TCONS_00012564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012564
Unique NameTCONS_00012564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012564 ID=TCONS_00012564|Name=TCONS_00012564|organism=Clytia hemisphaerica|type=transcript|length=1785bp
TTTGAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGAGACT
TAATATTACAATTCTTTCTCTGGAAATCAAAAAATTtgctaaaaatcctg
aattttccgacccttagagagactttgaaaggtgaaaaaaaccgaccctt
accgtccgcacatacccatcatccatttttgatCCCCCGGGGATCTGGCT
CTCTTGCCAACAGTATATCGGAAAAGAATTAGAGACAGATTTATTGGCCA
AGAAACTCCAAGCCCCATTTTCTTTGTGTGCAAAGTTGTAAAACCAAACT
AAAAGATCAGACAGataattaaaatttatttaaattttttactaAAAGGT
ATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTGTGCAATGTGATAT
GTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAattgagaaaaacat
ttttggcaCCAAGCATTGCAGGAGATTTTATTGGATGTTTGGGTGTGAGT
GAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCACAAATGCTGTCAA
AAAAGGAGACGATTACGTCATTAATGGCAGTAAAATGTGGACAACTAATG
GTTCTCAAGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGTGATAAT
CCACACATGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCCTGGTGT
ATCAACATCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAGATACCG
TTCAAACTTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGAATTGGA
GATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGATGAACG
ATTAGTGGCAGGTGTACAAGTTCTTTCCATCGTCGGTCGGTTGATCCAAG
AAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGACAACCGTTACTG
GACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAAACAGAACTCGA
AGCATTGCGATCATTAGTTTATAGAGCCGTCGGATTATATCTCAAAGGAC
ATGATGTCACAAAACTAGCAAGCATGGCTAAGTTAAAGGGAGGACGTCTG
GCACGTGAAACTGCAGATGCTTGTTTACAATACTGGGGTGGTATGGGATA
CATTGATGGATTGATGAGTCGAACATTCAGAGACGTTCGTTTGTTATCCA
TTGGTGGAGGAGCTGACGAGGTTATGTTGGGAATCATTTGTAAATATATG
GATACGCTGCCAAGGAAATAATACTTTGAATGGGTTGGATTGATTTTATG
GAATGTGGCAATTTGTAAGGGGAAGTACAGAAGATTTATTATGCTATACA
TTTTACTAAATGTGGACTGCAGACTTTGTTTGGAGAAAAACACACGATAA
TATTGGAAGCTTTTTAAACTATTGGTAATGTACGAAAGCATCCagcgagg
acctttttttaaacatctgtttcccaggcatagccatcctggaaaatttg
atctgttggccaaaggtttcaaaaatcttatacctagaaatgaagatctg
tttctcctcaaaacctaaaattttaatctcaaagtatcatCCCTAGAAAA
TTTGGTCTGGTTcctcaattttcagaataaaaatattgatctgttctccc
aagcttataaggaatattttttttcctcgcctggaaattttcatctgttt
tccttgctttttgtgattgGGATCTGTTTTCCCCCAGAAAGTtaaatctg
tttccaatgcaatatcaattttttggaaacagata
Run BLAST on NCBI

protein sequence of TCONS_00012564-protein

>TCONS_00012564-protein ID=TCONS_00012564-protein|Name=TCONS_00012564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MIDCGGIPMAIGVQCDMCTPALTNFGSDELRKTFLAPSIAGDFIGCLGVS
EVGAGSDVAAITTNAVKKGDDYVINGSKMWTTNGSQADWICLLANTGGDN
PHMNKSLIIVPMNSPGVSTSTPFKKLGMRSSDTVQTFFDNVVVPQKYRIG
