TCONS_00012552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012552
Unique NameTCONS_00012552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012552 ID=TCONS_00012552|Name=TCONS_00012552|organism=Clytia hemisphaerica|type=transcript|length=1503bp
TTTAGATCTTATAAATacaaagcaaataaaaattaacaagATATAGAAAA
AGGAAATCGATATGTTACTGCAATCCTTCTTTCCAAGGATGCATGCTAGA
TCACCAATCAAAAGGCTTATGTCAACCTTTCTCAATCAAAACGTTAGCCA
GCAACAAATCCAACAACTCAACGATCAAATCCCTCATGTCAATTCATCAG
ATGAAGTCATTGGCCCTGTCAGTAAAAAAGACAGCCATGTGCGACCTCAA
GGCGCCGAAGGGACTGGTCTTCTACATAGAGCTTTCAGTGTGTTTTTATT
CAACTCTGAGCGACAGTTATTACTGCAACAAAGGTCATCGTCCAAAATCA
CGTTTCCAGATTATCTAACAAACACTTGCTGTAGTCACCCACGTTTTAAC
GATGACGAGCTCAATGAAAAATACAACGTGGGCATCAAAATAGCGGCGCA
ACGGAGATTGAAATTCGAACTAGGAATTACTAAGGATCAGGTACCGTTGG
AATCATTCACACATTTAACACGTATTCACTATAGCGGAAATTCAGACGAG
AATTGGTGTGAACATGAAATAGATCACGTCCTCATCTGTCAAAAAGACGT
CCATTTAGAACCTAATCTTGATGAGGTTCAAAAATGTTACTATGTGACTC
AGGATGAACTCGAAACGTTGTTACGCACTGCCGATGACGCTGGCATACTT
TTAACACCTTGGTTTCGGTATATCTCAAATACATTCTTGTTTCAATGGTG
GAACAACTTGGATGATTTGTCTTCTTTTAAAGATGATGTGATACACAGGG
CTGGCCATCAACCTTGAACTCCGAATGTCTGGTTTTCAACATTGGTAGAA
TTCGTTCCCGAAGCACTGCGTCAGTGATAGCTGTACTATCGGCGCACGGC
GCACAAGATTACCAATTTGATACCAATACTGCCAATCAATAGGAGTGGat
tgaatgaaaatggaaatagaaagtttgattgtttttgatcgagtctgcta
aattgcgtggattgcgtattttgacccacgcacccacgcaaaaatattga
cccacgaACCGACGCACTCACGTAACCTACGCACGCACGCAcgcacgcaa
tttagcagactcttttTGATCAGCTTCCATGATAAGACTTGCTTTTCCGG
AAATTGTAGTCACGGGTCTTTGAGTTGGTTTTATGTGTTAAGACATTGGG
CGAGAAACTATACGTCACTTTGGGATATCAAGCATTGACCAAAAACCCTT
GTACTTGTTACAATATATTGGATAGAAAAATTCAGAGAGTACTTATTACA
AAAAACACACGCAATTTTTATTCTAATAAATTCTGGTACTGATGATTGGT
GCCTGAGCACCATGAaacttagcctggatatccaggctgtaaactatttc
acagtctactttttgatattttatgttctggtttacagcctggtctccct
agagcgatttgcattctctttaagagaatgcagtccgcttgcttgcgctc
act
Run BLAST on NCBI

protein sequence of TCONS_00012552-protein

>TCONS_00012552-protein ID=TCONS_00012552-protein|Name=TCONS_00012552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MLLQSFFPRMHARSPIKRLMSTFLNQNVSQQQIQQLNDQIPHVNSSDEVI
GPVSKKDSHVRPQGAEGTGLLHRAFSVFLFNSERQLLLQQRSSSKITFPD
YLTNTCCSHPRFNDDELNEKYNVGIKIAAQRRLKFELGITKDQVPLESFT
HLTRIHYSGNSDENWCEHEIDHVLICQKDVHLEPNLDEVQKCYYVTQDEL
ETLLRTADDAGILLTPWFRYISNTFLFQWWNNLDDLSSFKDDVIHRAGHQ
P
Run BLAST on NCBI

