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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012550 ID=TCONS_00012550|Name=TCONS_00012550|organism=Clytia hemisphaerica|type=transcript|length=661bp
GTTTACTCTCCAGTCAATGCAGTCAGGGCAATCTGGTTAGTAGACACAGA
GCAAGGAAAGGAATATCTTTaacgaaaataactttttatagtTGTAATAC
AAGGTAACACGGatggttttcttttttgaaaaactttcagCAATAAATAC
AAGAAGACTTACAACGCACAATATAGAACATATACATACTCAAGAAGTTC
TGTCTAAGCAAAAGAATCTTAGGTTAAAACTGTTTTCAGCAATACACATT
CAATCATGTTGCTATGGGAAGCTTTGGTAATAGTCATCACCAGTTTGTCC
AGTATCAGTGGAAATCAAGTTCTCGTTTACGATAATATGCGATACGTTTA
CAGTGCTGGTTCAGCAAATTGGCAAGATGCAGAGAACGCATGTGTGGCTC
TGGGAGGCCATTTGGCCAGTATTCACACGTTTCCTGAAAGTGAGTTTTTG
GATCAAATTAGTGGAAGCGAAAATTGGGTAGGTGGATATCGGGAAACAGT
CAGCAGTCCATGGCAATGGACAGATGAAACATGTTTCTCATACACTGATT
GGGAAACTGACAGAGAAACTGAACTTTGTTTACAAAGTGGTAACCTTGAC
CACTTGTCTTGGTGGTTTGATGCAGATTGTAATGCAGTCAAAAGATATAT
ATGCAAACTTG Run BLAST on NCBI transcript from alignment at sc0000145:170362..173993- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012550 ID=TCONS_00012550|Name=TCONS_00012550|organism=Clytia hemisphaerica|type=transcript|length=3632bp|location=Sequence derived from alignment at sc0000145:170362..173993- (Clytia hemisphaerica)
GTTTACTCTCCAGTCAATGCAGTCAGGGCAATCTGGTTAGTAGACACAGA
GCAAGGAAAGGAATATCTTTAACGAAAATAACTTTTTATAGTTGTAATAC
AAGGTAACACGGATGGTTTTCTTTTTTGAAAAACTTTCAGCAATAAATAC
AAGAAGACTTACAACGCACAATATAGAACATATACATACTCAAGAAGTTC
TGTCTAAGCAAAAGAATCTTAGGTTAAAACTGTTTTCAGCAATACACATT
CAATCATGTTGCTATGGGAAGCTTTGGTAATAGTCATCACCAGTTTGTCC
AGTATCAGTGGTGAGGGAACTGAGTATTTATATTATTTATTACCTTATCG
GCCAAAACTTAGTCGGCCTTAATTTTAGTCGCGGCCTAAATTATTAGTCG
GCCCTAATTTTAGTCACCTCGTCAAAATTTAGTCACTAAGGGCCGACTAA
TAATTAAGACTGACTAACTAACTGTAACTTTGTTAAAGTAATACCGATAT
GAACAATAGACATTAGAACATCTTTAAACATCTAAACTACTATGACAAAT
CTTGCGTCCCTAAGAAATATAACCAGCGAGGGAGACATACACGTTTTTTT
TATTAGAACACCTAAAATTTGGCTGAGCCTGGATGTGCTAATTTTTTTAG
CAATTTTCAGCCTGAAATGTTCTTGATGCGTTTTTAAATTTTCAGACTAC
TCTAAATCGACAATATCATGCAAAATAAAGAGCACTTAAAATTGGTAAAA
TTTGGACAATATTTGACTCTCGATTTAGAAAATCCATTCCTAAGTTTGTT
TAAAACTGCTTGAAAAGAGGAAAAAATTGTATTTTCTGGGCATGTTCTTA
CGATGTTCTTAATTTTTCGACGAATTTTAGCTTCAATGTTCTTATAAACT
GGGTTCTAATAAAAGAAAAAACGTGTATGAGAACGCACGACTCTGAATTA
GTAGTAATCTTTGGGAACGATGGTGTTTGCGGTCCGCAGAGTAACTCCCT
ATACTATCGGGACATTAAGCAGTGGAATAGTTTGCCTTCAAAAGTAGTCA
ACTCATCCTCAGTTCAAAAATTTAAAGAGACCCTAAGTGTAGCCTGGATC
AGTGAACTGTTATCAGATAGAATAATATCTCACTTTGGCTACTTCATCAT
CTGTTCAGATTCCCTTTGTTAAAAGTCTCTATATAAGGGTATGTTTGCAC
GGTATTTTTTCTCAGTTACGAAATTTTTAGTTTTGGAAAACGAGTTGAAA
TTTAGTGATTCCATCGATTTTAACTCCTAAAATTAAAAAATCAATTTTAG
TCTATATGGAAAGAATAACTAATTTAGGTTTAAAACTTGACGCCCAAATG
TCTTTTCTTAGAAGTGCGCTTTTAAATAGTTTTCAACACTGGCGAATCTA
TAAAATGAGCTGATTTCAAATATGTAATTCTTATTTGCATTGAAGGGCGA
CCGAAGTGCCCGAAATTTCCAGTTGAAAATAATCAAATTATGTGCATAGT
TTTTTGAGAATTCAAAAGAATCCAATCAAGCTTGAGAAAATATACAATTG
AAATACGATAAAGAACAAAGAAATGACATTATCATTGCACACGTGCAATT
GAATTCTCATTGCAACTAAGGGACACGCTTACAGACACGCTTCATTTTGA
GGAAAAAAGCATGAATTCATTCTGATAATAATTCTATGCCTGGATAGATA
AAAGTTTGAATATGATTGAAAGTGTCACTATTGTTGCATACCTGTCTATA
TTATAACAATATAATAATTAACCCAAAATGTATGAGCGATTCATAGAGGC
CTACACGTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGA
GGCCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAGGCT
TTGGAGACTTAAAAACATGCATTTTCTTAAAAAATTACATCAAAATGCTC
AAAAAATGCTGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAAT
ACAAAAAACGAAGAACATCCGAAGGCTTCGGAAATTTTTGACGTTCTTAT
AAAAAAAAACGTGTATGTGTCCGCACGGTGACCGGCGAATTTGTAAAACT
ATATTATTTATAATTATGAAAGTGGGTTAAGGAAAGCTTGATCGTAACCT
TTTAATTTGGACCGAATTTTTAGTCAGCCCAAATTTAGTCACTTAGGGCC
GACTAAGTTTTAGCCGATAAGGTATTACGAGGGCTACATACATCATAGTA
TAAGAAAGTTGCAGCTGGATAATAACATCTGAATTTCTCTTGTTCTACCT
CTGTCGTATTTGATGACTATTCGTAGAACAAGAAATCAGTAATGTAGCAT
CTTTAATGGTCAATTTTATTGGTTTGTCGCTAATACTTACTTCTCAGTGC
GTTTTAGACATGAATATTACGCCCTTGATCACAGGGAAAATGTTCGAATT
CCATGGCTGTAAAAATACCATTTTCAGGTTGGAATTTATTTTTACAATGG
AATTTTTTTGCTTGATTTTCAAACTATGACTCTTTACTCAGGAAATCAAG
TTCTCGTTTACGATAATATGCGATACGTTTACAGTGCTGGTTCAGCAAAT
TGGCAAGATGCAGAGAACGCATGTGTGGCTCTGGGAGGCCATTTGGCCAG
TATTCACACGTTTCCTGAAAGTGAGTTTTTGGATCAAATTAGTGGAAGGT
TAGTGATTATGTTAAAAAAGCGTGCATCTCGCATCCCCTCCCCACATTTT
AAAGAAAATTGAAACAGGTTACCCTACCCCAAATTTGGGGTAACTCTCGG
ACGGGAATTCTATAAACGATACGCATCCCCTGATATCAAAACATATCAGA
GGGGATACGTGCAGCCTACTTTATTAAAGGAAGAAATTTTCGCGGAGTAA
ACTTTCACGAGTTCGCGATTTTTCAGCCAAATCGCAAATAATAAGTTCCG
CGAAAAATGCCGAAGGTCGCTATTCCCTAAAGTTAAATCCCACGAAATAT
GGTCAAATTCGTCATTTGCGAGAGTTAATTCCCGCGAAATGCGTATCTTA
CTGGCCCTACAGGAAGAAAAATGAACTCCTAGGTCACGTTAATATATTCT
AGTTTGTGTTTGTTCATATCTTTAGAAGGAGCATAATTAGAGTAGATAAA
AGTTATGAACATTATAATCAAAACTTGTCTTTTCTTTGATTCATTGAAAA
TATTTTACTTGGATTGGCGTCATTCACGAAGGTAAACTCCCAGAATTTCG
CCATTTTGTTATCTCGCGAAAGTTTCTTCCTTTAAAATTTAAAATAGCTC
TTGCTTGGCTATTTTCAATGCCGGTATCTGAAGTTACTAGGGTATTTACT
GAGTCCGACCCTTAAAGAGACTAATTTCGGCAAAAAGGTAACTGAGAGAA
TCAATATAATCCATCACTGGTATGTTCATTAATTTCAGCGAAAATTGGGT
AGGTGGATATCGGGAAACAGTCAGCAGTCCATGGCAATGGACAGATGAAA
CATGTTTCTCATACACTGATTGGGAAACTGACAGAGAAACTGAACTTTGT
TTACAAAGTGGTAACCTTGACCACTTGTCTTGGTGGTTTGATGCAGATTG
TAATGCAGTCAAAAGATATATATGCAAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012550-exon-sc0000145-1575043694:173684..173993 | TCONS_00012550-exon-sc0000145-1575043694:173684..173993 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1575043694:171296..171452 | TCONS_00012550-exon-sc0000145-1575043694:171296..171452 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1575043694:170362..170555 | TCONS_00012550-exon-sc0000145-1575043694:170362..170555 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1510915933:173684..173993 | TCONS_00012550-exon-sc0000145-1510915933:173684..173993 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1510915933:171296..171452 | TCONS_00012550-exon-sc0000145-1510915933:171296..171452 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1510915933:170362..170555 | TCONS_00012550-exon-sc0000145-1510915933:170362..170555 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1491911889:173684..173993 | TCONS_00012550-exon-sc0000145-1491911889:173684..173993 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1491911889:171296..171452 | TCONS_00012550-exon-sc0000145-1491911889:171296..171452 | Clytia hemisphaerica | exon |
| TCONS_00012550-exon-sc0000145-1491911889:170362..170555 | TCONS_00012550-exon-sc0000145-1491911889:170362..170555 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:170362..173993 - |
Blast
The following BLAST results are available for this feature:
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