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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012567 ID=TCONS_00012567|Name=TCONS_00012567|organism=Clytia hemisphaerica|type=transcript|length=1081bp
aacaaagatGGCGCTAGCagtggaagaaaattttgaaccaAAACAATTCC
AACTTGGAACACTTATTACCATCAAGGTTACTGCTGATGATTACGGTTAT
TGTCCCCAACGAAACGAAGGAATCTTAGAAGCTTTGAATAATGGAATTGT
TAACAGTGTTTCCGTTTTAGTTAATGCAGCATTCGTTGATCCCATTCCTT
TGAAATGTTGTTTGAAGACAGCAgtcaaaaaactaaaacttgGACTTCAT
CTGAATTTAACAGAGGGGAGACCGGTCACAGCTTTAGACTCTGTGAAGAC
ACTGCTAGATCATGACAATGAATTCTTTCCAAAGGCATTATTTCAAGAAC
ATTTAAAGTTATTCAGTAAAACTCAGATATaccaagaaatcaaaaatcaa
attgtgTTATTTAATGAGATATTTGGCAAAAATCCAGATTACATCGATGG
GCATCAGCATTGTCACATATTTCCTATAATAACAGAAGAATTGGTTAAAT
GTATGGACGAATTTGACATCCAAGAGACAAGGATTCCCCATGAGATTGTC
GATTTGGTCGATTTGAAACGAAATGGCTGTATCACAGAAAATCAAGAATA
CTTCTTTCAAACTgtgctggaaaattgtatcactGCAAAATCTATATTTG
ATAAACGAGAAATAAGatatCCGCATTATTTCATCGGACTTTCAACAATG
TCAAAAAGTATGACTGAATCTTCCATGCGTCAAGCAATAAACATTATCAA
GGACAATTTAAGGAAGAATCAACCTTTCGAATGGACCAATAAAGGTGACA
TGTTTGTGGAGTTGATGGCTCACCCTGGCTTCCCCTGTGTAACCAAAGAT
GCTGGTTGCAGTGTTAAAGGTCCAGATGATTTTGCAAAATCTCATGATAG
ACTCTATGAgttaaattttctgaaatctCAAACAGCTTTCAAACTTCTTT
ATTAAATATCTGATGTAATAAATGATGTTCTATCACAATAGAATTGCATT
TTAATCAAACAGAGGACTCCGGTTATTTGGAGTTCAATGGATCATATTAA
TTTACGAATAACTGAATAATCTTTTAACGCA Run BLAST on NCBI protein sequence of TCONS_00012567-protein >TCONS_00012567-protein ID=TCONS_00012567-protein|Name=TCONS_00012567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
TKMALAVEENFEPKQFQLGTLITIKVTADDYGYCPQRNEGILEALNNGIV
NSVSVLVNAAFVDPIPLKCCLKTAVKKLKLGLHLNLTEGRPVTALDSVKT
LLDHDNEFFPKALFQEHLKLFSKTQIYQEIKNQIVLFNEIFGKNPDYIDG
HQHCHIFPIITEELVKCMDEFDIQETRIPHEIVDLVDLKRNGCITENQEY
FFQTVLENCITAKSIFDKREIRYPHYFIGLSTMSKSMTESSMRQAINIIK
DNLRKNQPFEWTNKGDMFVELMAHPGFPCVTKDAGCSVKGPDDFAKSHDR
LYELNFLKSQTAFKLLY Run BLAST on NCBI transcript from alignment at sc0000145:309906..313093- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012567 ID=TCONS_00012567|Name=TCONS_00012567|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at sc0000145:309906..313093- (Clytia hemisphaerica)
AACAAAGATGGCGCTAGCAGTGGAAGAAAATTTTGAACCAAAACAATTCC
AACTTGGAACACTTATTACCATCAAGGTTACTGCTGATGATTACGGTTAT
TGTCCCCAACGAAACGAAGGAATCTTAGAAGCTTTGAATAATGGAATTGT
