCTATAAAATGATGGTACCCGCTCGAAGATCCAATAA
AGATTACTTAcctcgtaatttgagaaatatcGTGTCCAGGGCACCGGCCT
CAAAGTCAGTCCTCGCCGCCTGTAATGAGCCAGAGAACAAAGAAGAAGGT
GATAAAGAGCCGTATATTTTTCATCCAAATAAAATGATTCATTCGCGGAG
TATGATGTTACAATTGTGTGATATTCACGACCCAGCTGTTCAGAAAATCA
TCGTTGAGAATGACGGTATGGAAACCAGGTGCGATGAGAGAGAGGGATGG
TTTCCACAAGGTACAATGGGCCGGATCCGTAATGAGATGACTAAAACGGT
TGACGCCTATTTTGAGAGGCAATACGAgaaacaaaaatctgaaaatctta
GCAGTGATAAAACTGGTGGCGGTGAAGCAGGCGTTCATTCTGATGTGCAG
GGTGAAGGAGGCGTTGTCAAAGAGGAAGAGAGGTTCCGTGAAGGAGCGCT
TTACGACGAAGACATGTACGAACGAGACACGGAACCGCCCTCCTCCACAC
AGATGTTAAGTTACACACAAATGTTACAAGGTGATGATGATTATAGTATG
GATACTGGCCAATTCTACGATGAAGAAGAATTTAATGTTTATGCTTGAGA
ATTGAAAATCATAAATTCTCTTCGGATTTGATCACACCTTTTTTACGCTA
GCTAAGGGCCCTAAGGTTTGTTAAGAGGATTAAGAGAATTTGGTTCAAgt
ttacagtggagtctccataactcgaacacgcatgggaaacacaaatttgt
tcgagctaaggatattttaaattatggagtaagatttataagcattgtta
actgaagggacaacaaaattgttcgagttaaagaggctGCACTGTATATA
ACAGTTCTATCTATCATCTTTTCAACGCAATGACTTCAGACATACGATGC
TTTGTCTCTTGTAAAGTCGAACCCAAACTGTATGTAGCTAGCATGTGACC
ATGAAATGTGACGCCCTCGGCAATCTTGTATTTTCATTAACTTGTAAGTC
ACTTTTATTGCTAGGATATGAGCCTAATTGTACACATATAAAAAATACTC
TATTGTACACGGTTTAATGGTAGTCGGTAGTCTGTTCCTTTCTTATCCTA
TTTTACAGTCTGTTCCTGTAAAGAATCCTG Run BLAST on NCBI protein sequence of TCONS_00012516-protein >TCONS_00012516-protein ID=TCONS_00012516-protein|Name=TCONS_00012516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MEVKIEDEIQNDPSRFKKVTTKRLVFIEYPGFIKNVDKMLATLGGEEKIS
ETYRSGKQRLQMTYRPEDLNAHNACADLLPFTGLLLKVRRRRKKGTDEFE
YEQDIVGVSRDRYRFQTLMDYQYLTPEPLWNYFKSIHTSELGNTDFPPYF
APPVFARLDSAGVYQYKPDLVTGIKTVAKAPEIGIDSIRKRRHTESMAAL
YSSADVPSKPTEKACTIIENLNKGPDADAIKQLELMFNERPLWSKLAISC
LVDVTPERLKKVLQYFAYYWLSGPWRTLWCRMGYDPRKDPKAKRYQMVEF
RLRRSKENKKCYKMMVPARRSNKDYLPRNLRNIVSRAPASKSVLAACNEP
ENKEEGDKEPYIFHPNKMIHSRSMMLQLCDIHDPAVQKIIVENDGMETRC
DEREGWFPQGTMGRIRNEMTKTVDAYFERQYEKQKSENLSSDKTGGGEAG
VHSDVQGEGGVVKEEERFREGALYDEDMYERDTEPPSSTQMLSYTQMLQG
DDDYSMDTGQFYDEEEFNVYA Run BLAST on NCBI transcript from alignment at sc0000145:335819..338612+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012516 ID=TCONS_00012516|Name=TCONS_00012516|organism=Clytia hemisphaerica|type=transcript|length=2794bp|location=Sequence derived from alignment at sc0000145:335819..338612+ (Clytia hemisphaerica)
tacagggtaaaatagaaaaataaataaacaaacaaataaagaaTGCTACC
TTGGATCCAGCCTTTTTTAAAGCGACCACAGTCAATCATGAATATGTGCA