DEGKGFFYQMNQFQDERLVAGVQVLSIVGRLIQETANYTYSRKAFGQPLL
DNQVIHFRLAELETELEALRSLVYRAVGLYLKGHDVTKLASMAKLKGGRL
ARETADACLQYWGGMGYIDGLMSRTFRDVRLLSIGGGADEVMLGIICKYM
DTLPRK
Run BLAST on NCBI

transcript from alignment at sc0000145:272425..277384-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012564 ID=TCONS_00012564|Name=TCONS_00012564|organism=Clytia hemisphaerica|type=transcript|length=4960bp|location=Sequence derived from alignment at sc0000145:272425..277384- (Clytia hemisphaerica)
TTTGAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTTAGAGAGACT
TAATATTACAATTCTTTCTCTGGAAATCAAAAAATTTGCTAAAAATCCTG
AATTTTCCGACCCTTAGAGAGACTTTGAAAGGTGAAAAAAACCGACCCTT
ACCGTCCGCACATACCCATCATCCATTTTTGATCCCCCGGGGATCTGGCT
CTCTTGCCAACAGTATATCGGAAAAGAATTAGAGACAGATTTATTGGCCA
AGAAACTCCAAGCCCCATTTTCTTTGTGTGCAAAGTTGTAAAACCAAACT
AAAAGATCAGACAGATAATTAAAATTTATTTAAATTTTTTACTAAAAGGT
ATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTGTGCAATGTGATAT
GTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAATTGAGAAAAACAT
TTTTGGCACCAAGCATTGCAGGAGATTTTATTGGATGTTTGGGTGTGAGT
GAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCACAAATGCTGTCAA
AAAAGGAGGTAATGTCAGTTTTTACTTATATTTTTTCTTTTTGGTGGTAC
TTCTGAAATTATTAGGAATTAGAATGCAATTTTTTGGTGAAAAGGTATGT
TTTGCAACTATATTCTGCAATTTTCTCACTAAAAATCACAATAAAAAGAA
ATTAAGATACTGTGCGAGACAAAATGATATATCTAAGCAGTAGAAAAATT
TTTTGGCGAAAAAATTCCTCAGCAGAACGTAAAAAAAACGAATTTTCTCT
ACCGTTAAGGTAATCCTCGCTGTGGTAATTCAAAGTAATTCAAATCTCTC
GACTATTTTATAAATTAATTAATTAACATTTAAATTTACTTCATTCTATA
TTTTCAGACGATTACGTCATTAATGGCAGTAAAATGTGGACAACTAATGG
TTCTCAAGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGTGATAATC
CACACATGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCCTGGTGTA
TCAACATCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAGATACCGT
TCAAACTTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGAATTGGAG
ATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGATGAACGA
TTAGTGGCAGGTGTACAAGGTAAGATTTCTTACCCTTACACTGTAGTTTT
CCCAGTGCTTCAGCACAGTCATTTAATCACTTTCAGCACATAAACCCAAA
ATTTAACGCCAAAGTTTTCAATTTTAAACGAAAAATGTTCCCAAAACAGC
CAAAAATTATTTGGTAAAAAATTAATCGTGGGTCGAAAATGATCTTCATC
CAAAAGACTTTTACCCCCTGGATATCCGCTCCCTTGTAGATATTTAACCT
CCTGGATATCCACTTTTGAACAAAAATCGTTAACCCCCTGGATATCCGAT
ATCCTCAACAGGGGGGACGGACTATATTTCTGGAAAAGCCCATTTTACGG
CTGATTTATTTACATTCTCTCCTTTCAGTTCTTTCCATCGTCGGTCGGTT
GATCCAAGAAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGACAAC
CGTTACTGGACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAAACA
GAACTCGAAGCATTGCGATCATTAGTTTATAGAGCCGTCGGTAAGAATCC
TTTATTCAGTATGAAAAGTTCTTGAAGTATTAATAGTCTGGCCGAAATAC
AATAAAACAGAGGTGAACGTAGAAAAAAATTCCGCGTAAACTTTCTTGGT