transcript from alignment at sc0000145:196134..198514-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012552 ID=TCONS_00012552|Name=TCONS_00012552|organism=Clytia hemisphaerica|type=transcript|length=2381bp|location=Sequence derived from alignment at sc0000145:196134..198514- (Clytia hemisphaerica)
TTTAGATCTTATAAATACAAAGCAAATAAAAATTAACAAGATATAGAAAA
AGGAAATCGATATGTTACTGCAATCCTTCTTTCCAAGGATGCATGCTAGA
TCACCAATCAAAAGGCTTATGTCAACCTTTCTCAATCAAAACGTTAGCCA
GCAACAAATCCAACAACTCAACGATCAAATCCCTCATGTCAATTCATCAG
ATGAAGTCATTGGCCCTGTCAGTAAAAAAGACAGCCATGTGCGACCTCAA
GGCGCCGAAGGGACTGGTCTTCTACATAGAGCTTTCAGTGTGTTTTTATT
CAACTCTGAGCGACAGTTATTACTGCAACAAAGGTCATCGTCCAAAATCA
CGTTTCCAGATTATCTAACAAACACTTGCTGTAGTCACCCACGTTTTAAC
GATGACGAGCTCAATGAAAAATACAACGTGGGCATCAAAATAGCGGCGCA
ACGGAGATTGAAATTCGAACTAGGAATTACTAAGGATCAGGTACTTCTTT
TAGTTTCTTTGAAAAAAAAAGAGCGTTAAAGCCCACTCGCTCGTTTTTGC
TACAATGTGCAGACACGACGCAACGGTACGGCAGGTACGACTGCCGCTGT
ACCCGATTTTCACAAAAAAAAACTGAAATTTTCCTCTTCGTTGGTAAAAT
CGCTATAAGATAGCTTAATTTTCCTCATTCGTCTTGCCTGATGTGAAAAT
CATCTCAGCGAAATTAGACTTCCATTGAGAGTAGTTTACACATAGTAGCA
AAAAACGCTTAAAGCGAATGTACTTTACTCAATACACCTTTTCGACCGTA
GCTGCCAATTGCCGCGCGGGCACTTTTTTGTCTGTTTTACCACCCTAAAA
CCATCCCAGACTTTTTTTCGCACCTGGATAGACAATAGAAAAAGGTGTAA
AAATAGGTTTGGATCGAGTTTATGGGGATAAGTAAATAATTAAGTGGCGC
GCACCTGGCCGCACGACTACGGCCGAAAAGCGTGTATTTCATAATATTTA
TTCTTGACCGAATAAGGCAACTTTGTTCTTATCTTCTTTTTTTCGAATTC
AATTCTATACAGCCATTTGAAATTACGCTCATAAATTATTTCAACAGATT
TAGGCCAATAATTGGTTTCTAATTATCATTTTGGGCACTGTTGACATTCG
GCTTAACGAACACTTTAAAATTGAGATTTCTTTTAAACAATAGAATTGAC
CTTCGAAAGCAAATAATTTAGCCTTAGGTTTGTTGGGGCACACTACGCTC
TTGTACATACCAAGGAAGCCTTAAAATGTTCGTAACTTGTCCTGAATATT
TGGCCATAGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAACGT
GTATTTGATCATAATCAGGTACCGTTGGAATCATTCACACATTTAACACG
TATTCACTATAGCGGAAATTCAGACGAGAATTGGTGTGAACATGAAATAG
ATCACGTCCTCATCTGTCAAAAAGACGTCCATTTAGAACCTAATCTTGAT
GAGGTTCAAAAATGTTACTATGTGACTCAGGATGAACTCGAAACGTTGTT
ACGCACTGCCGATGACGCTGGCATACTTTTAACACCTTGGTTTCGGTATA
TCTCAAATACATTCTTGTTTCAATGGTGGAACAACTTGGATGATTTGTCT
TCTTTTAAAGATGATGTGATACACAGGGCTGGCCATCAACCTTGAACTCC
GAATGTCTGGTTTTCAACATTGGTAGAATTCGTTCCCGAAGCACTGCGTC
AGTGATAGCTGTACTATCGGCGCACGGCGCACAAGATTACCAATTTGATA
CCAATACTGCCAATCAATAGGAGTGGATTGAATGAAAATGGAAATAGAAA
GTTTGATTGTTTTTGATCGAGTCTGCTAAATTGCGTGGATTGCGTATTTT
GACCCACGCACCCACGCAAAAATATTGACCCACGAACCGACGCACTCACG
TAACCTACGCACGCACGCACGCACGCAATTTAGCAGACTCTTTTTGATCA
GCTTCCATGATAAGACTTGCTTTTCCGGAAATTGTAGTCACGGGTCTTTG
AGTTGGTTTTATGTGTTAAGACATTGGGCGAGAAACTATACGTCACTTTG