TAACAGTGTTTCCGTTTTAGTTAATGCAGCATTCGTTGATCCCATTCCTT
TGAAATGTTGTTTGAAGACAGCAGTCAAAAAACTAAAACTTGGACTTCAT
CTGAATTTAACAGAGGGGAGACCGGTCACAGCTTTAGACTCTGTGAAGAC
ACTGCTAGATCATGACAATGAATTCTTTCCAAAGGCATTATTTCAAGAAC
ATTTAAAGTTATTCAGTAAAACTCAGGTAAGTAAGACGACAGTCCATATT
ATTTTGTGAGCTGACAATTTATACTATTTTAAGAGCAAGTACTTTCATTC
AACAGTGCTAAAGTGATTTTGACAGTGCTATTGTATTTCCTAATCATATA
CTTCTTGTTCTACACAATGTGGTTTATTCTTTAATTATATACCGTGAAGT
CAGATAACTTGCATATCAGTGGGGAGGCAAACATGCATAGCCCTCAAATG
AATAACCTGCCTGGTCATTAATACAAACTTAAATCAAATCAAAAATGGTA
GAGTAGAGCTGCAATCTGAGTTGCGTAGTACATTTGTTTTGTGAAATGTT
ACTGCTTTGATTGGTCTGTCATTTGATGGCTATGCATGGTTGCCTCCACT
GATGCAAGTTACCCGACTTCACGGTAATCTATAGTGTACCATCTACAGCT
ATTTACATTTTTTCTTTTTCAAGTAAAGCACAGCTTTTAGCTTTGGGACA
AGATTTTTATGTCAATGGTAGCTAAAAATATTTGGGTTCCTCGACTAACT
ATCTATTTTTCAGAATGATTCATTTTTATCAATTTTCAATTCCTAGAATT
CCTGCCTGATGCAATTTGTGATTCTGCTCGTGGAGCCCGGTTGGCAGACG
ATATCATCCACCAGGATGCAAGTGAAATTTTCCAATCTGCAGACCTAAAG
GGGGTTTGGTTATTATCAGTTAGGCCTTCTTAGGGGCATTCCTACTCTGA
GACTTAACTTAAGGGCACCAGTCTAGGTCCGCAGATTGAAAAATTTCACT
TTTATAAGTGCGCTTAAACTATATCATGAAATCATGAATTACCAATTATA
AAGCCAGTGTCCAAGGCGTAGTGGCAAAGTGGTTATTATCCTTGACTTCC
GCCTGAGAGGTCTGAGTTCGATACTCACCGTGTCACTGTGATTCACTTGG
CAAATGAATATACTTTTGCCCGTCTCAATCCATGTCATGTGAGGAAAAAA
TTGGGTATCAATACCCTGATATAAAAGTGTGGGTAGATGAAACAGGCATC
GTGACGTGCCATGGTACTTACGAGGCTCGACTTCGCGTGAGCATCGCTCC
CCCAGTGTTGTTCAAGTGTCATGGTATACTCCAAGGCTTGGCATCCTTAT
TAGATTAGGATCCACTCCAAATGTTCATACTGTAAACTTCTTTTTTTTCA
TTTTCAATATAAAAACCATCCTTCCTGTCCGACCTTTTGGGTATCTGTGT
GGTTTAGGTTTTAATTATCACTAAGCATTCAGAAGTCATTAAACTGGACA
CAACATAAAGAGAAATGTATAATCAAAAATCAAATTGTGTTATTTAATGA
GATATTTGGCAAAAATCCAGATTACATCGATGGGCATCAGCATTGTCACA
TATTTCCTATAATAACAGAAGAATTGGTTAAATGTATGGACGAATTTGAC
ATCCAAGAGACAAGGATTCCCCATGAGATTGTCGATNGTGAAGAAAAATA
ATAGGAAGCACATTAGAACTGTTGTACTTTTAAGTCAAAAAAGCAAAACT
CTGAAGAATCTCGGAAAGAATGTAAGATCGAAATCTGCATATCAAATAAT
CTTTTATTTTTGTAATTAGTTTACTCTCTGTTACCAAAGGTTTATTTTTT
ATTTTTTATATCCCATGCATGGAATTATTTGCGTTTTTCCTCTTTCAATA
TTTCATATTCTTTAGATATACCAAGAAATCAAAAATCAAATTGTGTTATT
TAATGAGATATTTGGCAAAAATCCAGATTACATCGATGGGCATCAGCATT
GTCACATATTTCCTATAATAACAGAAGAATTGGTTAAATGTATGGACGAA
TTTGACATCCAAGAGACAAGGATTCCCCATGAGATTGTCGATTTGGTCGA
TTTGAAACGAAATGGCTGTATCACAGAAAATCAAGAATACTTCTTTCAAA
CTGTGCTGGAAAATTGTATCACTGCAAAATCTATATTTGATAAACGAGAA