GAGCTTGTTATTCATCAACAAACTTTCCAACAACATGCCCTGGTGCAAAT
TATTTCAAAGAAGGCGAAGAAACCCAGTTAAAACCCGATTCGGAATACCC
GGATTGGTTGTGGACCCTGGGTGGCCCTAAACGTGAATTCAAAGACATGT
CACCCGAGGTTGATGGGAAAGCATTTTTCAAAAGAgaacgaaaaatgaaa
attcgagagcAGAATATGATTcgtaaacaaagaagattttaatgtgtttg
aaaattctttttttgtggatgttgtatatttttcatattttttagatctt
ttttttataatttccatGTAACTACAAGAGCTATTACATTAAGTTTTGCC
TCAAAGATTGCTTGCATTTTGACGGTTACTGTAGCATAAGTGTCttcgaa
ttttgaaaaagtctCCTTTGGATAATTTTTTCATCGCTTATGAAATGTGG
TTTAAATTGTCGAAATTCTATGGCTCTTATATAGTGGTTCAACTCTCTGC
ACTCTGTAAGGAAACTCaacatcattttttttcacCAATTACTGATCATA
AATTCAAACCTTTTTTATTTGGTTATTTATTTTCAGTTAAATAAAAATGG
AAGTCAAGATTGAAGATGAGATACAGAATGACCCATCACGTTTCAAAAAA
GTCACAACCAAAAGGCTGGTCTTCATCGAATACCCTGGGTTCATAAAGAA
TGTAGACAAAATGCTGGCAACCCTGGGTggtgaagaaaaaatttctgaaa
cttATCGGAGCGGTAAACAACGTCTTCAAATGACGTATCGACCTGAAGAT
TTAAATGCTCATAACGCATGCGCCGATTTGCTACCATTTACTGGTTTATT
GTTAAAAGTACGGCGCCGAAGAAAGAAAGGAACTGATGAATTCGAATACG
AACAAGACATTGTAGGTGTATCACGTGATCGGTATCGGTTCCAGACTCTC
ATGGATTATCAATATTTGACACCTGAACCGCTTTGGAATTATTTTAAATC
AATTCATACTAGTGAGCTAGGGAACACTGACTTTCCACCTTATTTTGCAC
CGCCTGTCTTCGCGAGACTCGATTCTGCTGGAGTTTACCAATACAAACCG
GATCTAGTTACCGGGATTAAAACAGTTGCTAAAGCGCCGGAAATCGGTAT
TGATTCTATACGGAAGCGTCGTCATACAGAGTCTATGGCTGCCCTTTATT
CAAGTGCAGATGTGCCAAGTAAACCTACAGAAAAAGCTTGTACcattatt
gaaaatttgaataaaggtCCAGATGCGGATGCAATAAAACAACTCGAACT
TATGTTTAACGAGAGACCGTTATGGTCCAAGCTTGCAATATCATGTTTGG
TGGATGTCACTCCTGAGCGATTGAAGAAAGTCTTACAGTATTTTGCTTAT
TACTGGTTAAGTGGACCTTGGAGGACCCTTTGGTGTCGCATGGGCTACGA
CCCGAGAAAAGATCCGAAAGCTAAACGTTATCAAATGGTTGAGTTTCGTT
TGAGACGATCAAAAGAGAACAAGAAATGCTATAAAATGATGGTACCCGCT
CGAAGATCCAATAAAGATTACTTAcctcgtaatttgagaaatatcGTGTC
CAGGGCACCGGCCTCAAAGTCAGTCCTCGCCGCCTGTAATGAGCCAGAGA
ACAAAGAAGAAGGTGATAAAGAGCCGTATATTTTTCATCCAAATAAAATG
ATTCATTCGCGGAGTATGATGTTACAATTGTGTGATATTCACGACCCAGC
TGTTCAGAAAATCATCGTTGAGAATGACGGTATGGAAACCAGGTGCGATG
AGAGAGAGGGATGGTTTCCACAAGGTACAATGGGCCGGATCCGTAATGAG
ATGACTAAAACGGTTGACGCCTATTTTGAGAGGCAATACGAgaaacaaaa
atctgaaaatcttaGCAGTGATAAAACTGGTGGCGGTGAAGCAGGCGTTC
ATTCTGATGTGCAGGGTGAAGGAGGCGTTGTCAAAGAGGAAGAGAGGTTC
CGTGAAGGAGCGCTTTACGACGAAGACATGTACGAACGAGACACGGAACC
GCCCTCCTCCACACAGATGTTAAGTTACACACAAATGTTACAAGGTGATG
ATGATTATAGTATGGATACTGGCCAATTCTACGATGAAGAAGAATTTAAT
GTTTATGCTTGAGAATTGAAAATCATAAATTCTCTTCGGATTTGATCACA
CCTTTTTTACGCTAGCTAAGGGCCCTAAGGTTTGTTAAGAGGATTAAGAG
AATTTGGTTCAAgtttacagtggagtctccataactcgaacacgcatggg
