TCONS_00012548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012548
Unique NameTCONS_00012548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012548 ID=TCONS_00012548|Name=TCONS_00012548|organism=Clytia hemisphaerica|type=transcript|length=1193bp
ACACACATGGCTTCttgtaggcttctgctcatcctctagcgaaaaaagtt
tcttatattCTATATGGGAAGTTTATCTATAGAAGTCAACGATTCAGACT
AGGCTTCTTGCAGTAAAGCAGAAGGACGTAGAAAGGTATGGCTAACAAAT
ACGACAACGATCAACCACCGGACAGTAAATTCAACATCGACGACGACGAC
GATTTGAGTACGGCTATAACTGTATTAGTTCCTGTGCTGTCATTCATAGT
TTTCCCGTTCATGATCTACCTCTGCTATTCTTGCtaccaaagaaaatgtt
tgaaagacCGTATGAAAATTGCAAGTATACTGTCTTTGTATTATTACATA
GcaATGGTGGCATCTTTAGTATTCATTGTCATCTACAGTTACACGTCAAT
TGGTGATTATGGGGAATATACGATCTACAATGTGTTTGTTGTTGCTATTC
CTTTAGCATGTTTTGGTTATGTTTTCGTACTCATTGAATCTTGGTGTTAC
TCAAATATGATGGGATACTTAAGATTCAAATTCAATGTTGAAGATCTGAT
GCACTATATTCAAGGTCTTGTTCAACGAAGACCTAACGTGGTAACAGTGG
CACAGGCCTCCCACATCGAATCTGAAAGCAGAGTGGTCGCTCGACAAGAC
AGTAATGGCAATACTCAATATGTAACTCAAACCACCTCTAAGAAAGTGAT
AAGTTGGGAAGGACATGATGTTTTCCCGTTTAACTACTGGCAAGATGTAT
CCGATAAAAGTAACATTCCCAAATCTTATGGCGAGGTGGTCAGAGTAAAG
CTGACAAAAAAGATTCTCTTTGCCAATGAGGTCACTGAAAGAGCATTTCG
CACCCAGCAAGACGCTTTTGTCGAGAGAAACAAGCATAGAGATGATAAAT
TTGAATTCTGGACTGATTATGAAATATCAGGCTTCCAGGATCATATTTTG
TATTATGATCCACAAAAAGGGATGCCATTTTGGATGGATTGGCTTTGTTT
TGGTTGCGTCGCTTTTATCGGTTTCTCCTGGCCATACCGGTGTTTGTTCT
TTTGTTGCACCAAAACGGCCAGCTTTGATATCGAAAAAGTTGTTTCACTT
ACTCCTATTTCACAGAGCGAAACACAAGCTCAGGTCGAAGTTAGCTGCGT
GCAACCCATGCCGAAATCACCGCCCATCTTAGGACCACCACCA
Run BLAST on NCBI

protein sequence of TCONS_00012548-protein

>TCONS_00012548-protein ID=TCONS_00012548-protein|Name=TCONS_00012548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MANKYDNDQPPDSKFNIDDDDDLSTAITVLVPVLSFIVFPFMIYLCYSCY
QRKCLKDRMKIASILSLYYYIAMVASLVFIVIYSYTSIGDYGEYTIYNVF
VVAIPLACFGYVFVLIESWCYSNMMGYLRFKFNVEDLMHYIQGLVQRRPN
VVTVAQASHIESESRVVARQDSNGNTQYVTQTTSKKVISWEGHDVFPFNY
WQDVSDKSNIPKSYGEVVRVKLTKKILFANEVTERAFRTQQDAFVERNKH
RDDKFEFWTDYEISGFQDHILYYDPQKGMPFWMDWLCFGCVAFIGFSWPY
RCLFFCCTKTASFDIEKVVSLTPISQSETQAQVEVSCVQPMPKSPPILGP
PP
Run BLAST on NCBI

transcript from alignment at sc0000145:156860..159666-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012548 ID=TCONS_00012548|Name=TCONS_00012548|organism=Clytia hemisphaerica|type=transcript|length=2807bp|location=Sequence derived from alignment at sc0000145:156860..159666- (Clytia hemisphaerica)