ATAAGGTATGTCAATTTTCAGGTTTCAAAATGTTCGAATTTATTTTTACA
GTCAAAAAACATTAAACTAGAAACCGAAGTGGTTTGAAGGCCAAGTGACA
GTCAAGTAATATAGTCAAGGCGCCATTACATCCAAAATGAATTGACAAAG
CGCTGTTTATTCGAAACGGACATACAGCACTACGGACAGCGACATTCTAA
AAAAAGGGATACATACTGGACAAATAAATTCAAATAGCTTTGGGTTCTCG
GATATGTATGAAAAAGGCATGTTCAATTAGTTTCGACAAATCTTTATTGA
CAAAACAGAAATCGACTAACCTTACTCTGATCTTGAATCCTCAATAATTC
TATCAAATGATTGAAAACTCGGATAAGTATTTTCGCATATCTGATTAGAA
AATCGTTAACTCTTTTTTTTCAGATATCCGCATTATTTCATCGGACTTTC
AACAATGTCAAAAAGTATGACTGAATCTTCCATGCGTCAAGCAATAAACA
TTATCAAGGACAATTTAAGGAAGAATCAACCTTTCGAATGGACCAATAAA
GGTGACATGTTTGTGGAGTTGATGGCTCACCCTGGCTTCCCCTGTGTAAC
CAAAGATGCTGGTTGCAGTGTTAAAGGTCCAGATGATTTTGCAAAATCTC
ATGATAGACTCTATGAGTTAAATTTTCTGAAATCTCAAACAGCTTTCAAA
CTTCTTTATTAAATATCTGATGTAATAAATGATGTTCTATCACAATAGAA
TTGCATTTTAATCAAACAGAGGACTCCGGTTATTTGGAGTTCAATGGATC
ATATTAATTTACGAATAACTGAATAATCTTTTAACGCA Coding sequence (CDS) from alignment at sc0000145:309906..313093- >TCONS_00012567 ID=TCONS_00012567|Name=TCONS_00012567|organism=Clytia hemisphaerica|type=CDS|length=2862bp|location=Sequence derived from alignment at sc0000145:309906..313093- (Clytia hemisphaerica)
ATATCCGCATTATTTCATCGGACTTTCAACAATGTCAAAAAGTATGACTG
AATCTTCCATGCGTCAAGCAATAAACATTATCAAGGACAATTTAAGGAAG
AATCAACCTTTCGAATGGACCAATAAAGGTGACATGTTTGTGGAGTTGAT
GGCTCACCCTGGCTTCCCCTGTGTAACCAAAGATGCTGGTTGCAGTGTTA
AAGGTCCAGATGATTTTGCAAAATCTCATGATAGACTCTATGAGTTAAAT
TTTCTGAAATCTCAAACAGCTTTCAAACTTCTTTATTAAATATACCAAGA
AATCAAAAATCAAATTGTGTTATTTAATGAGATATTTGGCAAAAATCCAG
ATTACATCGATGGGCATCAGCATTGTCACATATTTCCTATAATAACAGAA
GAATTGGTTAAATGTATGGACGAATTTGACATCCAAGAGACAAGGATTCC
CCATGAGATTGTCGATTTGGTCGATTTGAAACGAAATGGCTGTATCACAG
AAAATCAAGAATACTTCTTTCAAACTGTGCTGGAAAATTGTATCACTGCA
AAATCTATATTTGATAAACGAGAAATAAGACAAAGATGGCGCTAGCAGTG
GAAGAAAATTTTGAACCAAAACAATTCCAACTTGGAACACTTATTACCAT
CAAGGTTACTGCTGATGATTACGGTTATTGTCCCCAACGAAACGAAGGAA
TCTTAGAAGCTTTGAATAATGGAATTGTTAACAGTGTTTCCGTTTTAGTT
AATGCAGCATTCGTTGATCCCATTCCTTTGAAATGTTGTTTGAAGACAGC
AGTCAAAAAACTAAAACTTGGACTTCATCTGAATTTAACAGAGGGGAGAC
CGGTCACAGCTTTAGACTCTGTGAAGACACTGCTAGATCATGACAATGAA
TTCTTTCCAAAGGCATTATTTCAAGAACATTTAAAGTTATTCAGTAAAAC
TCAGATATCCGCATTATTTCATCGGACTTTCAACAATGTCAAAAAGTATG
ACTGAATCTTCCATGCGTCAAGCAATAAACATTATCAAGGACAATTTAAG
GAAGAATCAACCTTTCGAATGGACCAATAAAGGTGACATGTTTGTGGAGT
