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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012532 ID=TCONS_00012532|Name=TCONS_00012532|organism=Clytia hemisphaerica|type=transcript|length=3230bpRun BLAST on NCBI protein sequence of TCONS_00012532-protein >TCONS_00012532-protein ID=TCONS_00012532-protein|Name=TCONS_00012532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp MCGVTISFWISSPESEDNDRPKPKPRPRPRPNPDLPGQKAGKGQQKAKPGRun BLAST on NCBI transcript from alignment at sc0000145:415754..428091+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012532 ID=TCONS_00012532|Name=TCONS_00012532|organism=Clytia hemisphaerica|type=transcript|length=12338bp|location=Sequence derived from alignment at sc0000145:415754..428091+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:415754..428091+ >TCONS_00012532 ID=TCONS_00012532|Name=TCONS_00012532|organism=Clytia hemisphaerica|type=CDS|length=24618bp|location=Sequence derived from alignment at sc0000145:415754..428091+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012532 vs. Swiss-Prot (Human)
Match: PAR12 (Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN=PARP12 PE=1 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 8.624e-54 Identity = 144/438 (32.88%), Postives = 228/438 (52.05%), Query Frame = 2
Query: 1064 KKLSTSNIAMATSAKIKTEYICGFYLKNRCTNGESCSAIHPPYMLSYCWYYRIQGESEVSVCPKGITKA-----VEKQYRDVNSTDFSQDPYCINFEIASYSKYKGLNTDFKRVSTPSTVSCKASGEPLATGWKWYWFDD-SSWVEYNLEYNFP--GQVSSEIIETEYEKF---QQKNDLKPMKFYTKEFHYTLDFKTMLQKNLHTDKQRHVRRRPAPFPEKRERSLA------PPTDNFPSHWTSA--PVIGYSAIPVKN--DVLSKIERDFAQTMGGRMNYRIISVGEICNKQLYRQYTIKKKNMEESNSGQ-VKEMQLWHGTDNDIVEKICQQNFDWRMVKTH--AYGKGSYFARDASYSNSFTNGATSNICSMFYADVLVGQYCRGLSDYNRPP--ERTKNVLYDSCVDNVSNPSIYVIFERDQFYPRYLIKYT 2299
+K S+ +++ T ++ + + IC ++++ C+ + C +H + L Y W + +G+ E + I +A +E+ +++ F +C+NF +Y T +R+ST S+V+ K L T W WYW D+ SW EY + VSS +E Y + +KF + +Y LDFK +QKNL + V RRP + ++ P + P +W S+ P G+ I + + + K+ F +T+ Y + + + N L+ Y +K M++ N G+ V E QL+HGT V+ ICQQNFDWR+ H +YGKGSYFARDA+YS+ ++ T +MF A VLVG++ RG + + RPP E N YDSCV++VS+PSI+VIFE+ Q YP Y+I+YT
Sbjct: 255 RKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVH--FHLPYRWQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHS--HCLNFNAMTYGA-----TQARRLSTASSVT-KPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLP---FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTH-TMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYT 678 The following BLAST results are available for this feature:
BLAST of TCONS_00012532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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