GGATATCAAGCATTGACCAAAAACCCTTGTACTTGTTACAATATATTGGA
TAGAAAAATTCAGAGAGTACTTATTACAAAAAACACACGCAATTTTTATT
CTAATAAATTCTGGTACTGATGATTGGTGCCTGAGCACCATGAAACTTAG
CCTGGATATCCAGGCTGTAAACTATTTCACAGTCTACTTTTTGATATTTT
ATGTTCTGGTTTACAGCCTGGTCTCCCTAGAGCGATTTGCATTCTCTTTA
AGAGAATGCAGTCCGCTTGCTTGCGCTCACT

Coding sequence (CDS) from alignment at sc0000145:196134..198514-

>TCONS_00012552 ID=TCONS_00012552|Name=TCONS_00012552|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000145:196134..198514- (Clytia hemisphaerica)
GTACCGTTGGAATCATTCACACATTTAACACGTATTCACTATAGCGGAAA
TTCAGACGAGAATTGGTGTGAACATGAAATAGATCACGTCCTCATCTGTC
AAAAAGACGTCCATTTAGAACCTAATCTTGATGAGGTTCAAAAATGTTAC
TATGTGACTCAGGATGAACTCGAAACGTTGTTACGCACTGCCGATGACGC
TGGCATACTTTTAACACCTTGGTTTCGGTATATCTCAAATACATTCTTGT
TTCAATGGTGGAACAACTTGGATGATTTGTCTTCTTTTAAAGATGATGTG
ATACACAGGGCTGGCCATCAACCTTGAATGTTACTGCAATCCTTCTTTCC
AAGGATGCATGCTAGATCACCAATCAAAAGGCTTATGTCAACCTTTCTCA
ATCAAAACGTTAGCCAGCAACAAATCCAACAACTCAACGATCAAATCCCT
CATGTCAATTCATCAGATGAAGTCATTGGCCCTGTCAGTAAAAAAGACAG
CCATGTGCGACCTCAAGGCGCCGAAGGGACTGGTCTTCTACATAGAGCTT
TCAGTGTGTTTTTATTCAACTCTGAGCGACAGTTATTACTGCAACAAAGG
TCATCGTCCAAAATCACGTTTCCAGATTATCTAACAAACACTTGCTGTAG
TCACCCACGTTTTAACGATGACGAGCTCAATGAAAAATACAACGTGGGCA
TCAAAATAGCGGCGCAACGGAGATTGAAATTCGAACTAGGAATTACTAAG
GATCAGGTACCGTTGGAATCATTCACACATTTAACACGTATTCACTATAG
CGGAAATTCAGACGAGAATTGGTGTGAACATGAAATAGATCACGTCCTCA
TCTGTCAAAAAGACGTCCATTTAGAACCTAATCTTGATGAGGTTCAAAAA
TGTTACTATGTGACTCAGGATGAACTCGAAACGTTGTTACGCACTGCCGA
TGACGCTGGCATACTTTTAACACCTTGGTTTCGGTATATCTCAAATACAT
TCTTGTTTCAATGGTGGAACAACTTGGATGATTTGTCTTCTTTTAAAGAT
GATGTGATACACAGGGCTGGCCATCAACCTTGAATGTTACTGCAATCCTT
CTTTCCAAGGATGCATGCTAGATCACCAATCAAAAGGCTTATGTCAACCT
TTCTCAATCAAAACGTTAGCCAGCAACAAATCCAACAACTCAACGATCAA
ATCCCTCATGTCAATTCATCAGATGAAGTCATTGGCCCTGTCAGTAAAAA
AGACAGCCATGTGCGACCTCAAGGCGCCGAAGGGACTGGTCTTCTACATA
GAGCTTTCAGTGTGTTTTTATTCAACTCTGAGCGACAGTTATTACTGCAA
CAAAGGTCATCGTCCAAAATCACGTTTCCAGATTATCTAACAAACACTTG
CTGTAGTCACCCACGTTTTAACGATGACGAGCTCAATGAAAAATACAACG
TGGGCATCAAAATAGCGGCGCAACGGAGATTGAAATTCGAACTAGGAATT
ACTAAGGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007043XLOC_007043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012552-proteinTCONS_00012552-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012552-exon-sc0000145-1575043694:198025..198514TCONS_00012552-exon-sc0000145-1575043694:198025..198514Clytia hemisphaericaexon