ACCGTTGGAAGCGGAATTTTATGTAGACTATCATACTCAGTGCCTCATGA
TGAANGGTACTAGGGTTGGCGAATTAGGGGTATGTGCGGACGGGACCTCC
GAAAACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTCAG
AGAGACTTTTTGAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCACC
CTTACAATTTTTTCACTGGAAATCAAAAAATTTGCTAAAAATGCTGAGTT
TTCCGACTCTTTAGAGAGACTTTGAAAGGTGAAAAAACCCTTACCGTCCG
CACAAACCCATCATCCATTTTTGCCTAAGTGCCCCCCCCCCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATATTTAACCTCCTGG
ATATCCACTTTTGAACAAAAATCGTTAACCCCCTGGATATCCGATATCCT
CAACAGGGGGGACGGACTATATTTCTGGAAAAGCCCATTTTACGGCTGAT
TTATTTACATTCTCTCCTTTCAGTTCTTTCCATCGTCGGTCGGTTGATCC
AAGAAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGACAACCGTTA
CTGGACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAAACAGAACT
CGAAGCATTGCGATCATTAGTTTATAGAGCCGTCGGTAAGAATCCTTTAT
TCAGTATGAAAAGTTCTTGAAGTATTAATAGTCTGGCCGAAATACAATAA
AACAGAGGTGAACGTAGAAAAAAATTCCGCGTAAACTTTCTTGGTACCGT
TGGAAGCGGAATTTTATGTAGACTATCATACTCAGTGCCTCATGATGAAG
CCCTTGGGGAAAACTTTTGGTAAAATCAAGTCTGAAGTGTACTTCTTTGC
CCCAAAATAGATACGTTTTTGAGCAGTGTACTGGTCATCAGCTACACTTA
AAACCTATCAAAGCTATTAAAAGTTTTTGAAAGTCAGCGCTATCCCCATT
GCTTTCGCCTTGCACTTGACCCATTTCATAATATGGATGACACTGTTTAA
TTGTTTGTGGTTACCAGAAATGTTTGTTGGGAAATCCCCCCCTCAGATTT
TTGAGACAGGGGTATACATTGAGTGTTTTAAAAGGCACCTACTAAATTGC
AAGGATAGCATTTTTCAAGGCATTTTATATCGAAAATGGGTCCTTAGTGT
TTAATTTCACCAATTTTTTCCCCAATGGCCTCAACGCGAGGCTCTGAGTA
TGTTAAACCTCTTAAAATTCCGCTTCCAACGATACCAAGAAAGTTTACGT
GGGGAATTTTTTTCAAGGTCAACTTTTATTTCTGCTAGACTATAAATAAA
TAAGATTTTCCGTCTCAAAGTTCTGCATAATTCACTAAAATTTCAAAAAT
GTGTGTTAATTTACCGTCGCAGACGAAAAACCTCGCTTTGACCTCCGAAT
GTTTATTTTCATTTTTTTCCTTTTTTTCGTGATTGACCTCTATATATTCG
GAGACATTAACCACTTTACAGTTAGAAAATGGATATTTTTATCTTAGAGT
TTTTAGACGTGTGTTGTTATGGACAAGACTCTACCATACAATCTTTTACC
GTTTCAGGATTATATCTCAAAGGACATGATGTCACAAAACTAGCAAGCAT
GGCTAAGTTAAAGGGAGGACGTCTGGCACGTGAAACTGCAGATGCTTGTT
TACAATACTGGGGTGGTATGGGATACATTGATGGATTGATGAGTCGAACA
TTCAGAGACGTTCGTTTGTTATCCATTGGTGGAGGAGCTGACGAGGTTAT
GTTGGGAATCATTTGTAAATATATGGATACGCTGCCAAGGAAATAATACT
TTGAATGGGTTGGATTGATTTTATGGAATGTGGCAATTTGTAAGGGGAAG
TACAGAAGATTTATTATGCTATACATTTTACTAAATGTGGACTGCAGACT
TTGTTTGGAGAAAAACACACGATAATATTGGAAGCTTTTTAAACTATTGG
TAATGTACGAAAGCATCCAGCGAGGACCTTTTTTTAAACATCTGTTTCCC
AGGCATAGCCATCCTGGAAAATTTGATCTGTTGGCCAAAGGTTTCAAAAA
TCTTATACCTAGAAATGAAGATCTGTTTCTCCTCAAAACCTAAAATTTTA
ATCTCAAAGTATCATCCCTAGAAAATTTGGTCTGGTTCCTCAATTTTCAG
AATAAAAATATTGATCTGTTCTCCCAAGCTTATAAGGAATATTTTTTTTC
CTCGCCTGGAAATTTTCATCTGTTTTCCTTGCTTTTTGTGATTGGGATCT
GTTTTCCCCCAGAAAGTTAAATCTGTTTCCAATGCAATATCAATTTTTTG
GAAACAGATA

Coding sequence (CDS) from alignment at sc0000145:272425..277384-

