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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012546 ID=TCONS_00012546|Name=TCONS_00012546|organism=Clytia hemisphaerica|type=transcript|length=2599bpRun BLAST on NCBI protein sequence of TCONS_00012546-protein >TCONS_00012546-protein ID=TCONS_00012546-protein|Name=TCONS_00012546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MSTRQVLQVFEQYQKARTTFVQTIAELATRPQNIEILQNAGVMALLRPLLRun BLAST on NCBI transcript from alignment at sc0000145:84870..103601- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012546 ID=TCONS_00012546|Name=TCONS_00012546|organism=Clytia hemisphaerica|type=transcript|length=18732bp|location=Sequence derived from alignment at sc0000145:84870..103601- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:84870..103601- >TCONS_00012546 ID=TCONS_00012546|Name=TCONS_00012546|organism=Clytia hemisphaerica|type=CDS|length=18396bp|location=Sequence derived from alignment at sc0000145:84870..103601- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012546 vs. Swiss-Prot (Human)
Match: SPAG6 (Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG6 PE=2 SV=1) HSP 1 Score: 857.055 bits (2213), Expect = 0.000e+0 Identity = 410/505 (81.19%), Postives = 457/505 (90.50%), Query Frame = 1
Query: 577 MSTRQVLQVFEQYQKARTTFVQTIAELATRPQNIEILQNAGVMALLRPLLLDVVPTVQQTAALALGRLANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVAKHSPELAQAVVDCGALEALVICLEEFDPGVKESAAWALGYVARHNAELSQAVVDAGAVPLLVLCIQEPELDLKRIAASALSDICKHSPELAQTVVDAGAVSHLAQMILNDDAKLKRQVFSALSQIAKHSVDLAEMVVEAEIFPAVLSSLTNTDEYVKKNVAMLIREVAKHTPELSQLIVNAGGLAAVINYIGDSHGNILLPGVMMLGYVGAHSENLAMSVILSKGVVQLSIVLSEEKEDHIKAAAAWALGQIGRHTPEHAKAVAIANVLPKLLNCYLSTESSEDLSTKAKKALKNVLQRCIHLPALEPLLHSAPSNILKHVVSQFSKILPHDPKARKVFVTSGGLKKIQELKPEPGSALHEYVNTINNCYPEEIVRYYSPGYSEKLLDRIEQYE 2091
MS RQVLQVFEQYQKART FVQ +AELATRPQNIE LQNAGVM+LLR LLLDVVPT+QQTAALALGRLANYNDDLAEAVVK DILPQLVYSLAEQNRFYKKAAAFVLRAV KHSP+LAQA+VDCGAL+ LVICLE+FDPGVKE+AAWAL Y+ARHNAELSQAVVDAGAVPLLVLCIQEPE+ LKRIAASALSDI KHSPELAQTVVDAGAV+HLAQMILN DAKLK Q+ SALSQ++KHSVDLAEMVVEAEIFP VL+ L + DEYVKKN + LIRE+AKHTPELSQL+VNAGG+AAVI+ IG GN LPG+MMLGYV AHSENLAM+VI+SKGV QLS+ LSEE EDHIKAAAAWALGQIGRHTPEHA+AVA+ N LP LL+ Y+STESSEDL K+KKA+KN+LQ+C +LPALEP L+ AP NILKHVV QFSK+LPHD KAR++FVTSGGLKK+QE+K EPGS L EY+N+IN+CYPEEIVRYYSPGYS+ LL R++ Y+
Sbjct: 1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLDVVPTIQQTAALALGRLANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQAIVDCGALDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEPEIALKRIAASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGGVAAVIDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAAAWALGQIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQVKSKKAIKNILQKCTYLPALEPFLYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSCYPEEIVRYYSPGYSDTLLQRVDSYQ 505 The following BLAST results are available for this feature:
BLAST of TCONS_00012546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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