TCONS_00012552-exon-sc0000145-1575043694:196134..197146TCONS_00012552-exon-sc0000145-1575043694:196134..197146Clytia hemisphaericaexon
TCONS_00012552-exon-sc0000145-1510915933:198025..198514TCONS_00012552-exon-sc0000145-1510915933:198025..198514Clytia hemisphaericaexon
TCONS_00012552-exon-sc0000145-1510915933:196134..197146TCONS_00012552-exon-sc0000145-1510915933:196134..197146Clytia hemisphaericaexon
TCONS_00012552-exon-sc0000145-1491911889:198025..198514TCONS_00012552-exon-sc0000145-1491911889:198025..198514Clytia hemisphaericaexon
TCONS_00012552-exon-sc0000145-1491911889:196134..197146TCONS_00012552-exon-sc0000145-1491911889:196134..197146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:196134..198514 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.40207	7.10201	4.06549	4.25877	4.31915	3.40348	5.75529	5.99249	5.4519	6.3698	4.99522	4.84178	3.93309	4.96665	5.15027	5.4694	6.93558	7.26847	2.44592	4.20381	3.12742	3.57679	6.45399	5.46968	6.76994	7.49876	3.12869	2.283	4.40313	3.98034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011876IsopentenylPP_isomerase_typ1
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0004452isopentenyl-diphosphate delta-isomerase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004452 isopentenyl-diphosphate delta-isomerase activity
Blast
[Close]
BLAST of TCONS_00012552 vs. Swiss-Prot (Human)
Match: IDI1 (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.102e-59
Identity = 103/199 (51.76%), Postives = 140/199 (70.35%), Query Frame = 2 
Query:  188 VNSSDEVIGPVSKKDSHVRPQGAEGTGLLHRAFSVFLFNSERQLLLQQRSSSKITFPDYLTNTCCSHPRFNDDELNEKYNVGIKIAAQRRLKFELGITKDQVPLESFTHLTRIHYSGNSDENWCEHEIDHVLICQKDVHLEPNLDEVQKCYYVTQDELETLLRTADDAGILLTPWFRYISNTFLFQWWNNLDDLSSFKD 784
            ++ +D  IG  +KK+ H+     +G  LLHRAFSVFLFN+E +LLLQQRS +KITFP   TNTCCSHP  N  EL E   +G++ AAQRRLK ELGI  ++VP E   +LTRIHY   SD  W EHEID++L+ +K+V L P+ +E++   YV+++EL+ LL+ A    I +TPWF+ I+ TFLF+WW+NL+ L+ F D
Sbjct:   24 IDENDNKIGAETKKNCHLNENIEKG--LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFKWWDNLNHLNQFVD 220
The following BLAST results are available for this feature:
BLAST of TCONS_00012552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDI11.102e-5951.76Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
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