>TCONS_00012564 ID=TCONS_00012564|Name=TCONS_00012564|organism=Clytia hemisphaerica|type=CDS|length=3684bp|location=Sequence derived from alignment at sc0000145:272425..277384- (Clytia hemisphaerica)
GATTATATCTCAAAGGACATGATGTCACAAAACTAGCAAGCATGGCTAAG
TTAAAGGGAGGACGTCTGGCACGTGAAACTGCAGATGCTTGTTTACAATA
CTGGGGTGGTATGGGATACATTGATGGATTGATGAGTCGAACATTCAGAG
ACGTTCGTTTGTTATCCATTGGTGGAGGAGCTGACGAGGTTATGTTGGGA
ATCATTTGTAAATATATGGATACGCTGCCAAGGAAATAATTCTTTCCATC
GTCGGTCGGTTGATCCAAGAAACAGCCAATTACACGTATAGTCGAAAAGC
GTTTGGACAACCGTTACTGGACAATCAAGTAATTCACTTTCGATTGGCCG
AGTTGGAAACAGAACTCGAAGCATTGCGATCATTAGTTTATAGAGCCGTC
GACGATTACGTCATTAATGGCAGTAAAATGTGGACAACTAATGGTTCTCA
AGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGTGATAATCCACACA
TGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCCTGGTGTATCAACA
TCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAGATACCGTTCAAAC
TTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGAATTGGAGATGAAG
GCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGATGAACGATTAGTG
GCAGGTGTACAAGATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTG
TGCAATGTGATATGTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAA
TTGAGAAAAACATTTTTGGCACCAAGCATTGCAGGAGATTTTATTGGATG
TTTGGGTGTGAGTGAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCA
CAAATGCTGTCAAAAAAGGAGGATTATATCTCAAAGGACATGATGTCACA
AAACTAGCAAGCATGGCTAAGTTAAAGGGAGGACGTCTGGCACGTGAAAC
TGCAGATGCTTGTTTACAATACTGGGGTGGTATGGGATACATTGATGGAT
TGATGAGTCGAACATTCAGAGACGTTCGTTTGTTATCCATTGGTGGAGGA
GCTGACGAGGTTATGTTGGGAATCATTTGTAAATATATGGATACGCTGCC
AAGGAAATAATTCTTTCCATCGTCGGTCGGTTGATCCAAGAAACAGCCAA
TTACACGTATAGTCGAAAAGCGTTTGGACAACCGTTACTGGACAATCAAG
TAATTCACTTTCGATTGGCCGAGTTGGAAACAGAACTCGAAGCATTGCGA
TCATTAGTTTATAGAGCCGTCGACGATTACGTCATTAATGGCAGTAAAAT
GTGGACAACTAATGGTTCTCAAGCGGATTGGATTTGTTTACTTGCCAACA
CTGGTGGTGATAATCCACACATGAATAAAAGCTTGATCATCGTCCCTATG
AATAGTCCTGGTGTATCAACATCAACTCCTTTCAAGAAACTTGGAATGAG
GTCTTCAGATACCGTTCAAACTTTCTTTGATAATGTTGTTGTGCCACAGA
AATACAGAATTGGAGATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAG
TTCCAAGATGAACGATTAGTGGCAGGTGTACAAGATGATTGATTGTGGTG
GAATCCCCATGGCAATTGGTGTGCAATGTGATATGTGTACTCCAGCTCTA
ACAAATTTTGGGAGTGATGAATTGAGAAAAACATTTTTGGCACCAAGCAT
TGCAGGAGATTTTATTGGATGTTTGGGTGTGAGTGAGGTTGGTGCTGGTT
CTGATGTTGCAGCTATTACCACAAATGCTGTCAAAAAAGGAGGATTATAT
CTCAAAGGACATGATGTCACAAAACTAGCAAGCATGGCTAAGTTAAAGGG
AGGACGTCTGGCACGTGAAACTGCAGATGCTTGTTTACAATACTGGGGTG
GTATGGGATACATTGATGGATTGATGAGTCGAACATTCAGAGACGTTCGT
TTGTTATCCATTGGTGGAGGAGCTGACGAGGTTATGTTGGGAATCATTTG
TAAATATATGGATACGCTGCCAAGGAAATAATTCTTTCCATCGTCGGTCG
GTTGATCCAAGAAACAGCCAATTACACGTATAGTCGAAAAGCGTTTGGAC
AACCGTTACTGGACAATCAAGTAATTCACTTTCGATTGGCCGAGTTGGAA
ACAGAACTCGAAGCATTGCGATCATTAGTTTATAGAGCCGTCGACGATTA