ACACACATGGCTTCTTGTAGGCTTCTGCTCATCCTCTAGCGAAAAAAGTT
TCTTATATTCTATATGGGAAGTTTATCTATAGAAGTCAACGATTCAGACT
AGGCTTCTTGCAGTAAAGCAGAAGGACGTAGAAAGGTATGGCTAACAAAT
ACGACAACGATCAACCACCGGACAGTAAATTCAACATCGACGACGACGAC
GATTTGAGTACGGCTATAACTGTATTAGTTCCTGTGCTGTCATTCATAGT
TTTCCCGTTCATGATCTACCTCTGCTATTCTTGCTACCAAAGAAAATGTT
TGAAAGACCGTATGAAAATTGCAAGTATACTGTCTTTGTATTATTACATA
GGTAAGTTTGATACACTTTTTTATATTAACCCTTTAAGTGGTTAAAAAAC
GGTCAAAATCTTAAAAAAGTGAATTTTTGTCCTTTTTTTTGACTTTTTGG
CTTTAAAGGTTTAAAATCTCTCTAGAAAGACTCACTTTTGATTTTTTTTT
GCTTGACCATGAAGCCCATTCCAATTTCTACGAGTTAGACCAAAAATTAC
GATTTTTAACTAAAACTAGGCATCATAGGATAGCTTCGCCCTCCTACATA
GCTCATGTCTGATATATACAACATTGCCACTTAAAGGGTTAAGAACCAGT
AAAATTTGAGTGGAGTAAATCAGAATATGTGTCAATTTTGTGAAAAAATC
AGCTAGTTTTTAGAAAAAGTTGATTTTTTCGGTCTGTAGAATACACATAA
TGCGATTGACAGATAGAATTGATTACCTAGTTAAAGTACCTCTTGTACCA
TGACTATGTAATTGACATAATTGTATAATGAATTTCTTAAAAATCACTAT
TATTGACATAATTGTATAATGAATTTCTTAAAAATCACTATTCTGGTCTG
TAAAATAGATATTATAAAGGTATTTCCCCTAGGGCGCTGGTTTAGTTCAA
ATAGTATTTGGAGGGTTTCATAGTGTTGCTAGCAAGGTAGCAGAACCATA
TTTGACCCCCTAATATGCAGTTTGCAGTTAAAAAAAACAAAGTAATTTTT
TCAAAATGTTCTGCTAATCTGGTCTGTAAAATTCACTTAAGTCATGTGAT
CAACTCAAAAATTTTCTCGAATAATATTCGACATATTTACTTCACTCTTG
CAAATTTTCAAAGTGATACGTTATGTATTTGTTAAGATATGACCCTTTTT
CAGGCCATTCTTTTTTGAAAATATTCATTTTGAAGATCCAACTGCTTTTA
CTTAGGGGGTCAGAAATCTTGGTAATGAAACTTAAAAAAGGTCTACTATC
ATTCTTCTGACGCTCCAATACCTAACCTTTCGAGTGGTATACATCACAAT
TGCTCCCTTTTTTGATACCTATGCCCTTATCTCAAATCAAGAGAGACAAA
TCAAAACCTTCTATGTCGCAGTTAATAACAGCATACGTATAAACTCACTA
TATAAAGCCCTAAATTACTGTACTGTGGTTATCATCCTTGATTCCCGCCT
GGGAGGCCTGAGTTCGATACCCACCGTGTCTCTACATGTCTCACTTGGCA
ATTGAATATACCTTCGCCCTAATGAAAAGGAAGCCATGTGAGAGGAATTG
GGTACCATTACTCTGATACGAGATTAGATAGACATTGTGACGTGCCATGA
CACTCATAAGGTTTGACCTCGCGTGAGCACCGCTCTTCCAGTGTCGTTCG
AGTATCATGGTATACGCCATGGCTTGATAGCTCGCGTCTGTCAAGTCTCA
GTGTCTGTCAGCACCGCGATTCCCACTCCTTCGTGGGTAGGACTATCCCG
AATGCATTCGCNGTCAAGTCTCAGTGTCTGTCAGCGCCGTGATTCCCACT
CCTTCATGGGTAGGACTATCCCGACTGCATTCGGAGGGCTCATATCTAAA
TTACTGTACTCAACAGAATATAAACAACTTGAAGAAGATAAAATCGATTT
TTAATTTCTTTTTAGCAATGGTGGCATCTTTAGTATTCATTGTCATCTAC
AGTTACACGTCAATTGGTGATTATGGGGAATATACGATCTACAATGTGTT
TGTTGTTGCTATTCCTTTAGCATGTTTTGGTTATGTTTTCGTACTCATTG
AATCTTGGTGTTACTCAAATATGATGGGATACTTAAGATTCAAATTCAAT