aaacacaaatttgttcgagctaaggatattttaaattatggagtaagatt
tataagcattgttaactgaagggacaacaaaattgttcgagttaaagagg
ctGCACTGTATATAACAGTTCTATCTATCATCTTTTCAACGCAATGACTT
CAGACATACGATGCTTTGTCTCTTGTAAAGTCGAACCCAAACTGTATGTA
GCTAGCATGTGACCATGAAATGTGACGCCCTCGGCAATCTTGTATTTTCA
TTAACTTGTAAGTCACTTTTATTGCTAGGATATGAGCCTAATTGTACACA
TATAAAAAATACTCTATTGTACACGGTTTAATGGTAGTCGGTAGTCTGTT
CCTTTCTTATCCTATTTTACAGTCTGTTCCTGTAAAGAATCCTG Coding sequence (CDS) from alignment at sc0000145:335819..338612+ >TCONS_00012516 ID=TCONS_00012516|Name=TCONS_00012516|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000145:335819..338612+ (Clytia hemisphaerica)
ATGGAAGTCAAGATTGAAGATGAGATACAGAATGACCCATCACGTTTCAA
AAAAGTCACAACCAAAAGGCTGGTCTTCATCGAATACCCTGGGTTCATAA
AGAATGTAGACAAAATGCTGGCAACCCTGGGTggtgaagaaaaaatttct
gaaacttATCGGAGCGGTAAACAACGTCTTCAAATGACGTATCGACCTGA
AGATTTAAATGCTCATAACGCATGCGCCGATTTGCTACCATTTACTGGTT
TATTGTTAAAAGTACGGCGCCGAAGAAAGAAAGGAACTGATGAATTCGAA
TACGAACAAGACATTGTAGGTGTATCACGTGATCGGTATCGGTTCCAGAC
TCTCATGGATTATCAATATTTGACACCTGAACCGCTTTGGAATTATTTTA
AATCAATTCATACTAGTGAGCTAGGGAACACTGACTTTCCACCTTATTTT
GCACCGCCTGTCTTCGCGAGACTCGATTCTGCTGGAGTTTACCAATACAA
ACCGGATCTAGTTACCGGGATTAAAACAGTTGCTAAAGCGCCGGAAATCG
GTATTGATTCTATACGGAAGCGTCGTCATACAGAGTCTATGGCTGCCCTT
TATTCAAGTGCAGATGTGCCAAGTAAACCTACAGAAAAAGCTTGTACcat
tattgaaaatttgaataaaggtCCAGATGCGGATGCAATAAAACAACTCG
AACTTATGTTTAACGAGAGACCGTTATGGTCCAAGCTTGCAATATCATGT
TTGGTGGATGTCACTCCTGAGCGATTGAAGAAAGTCTTACAGTATTTTGC
TTATTACTGGTTAAGTGGACCTTGGAGGACCCTTTGGTGTCGCATGGGCT
ACGACCCGAGAAAAGATCCGAAAGCTAAACGTTATCAAATGGTTGAGTTT
CGTTTGAGACGATCAAAAGAGAACAAGAAATGCTATAAAATGATGGTACC
CGCTCGAAGATCCAATAAAGATTACTTAcctcgtaatttgagaaatatcG
TGTCCAGGGCACCGGCCTCAAAGTCAGTCCTCGCCGCCTGTAATGAGCCA
GAGAACAAAGAAGAAGGTGATAAAGAGCCGTATATTTTTCATCCAAATAA
AATGATTCATTCGCGGAGTATGATGTTACAATTGTGTGATATTCACGACC
CAGCTGTTCAGAAAATCATCGTTGAGAATGACGGTATGGAAACCAGGTGC
GATGAGAGAGAGGGATGGTTTCCACAAGGTACAATGGGCCGGATCCGTAA
TGAGATGACTAAAACGGTTGACGCCTATTTTGAGAGGCAATACGAgaaac
aaaaatctgaaaatcttaGCAGTGATAAAACTGGTGGCGGTGAAGCAGGC
GTTCATTCTGATGTGCAGGGTGAAGGAGGCGTTGTCAAAGAGGAAGAGAG
GTTCCGTGAAGGAGCGCTTTACGACGAAGACATGTACGAACGAGACACGG
AACCGCCCTCCTCCACACAGATGTTAAGTTACACACAAATGTTACAAGGT
GATGATGATTATAGTATGGATACTGGCCAATTCTACGATGAAGAAGAATT
TAATGTTTATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012516-exon-sc0000145-1491911889:335819..336140 | TCONS_00012516-exon-sc0000145-1491911889:335819..336140 | Clytia hemisphaerica | exon |
