|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012547 ID=TCONS_00012547|Name=TCONS_00012547|organism=Clytia hemisphaerica|type=transcript|length=1841bpRun BLAST on NCBI transcript from alignment at sc0000145:86408..103601- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012547 ID=TCONS_00012547|Name=TCONS_00012547|organism=Clytia hemisphaerica|type=transcript|length=17194bp|location=Sequence derived from alignment at sc0000145:86408..103601- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012547 vs. Swiss-Prot (Human)
Match: SPAG6 (Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG6 PE=2 SV=1) HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0 Identity = 349/421 (82.90%), Postives = 383/421 (90.97%), Query Frame = 1
Query: 577 MSTRQVLQVFEQYQKARTTFVQTIAELATRPQNIEILQNAGVMALLRPLLLDVVPTVQQTAALALGRLANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVAKHSPELAQAVVDCGALEALVICLEEFDPGVKESAAWALGYVARHNAELSQAVVDAGAVPLLVLCIQEPELDLKRIAASALSDICKHSPELAQTVVDAGAVSHLAQMILNDDAKLKRQVFSALSQIAKHSVDLAEMVVEAEIFPAVLSSLTNTDEYVKKNVAMLIREVAKHTPELSQLIVNAGGLAAVINYIGDSHGNILLPGVMMLGYVGAHSENLAMSVILSKGVVQLSIVLSEEKEDHIKAAAAWALGQIGRHTPEHAKAVAIANVLPKLLNCYLSTESSEDLSTKAKKALKNVLQRCIHLPALEPLL 1839
MS RQVLQVFEQYQKART FVQ +AELATRPQNIE LQNAGVM+LLR LLLDVVPT+QQTAALALGRLANYNDDLAEAVVK DILPQLVYSLAEQNRFYKKAAAFVLRAV KHSP+LAQA+VDCGAL+ LVICLE+FDPGVKE+AAWAL Y+ARHNAELSQAVVDAGAVPLLVLCIQEPE+ LKRIAASALSDI KHSPELAQTVVDAGAV+HLAQMILN DAKLK Q+ SALSQ++KHSVDLAEMVVEAEIFP VL+ L + DEYVKKN + LIRE+AKHTPELSQL+VNAGG+AAVI+ IG GN LPG+MMLGYV AHSENLAM+VI+SKGV QLS+ LSEE EDHIKAAAAWALGQIGRHTPEHA+AVA+ N LP LL+ Y+STESSEDL K+KKA+KN+LQ+C +LPALEP L
Sbjct: 1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLDVVPTIQQTAALALGRLANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQAIVDCGALDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEPEIALKRIAASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGGVAAVIDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAAAWALGQIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQVKSKKAIKNILQKCTYLPALEPFL 421 HSP 2 Score: 112.079 bits (279), Expect = 5.375e-26 Identity = 77/269 (28.62%), Postives = 141/269 (52.42%), Query Frame = 1
Query: 667 PQNIEILQNAGVMALLRPLLLDVVPTVQQTAALALGRLANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVAKHSPELAQAVVDCGALEALVICLEEFDPGVKESAAWALGYVARHNAELSQAVVDAGAVPLLVLCI-QEPELDLKRIAASALSDICKHSPELAQTVVDAGAVSHLAQMILNDDAKLKRQVFSALSQIAKHSVDLAEMVVEAEIFPAVLSSLTNTDEYVKKNVAMLIREVAKHTPELSQLIVNAGGLAAV 1470
P+ + + +AG +A L ++L+ ++ AL +++ ++ DLAE VV+ +I P ++ L +++ + KK A+ ++R +AKH+PEL+Q VV+ G + A++ C+ + LGYVA H+ L+ AV+ + VP L +C+ +EPE +K AA AL I +H+PE A+ V + L + ++ ++ QV K + ++ + PA+ L + + K+V +V H + +L V +GGL V
Sbjct: 199 PELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGGVAAVIDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAAAWALGQIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQV--------KSKKAIKNILQKCTYLPALEPFLYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKV 459 The following BLAST results are available for this feature:
BLAST of TCONS_00012547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.