GTTGAAGATCTGATGCACTATATTCAAGGTCTTGTTCAACGAAGACCTAA
CGTGGTAACAGTGGCACAGGCCTCCCACATCGAATCTGAAAGCAGAGTGG
TCGCTCGACAAGACAGTAATGGCAATACTCAATATGTAACTCAAACCACC
TCTAAGAAAGTGATAAGTTGGGAAGGACATGATGTTTTCCCGTTTAACTA
CTGGCAAGATGTATCCGATAAAAGTAACATTCCCAAATCTTATGGCGAGG
TGGTCAGAGTAAAGCTGACAAAAAAGATTCTCTTTGCCAATGAGGTCACT
GAAAGAGCATTTCGCACCCAGCAAGACGCTTTTGTCGAGAGAAACAAGCA
TAGAGATGATAAATTTGAATTCTGGACTGATTATGAAATATCAGGCTTCC
AGGATCATATTTTGTATTATGATCCACAAAAAGGGATGCCATTTTGGATG
GATTGGCTTTGTTTTGGTTGCGTCGCTTTTATCGGTTTCTCCTGGCCATA
CCGGTGTTTGTTCTTTTGTTGCACCAAAACGGCCAGCTTTGATATCGAAA
AAGTTGTTTCACTTACTCCTATTTCACAGAGCGAAACACAAGCTCAGGTC
GAAGTTAGCTGCGTGCAACCCATGCCGAAATCACCGCCCATCTTAGGACC
ACCACCA

Coding sequence (CDS) from alignment at sc0000145:156860..159666-

>TCONS_00012548 ID=TCONS_00012548|Name=TCONS_00012548|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0000145:156860..159666- (Clytia hemisphaerica)
CAATGGTGGCATCTTTAGTATTCATTGTCATCTACAGTTACACGTCAATT
GGTGATTATGGGGAATATACGATCTACAATGTGTTTGTTGTTGCTATTCC
TTTAGCATGTTTTGGTTATGTTTTCGTACTCATTGAATCTTGGTGTTACT
CAAATATGATGGGATACTTAAGATTCAAATTCAATGTTGAAGATCTGATG
CACTATATTCAAGGTCTTGTTCAACGAAGACCTAACGTGGTAACAGTGGC
ACAGGCCTCCCACATCGAATCTGAAAGCAGAGTGGTCGCTCGACAAGACA
GTAATGGCAATACTCAATATGTAACTCAAACCACCTCTAAGAAAGTGATA
AGTTGGGAAGGACATGATGTTTTCCCGTTTAACTACTGGCAAGATGTATC
CGATAAAAGTAACATTCCCAAATCTTATGGCGAGGTGGTCAGAGTAAAGC
TGACAAAAAAGATTCTCTTTGCCAATGAGGTCACTGAAAGAGCATTTCGC
ACCCAGCAAGACGCTTTTGTCGAGAGAAACAAGCATAGAGATGATAAATT
TGAATTCTGGACTGATTATGAAATATCAGGCTTCCAGGATCATATTTTGT
ATTATGATCCACAAAAAGGGATGCCATTTTGGATGGATTGGCTTTGTTTT
GGTTGCGTCGCTTTTATCGGTTTCTCCTGGCCATACCGGTGTTTGTTCTT
TTGTTGCACCAAAACGGCCAGCTTTGATATCGAAAAAGTTGTTTCACTTA
CTCCTATTTCACAGAGCGAAACACAAGCTCAGGTCGAAGTTAGCTGCGTG
CAACCCATGCCGAAATCACCGCCCATCTTAGGACCACCACCAATGGCTAA
CAAATACGACAACGATCAACCACCGGACAGTAAATTCAACATCGACGACG
ACGACGATTTGAGTACGGCTATAACTGTATTAGTTCCTGTGCTGTCATTC
ATAGTTTTCCCGTTCATGATCTACCTCTGCTATTCTTGCTACCAAAGAAA
ATGTTTGAAAGACCGTATGAAAATTGCAAGTATACTGTCTTTGTATTATT
ACATAGCAATGGTGGCATCTTTAGTATTCATTGTCATCTACAGTTACACG
TCAATTGGTGATTATGGGGAATATACGATCTACAATGTGTTTGTTGTTGC
TATTCCTTTAGCATGTTTTGGTTATGTTTTCGTACTCATTGAATCTTGGT
GTTACTCAAATATGATGGGATACTTAAGATTCAAATTCAATGTTGAAGAT
CTGATGCACTATATTCAAGGTCTTGTTCAACGAAGACCTAACGTGGTAAC
AGTGGCACAGGCCTCCCACATCGAATCTGAAAGCAGAGTGGTCGCTCGAC