| TCONS_00012516-exon-sc0000145-1510915933:335819..336140 | TCONS_00012516-exon-sc0000145-1510915933:335819..336140 | Clytia hemisphaerica | exon |
| TCONS_00012516-exon-sc0000145-1575043694:335819..336140 | TCONS_00012516-exon-sc0000145-1575043694:335819..336140 | Clytia hemisphaerica | exon |
| TCONS_00012516-exon-sc0000145-1491911889:336505..338612 | TCONS_00012516-exon-sc0000145-1491911889:336505..338612 | Clytia hemisphaerica | exon |
| TCONS_00012516-exon-sc0000145-1510915933:336505..338612 | TCONS_00012516-exon-sc0000145-1510915933:336505..338612 | Clytia hemisphaerica | exon |
| TCONS_00012516-exon-sc0000145-1575043694:336505..338612 | TCONS_00012516-exon-sc0000145-1575043694:336505..338612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000145 | supercontig | sc0000145:335819..338612 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR019136 | TF_IIIC_su-5 |
Blast
BLAST of TCONS_00012516 vs. Swiss-Prot (Human)
Match: TF3C5 (General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2) HSP 1 Score: 216.083 bits (549), Expect = 8.852e-61 Identity = 150/466 (32.19%), Postives = 230/466 (49.36%), Query Frame = 3
Query: 396 KRLVFIEYPGFIKNVDKMLATLGGEEKISETYRSGKQRLQMTYRPEDLNAHNACADLLPFTGX-----XXXXXXXXXXGTD---EFEYEQDIVGVSRDRYRFQTLMDYQYLTPEPLWNYFKSIHTS-------------ELGNTDFPPYFAPPVFARLDSAGVYQYKPDLV--TGIKTVAKAPEIGIDSIRKRRHTESMAALYSSADVPSKPTEKACTIIENLNKGP-DADAIKQLELMFNERPLWSKLAISCLVDVTPERLKKVLQYFAYYWLSGPWRTLWCRMGYDPRKDPKAKRYQMVEFRLRRS-KENKKCYKMMVPARRSNKDY-LPRNLRNIVSR-----------APASKSVLAACNEPENKEEGDKEPYIFHPNKMIHSRSMMLQLCDIHDPAVQKIIVENDGMETRCDEREGWFPQGTMGRIRNEMTKTVDAYFERQYEKQKSENL--SSDKTGGGE 1676
+R+V +EYPG +++V KML TLGGEE +S Y +RL++ +RP+D H CA+ + L R++ GT+ E ++ +I+G+ Y+FQ + D+QYL + HTS + + P Y PP+F+RLD+ Y Y+P+ G + E I R RR ++ + +VP +P E A + P D ++L +F+ RP+WS+ A+ + V P++LK +L + AYY ++GPWR+LW R GYDPRK+P AK YQ+++FR+R K + V A+RS +Y LP ++ S+ P+ S A +K + YIF + R M QLCD++ +QKII NDG E C ER+GW T +R+ M+ + RQ + K L SS K GG+
Sbjct: 22 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLA---VHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTS--GARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMI-----RQTIRSKRPALFSSSAKADGGK 477
The following BLAST results are available for this feature:
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