TGATGGCTCACCCTGGCTTCCCCTGTGTAACCAAAGATGCTGGTTGCAGT
GTTAAAGGTCCAGATGATTTTGCAAAATCTCATGATAGACTCTATGAGTT
AAATTTTCTGAAATCTCAAACAGCTTTCAAACTTCTTTATTAAATATACC
AAGAAATCAAAAATCAAATTGTGTTATTTAATGAGATATTTGGCAAAAAT
CCAGATTACATCGATGGGCATCAGCATTGTCACATATTTCCTATAATAAC
AGAAGAATTGGTTAAATGTATGGACGAATTTGACATCCAAGAGACAAGGA
TTCCCCATGAGATTGTCGATTTGGTCGATTTGAAACGAAATGGCTGTATC
ACAGAAAATCAAGAATACTTCTTTCAAACTGTGCTGGAAAATTGTATCAC
TGCAAAATCTATATTTGATAAACGAGAAATAAGACAAAGATGGCGCTAGC
AGTGGAAGAAAATTTTGAACCAAAACAATTCCAACTTGGAACACTTATTA
CCATCAAGGTTACTGCTGATGATTACGGTTATTGTCCCCAACGAAACGAA
GGAATCTTAGAAGCTTTGAATAATGGAATTGTTAACAGTGTTTCCGTTTT
AGTTAATGCAGCATTCGTTGATCCCATTCCTTTGAAATGTTGTTTGAAGA
CAGCAGTCAAAAAACTAAAACTTGGACTTCATCTGAATTTAACAGAGGGG
AGACCGGTCACAGCTTTAGACTCTGTGAAGACACTGCTAGATCATGACAA
TGAATTCTTTCCAAAGGCATTATTTCAAGAACATTTAAAGTTATTCAGTA
AAACTCAGATATCCGCATTATTTCATCGGACTTTCAACAATGTCAAAAAG
TATGACTGAATCTTCCATGCGTCAAGCAATAAACATTATCAAGGACAATT
TAAGGAAGAATCAACCTTTCGAATGGACCAATAAAGGTGACATGTTTGTG
GAGTTGATGGCTCACCCTGGCTTCCCCTGTGTAACCAAAGATGCTGGTTG
CAGTGTTAAAGGTCCAGATGATTTTGCAAAATCTCATGATAGACTCTATG
AGTTAAATTTTCTGAAATCTCAAACAGCTTTCAAACTTCTTTATTAAATA
TACCAAGAAATCAAAAATCAAATTGTGTTATTTAATGAGATATTTGGCAA
AAATCCAGATTACATCGATGGGCATCAGCATTGTCACATATTTCCTATAA
TAACAGAAGAATTGGTTAAATGTATGGACGAATTTGACATCCAAGAGACA
AGGATTCCCCATGAGATTGTCGATTTGGTCGATTTGAAACGAAATGGCTG
TATCACAGAAAATCAAGAATACTTCTTTCAAACTGTGCTGGAAAATTGTA
TCACTGCAAAATCTATATTTGATAAACGAGAAATAAGACAAAGATGGCGC
TAGCAGTGGAAGAAAATTTTGAACCAAAACAATTCCAACTTGGAACACTT
ATTACCATCAAGGTTACTGCTGATGATTACGGTTATTGTCCCCAACGAAA
CGAAGGAATCTTAGAAGCTTTGAATAATGGAATTGTTAACAGTGTTTCCG
TTTTAGTTAATGCAGCATTCGTTGATCCCATTCCTTTGAAATGTTGTTTG
AAGACAGCAGTCAAAAAACTAAAACTTGGACTTCATCTGAATTTAACAGA
GGGGAGACCGGTCACAGCTTTAGACTCTGTGAAGACACTGCTAGATCATG
ACAATGAATTCTTTCCAAAGGCATTATTTCAAGAACATTTAAAGTTATTC
AGTAAAACTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012567-exon-sc0000145-1575043694:312718..313093 | TCONS_00012567-exon-sc0000145-1575043694:312718..313093 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1575043694:310739..311028 | TCONS_00012567-exon-sc0000145-1575043694:310739..311028 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1575043694:309906..310320 | TCONS_00012567-exon-sc0000145-1575043694:309906..310320 