AAGACAGTAATGGCAATACTCAATATGTAACTCAAACCACCTCTAAGAAA
GTGATAAGTTGGGAAGGACATGATGTTTTCCCGTTTAACTACTGGCAAGA
TGTATCCGATAAAAGTAACATTCCCAAATCTTATGGCGAGGTGGTCAGAG
TAAAGCTGACAAAAAAGATTCTCTTTGCCAATGAGGTCACTGAAAGAGCA
TTTCGCACCCAGCAAGACGCTTTTGTCGAGAGAAACAAGCATAGAGATGA
TAAATTTGAATTCTGGACTGATTATGAAATATCAGGCTTCCAGGATCATA
TTTTGTATTATGATCCACAAAAAGGGATGCCATTTTGGATGGATTGGCTT
TGTTTTGGTTGCGTCGCTTTTATCGGTTTCTCCTGGCCATACCGGTGTTT
GTTCTTTTGTTGCACCAAAACGGCCAGCTTTGATATCGAAAAAGTTGTTT
CACTTACTCCTATTTCACAGAGCGAAACACAAGCTCAGGTCGAAGTTAGC
TGCGTGCAACCCATGCCGAAATCACCGCCCATCTTAGGACCACCACCAAT
GGCTAACAAATACGACAACGATCAACCACCGGACAGTAAATTCAACATCG
ACGACGACGACGATTTGAGTACGGCTATAACTGTATTAGTTCCTGTGCTG
TCATTCATAGTTTTCCCGTTCATGATCTACCTCTGCTATTCTTGCTACCA
AAGAAAATGTTTGAAAGACCGTATGAAAATTGCAAGTATACTGTCTTTGT
ATTATTACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007040XLOC_007040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012548-proteinTCONS_00012548-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012548-exon-sc0000145-1575043694:159316..159666TCONS_00012548-exon-sc0000145-1575043694:159316..159666Clytia hemisphaericaexon
TCONS_00012548-exon-sc0000145-1575043694:156860..157701TCONS_00012548-exon-sc0000145-1575043694:156860..157701Clytia hemisphaericaexon
TCONS_00012548-exon-sc0000145-1510915933:159316..159666TCONS_00012548-exon-sc0000145-1510915933:159316..159666Clytia hemisphaericaexon
TCONS_00012548-exon-sc0000145-1510915933:156860..157701TCONS_00012548-exon-sc0000145-1510915933:156860..157701Clytia hemisphaericaexon
TCONS_00012548-exon-sc0000145-1491911889:159316..159666TCONS_00012548-exon-sc0000145-1491911889:159316..159666Clytia hemisphaericaexon
TCONS_00012548-exon-sc0000145-1491911889:156860..157701TCONS_00012548-exon-sc0000145-1491911889:156860..157701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:156860..159666 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0351637	0.0816629	0.039972	0.291902	0	0.788174	1.47599	1.51929	4.85529	2.52044	1.51288	10.8144	6.02634	8.3152	9.91071	1.81384	2.16447	8.17005	12.1923	0.174448	0.612119	0.661773	1.05247	3.00994	3.55844	0.990414	1.74113	1.64133	0.48963
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026767Tmem151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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