CGTCATTAATGGCAGTAAAATGTGGACAACTAATGGTTCTCAAGCGGATT
GGATTTGTTTACTTGCCAACACTGGTGGTGATAATCCACACATGAATAAA
AGCTTGATCATCGTCCCTATGAATAGTCCTGGTGTATCAACATCAACTCC
TTTCAAGAAACTTGGAATGAGGTCTTCAGATACCGTTCAAACTTTCTTTG
ATAATGTTGTTGTGCCACAGAAATACAGAATTGGAGATGAAGGCAAAGGT
TTTTTTTACCAGATGAACCAGTTCCAAGATGAACGATTAGTGGCAGGTGT
ACAAGATGATTGATTGTGGTGGAATCCCCATGGCAATTGGTGTGCAATGT
GATATGTGTACTCCAGCTCTAACAAATTTTGGGAGTGATGAATTGAGAAA
AACATTTTTGGCACCAAGCATTGCAGGAGATTTTATTGGATGTTTGGGTG
TGAGTGAGGTTGGTGCTGGTTCTGATGTTGCAGCTATTACCACAAATGCT
GTCAAAAAAGGAGGATTATATCTCAAAGGACATGATGTCACAAAACTAGC
AAGCATGGCTAAGTTAAAGGGAGGACGTCTGGCACGTGAAACTGCAGATG
CTTGTTTACAATACTGGGGTGGTATGGGATACATTGATGGATTGATGAGT
CGAACATTCAGAGACGTTCGTTTGTTATCCATTGGTGGAGGAGCTGACGA
GGTTATGTTGGGAATCATTTGTAAATATATGGATACGCTGCCAAGGAAAT
AATTCTTTCCATCGTCGGTCGGTTGATCCAAGAAACAGCCAATTACACGT
ATAGTCGAAAAGCGTTTGGACAACCGTTACTGGACAATCAAGTAATTCAC
TTTCGATTGGCCGAGTTGGAAACAGAACTCGAAGCATTGCGATCATTAGT
TTATAGAGCCGTCGACGATTACGTCATTAATGGCAGTAAAATGTGGACAA
CTAATGGTTCTCAAGCGGATTGGATTTGTTTACTTGCCAACACTGGTGGT
GATAATCCACACATGAATAAAAGCTTGATCATCGTCCCTATGAATAGTCC
TGGTGTATCAACATCAACTCCTTTCAAGAAACTTGGAATGAGGTCTTCAG
ATACCGTTCAAACTTTCTTTGATAATGTTGTTGTGCCACAGAAATACAGA
ATTGGAGATGAAGGCAAAGGTTTTTTTTACCAGATGAACCAGTTCCAAGA
TGAACGATTAGTGGCAGGTGTACAAGATGATTGATTGTGGTGGAATCCCC
ATGGCAATTGGTGTGCAATGTGATATGTGTACTCCAGCTCTAACAAATTT
TGGGAGTGATGAATTGAGAAAAACATTTTTGGCACCAAGCATTGCAGGAG
ATTTTATTGGATGTTTGGGTGTGAGTGAGGTTGGTGCTGGTTCTGATGTT
GCAGCTATTACCACAAATGCTGTCAAAAAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007046XLOC_007046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012564-exon-sc0000145-1575043694:276827..277384TCONS_00012564-exon-sc0000145-1575043694:276827..277384Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1575043694:276166..276477TCONS_00012564-exon-sc0000145-1575043694:276166..276477Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1575043694:274100..274261TCONS_00012564-exon-sc0000145-1575043694:274100..274261Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1575043694:272425..273177TCONS_00012564-exon-sc0000145-1575043694:272425..273177Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1510915933:276827..277384TCONS_00012564-exon-sc0000145-1510915933:276827..277384Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1510915933:276166..276477TCONS_00012564-exon-sc0000145-1510915933:276166..276477Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1510915933:274100..274261TCONS_00012564-exon-sc0000145-1510915933:274100..274261Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1510915933:272425..273177TCONS_00012564-exon-sc0000145-1510915933:272425..273177Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1491911889:276827..277384TCONS_00012564-exon-sc0000145-1491911889:276827..277384Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1491911889:276166..276477TCONS_00012564-exon-sc0000145-1491911889:276166..276477Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1491911889:274100..274261TCONS_00012564-exon-sc0000145-1491911889:274100..274261Clytia hemisphaericaexon
TCONS_00012564-exon-sc0000145-1491911889:272425..273177TCONS_00012564-exon-sc0000145-1491911889:272425..273177Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012564-proteinTCONS_00012564-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:272425..277384 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.867	31.33	35.8995	32.0503	14.4942	11.8335	30.7507	34.7364	61.0678	64.4806	73.4487	53.8721	43.92	44.7058	38.2747	53.472	45.9079	45.0222	22.5632	33.2043	26.627	28.1103	23.4649	24.2298	33.7983	34.9873	52.0989	54.1803	40.9485	32.102
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013786AcylCoA_DH/ox_N
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR009075AcylCo_DH/oxidase_C
IPR006089Acyl-CoA_DH_CS
IPR009100AcylCoA_DH/oxidase_NM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003995acyl-CoA dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003995 acyl-CoA dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Blast
[Close]
BLAST of TCONS_00012564 vs. Swiss-Prot (Human)
Match: ACADS (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.575e-43
Identity = 101/300 (33.67%), Postives = 149/300 (49.67%), Query Frame = 3 
Query:  360 CGGIPMAIGVQCDMCTPALTNFGSDELRKTFLAPSIAGDFIGCLGVSEVGAGSDVAAITTNAVKKGDDYVINGSKMWTTNGSQADWICLLANTGGDNPHMNK--SLIIVPMNSPGVSTSTPFKKLGMRSSDTVQTFFDNVVVPQKYRIGDEGKGFFYQMNQFQDERLVAGVQVLSIVGRLIQETANYTYSRKAFGQPLLDNQVIHFRXXXXXXXXXXXRSLVYRAVGLYLKGHDVTKLASMAKLKGGRLARETADACLQYWGGMGYIDGL-MSRTFRDVRLLSIGGGADEVMLGIICKYM 1250
            C    + + V   +    +  FGS E ++ ++ P  +GD IGC  +SE G GSD  A +T A  +GD +V+NG+K W TN  +A    + A+T  D    NK  S  +VPM +PG++      KLG+R S T    F++  +P+   +G+ G GF   M      R+    Q L I    +    NY  +R AFG PL   QVI F+LA++   LE+ R L +RA  L        K A+MAKL     A   +   +Q  GGMGY+  +   R +RD R+  I  G  E+   +I  ++
Sbjct:  109 CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFAST--DRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHL 406
The following BLAST results are available for this feature:
BLAST of TCONS_00012564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACADS5.575e-4333.67Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
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