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1510915933:312718..313093 | TCONS_00012567-exon-sc0000145-1510915933:312718..313093 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1510915933:310739..311028 | TCONS_00012567-exon-sc0000145-1510915933:310739..311028 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1510915933:309906..310320 | TCONS_00012567-exon-sc0000145-1510915933:309906..310320 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1491911889:312718..313093 | TCONS_00012567-exon-sc0000145-1491911889:312718..313093 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1491911889:310739..311028 | TCONS_00012567-exon-sc0000145-1491911889:310739..311028 | Clytia hemisphaerica | exon |
| TCONS_00012567-exon-sc0000145-1491911889:309906..310320 | TCONS_00012567-exon-sc0000145-1491911889:309906..310320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:309906..313093 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006879 | YdjC-like |
| IPR011330 | Glyco_hydro/deAcase_b/a-brl |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00012567 vs. Swiss-Prot (Human)
Match: YDJC (Carbohydrate deacetylase OS=Homo sapiens GN=YDJC PE=1 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.576e-43 Identity = 97/296 (32.77%), Postives = 148/296 (50.00%), Query Frame = 2
Query: 65 ITIKVTADDYGYCPQRNEGILEALNNGIVNSVSVLVNAAFVDPIPLKCCLKTAVKKLKLGLHLNLTEGRPVT-ALDSVKTLLDHDNEFFPKALFQEHLKL--FSKTQIYQEIKNQIVLFNEIFGKNPDYIDGHQHCHIFPIITEELVKCMDEFDIQETRIPHEIVDLVDLKRNGC--ITENQEYFFQTVLENCITAKSIFDKREIRYPHYFIGLXXXXXXXXXXXXRQAINIIKDNLRKNQPFEWTNKG-DMFVELMAHPGFPCVTKDAGCSVKGPDDFAKSHDRLYELNFLKSQT 934
+ + VTADD+GYCP+R+EGI+EA G V SVS+LVN A + + GLH NL+EGRPV A +LL + F K F+E + Q+ +E++ Q+ F E+ G+ P + DGHQH H+ P + + + + + ++ TR+P ++ GC + F V + A F + +R+ F+GLST + M+ + A+ + E T G + ELMAHPG+P V GC +GPD F+ S +RL+EL L + T
Sbjct: 6 MRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATE----SAAELARRHSIPTGLHANLSEGRPVGPARRGASSLLGPEGFFLGKMGFREAVAAGDVDLPQVREELEAQLSCFRELLGRAPTHADGHQHVHVLPGVCQVFAEALQAYGVRFTRLP------LERGVGGCTWLEAPARAFACAVERDARAAVGPFSRHGLRWTDAFVGLSTCGRHMSAHRVSGALARV---------LEGTLAGHTLTAELMAHPGYPSVPPTGGCG-EGPDAFSCSWERLHELRVLTAPT 281
The following BLAST results are available for this feature:
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