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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012570 ID=TCONS_00012570|Name=TCONS_00012570|organism=Clytia hemisphaerica|type=transcript|length=1874bp
TGATGATGTTACGACTGAAATTAAATACTCTTACAGTGTATCTTATTCAA
CAATCTTTACAAACCTTTTAAGTCTCATTGTGTTGAAAAGAACAAATCAT
AGAATTATGaagatatgattttttttggtttcatATCAAAATATATTAAG
AGTTTTGACCACTCAATTGGTCATTTTGGAGACTTGTGTAGACGGAAAac
tcattgaaaattttttttaaagGTTCCGTCAGAAGAAGCCAATCGCAAAA
TGGGAATGTCTGAGAATTGGGATCGTTTTATCGCcattacaaaatcaaaa
ggCAAGAGCCATATGCAAGCTGCACAATATTGGGACAGAATGCATACATT
TATCAGTCTATCAATGATCATTCTAGGTGCAACAACAACCTTTTTATCCT
TAATCAGTTCAATACCGGGTTTTGTCATCTCCGCGTTAGCAGCCCTAGCA
ACTCTTATTTCCGCCATATCAGCATTTATGAGACCTCACGATCGACGTCA
ACTACAAGTGGACTCGGCAAAAGAGTTCAAAGTCTTAATGATGAAGATGG
TTCGATGCGAGAAAGAACGAGAATACGAAGATTTGTGGAGAGAATTGAAC
AAAGCAATGATGGACGAGCCTTTTCTTCCAAAGAAGTATGTCAAAGATAA
TCCAGAAATGGATTGGACAAAAACACCGGAATTACAAATTGTTATTGCTG
AAAAAGAACAAGAACTTGAGGAGGTTTTAGGTTCAGATCATGGAGATGAT
GACGTCACAGTGAACATGAATGGAAATCAAAACATGGATGATGGGGTGGA
TGTACACTACAATAATCTCGATGATAAGGCTCTGAACACACAACCTTTCA
ATGACGATGACGGTTCACACAAAGAATTGATCGAGAAGTCGCCTCaataa
acatttgaaaatatgtTAGAGTTAGAGTCCATAGTGTAAGTTGGTATTAT
GCTACCTTCACAGTAGCAGCAGGCACGAGAATTCAAACTACAAAAACGAT
TATAAACAACTTTATCGCCGTACCTCACAGGGAACATAGTGATTAACCTC
CAAATAAAACGTCATATATTGATGTTCATATTACTAAAATGTTATTATGA
AGCGTCACACACAAATGGTACTgtcagtgttttttttttcataaaaacat
tTCTTTACTACAATACAATAACGAGCATAATCACATAATATTGCTAGCTA
GCTACAAGTCATCATAACAAATTCTTGACCTAACCGCATTGTGGGCAAAC
TCATCCACAATGCGATCTGCCTCATTACATACTAGTCCAAATCCAACTTT
GCCTTCGTCCTTTTCACATCGTCTCAAATTCAAAATAGTACCCATATACC
AGTTTGCGCGCCCACATGACGGACGCTTCAACCGTTGAGTTTCAGTCCCG
AAGGACAAAAGGCGAgactccaaaacaaaggaataaccgctagatacaat
acgtcgtcatgattgcggtgcgttctatgcgcgtttggATTAGAAATTag
tagcttcaatttctcttgcctgagaagcgTTAAAGTTTTGcctctagtcc
ttcgggctcgAAACTCAACGGGTTCAACACTTGTGGCAAGAGCACTTATT
ATCTAATTGGATTATCGCATACATATTGAATCAGATTGTATTAGCTCAAG
CAAGACACGTACCTTTTACCAAAATCCTCCCTCTTATGGGTGGGACCGAA
CATGAGGTATCACAAATAAATGAAGTATAATTTTGAATTGTGTAAATTGT
AAACCTTAGATTAAACCTTAGAACTATTTCTTTACGCAATGAATTTTCAT
CCCTACTTGCAGAAAACGTTATGATAGTTCATTTGAACTGTAAACagttg
aaataaatagaatctgtATCTCTT Run BLAST on NCBI transcript from alignment at sc0000145:431870..434901- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012570 ID=TCONS_00012570|Name=TCONS_00012570|organism=Clytia hemisphaerica|type=transcript|length=3032bp|location=Sequence derived from alignment at sc0000145:431870..434901- (Clytia hemisphaerica)
TGATGATGTTACGACTGAAATTAAATACTCTTACAGTGTATCTTATTCAA
CAATCTTTACAAACCTTTTAAGTCTCATTGTGTTGAAAAGAACAAATCAT
AGAATTATGAAGATATGATTTTTTTTGGTTTCATATCAAAATATATTAAG
AGTTTTGACCACTCAATTGGTCATTTTGGAGACTTGTGTAGACGGAAAAC
TCATTGAAAATTTTTTTTAAAGGTATGTACCATAAGTCTTAGCAATTTTT
AAGTTCTGCACATAATTTTTTATAAGAACGAAAGCATCCATCGTAGGGGG
GGCTTCAAAATATCTGTTCTGAAGGCACGTTCCAGCTGGATATGGTGGTC
TGTTCTTAGCGAACTAAAGAAAGTGGTCTGTTCTATTGAAGATTGTGACC
AGCTGGAAAAATATGGTCTATTCTACTGAAGATTGGGACCAGCTGGAAAA
ATATAAGCTGTTCTTATAAAAAAATATAGTATCCAAAAAACAAGGTGTCT
TAAGAATTTCCTATCTGTTCTGAGGGAATTTCAAAAAAGTCAAAAAGTCT
TTGAGATCTGTCCTTTTCCTTCTGAATGTGAAAGCTGGAAATTCTCCATC
TGTGTAGAACATCTGGAAATTGTCGATCTGTTCGCACAGATATTTAAACT
GTTAGCTGGAAATTAAGTCTCTGTTCTTAAAAGTCCTTCAATGTCGAGCT
GGAATTTAGCGATCTGTTCTCATTTTGTCAGCCCTTGTGGATAACAGTTA
ACTCGCATAAAATCAATCGCCTGGTAATTTCGTACCTGTTCCGAATGTTT
TTTTACCTCCTAGCTGGAAAAATGCATATGTTCTGAAGTAAAAATTTCTC
CCCTGGAAAACGAGGAACTGTTCTTAATTTAAGGAAAATTCTTCCAGCTG
GCAAATAAGAACAGATGTTTGCAAATTTTAGGCCGGTGGCTGTTTCTGTA
AGAACAAGTGTTATTTATGAGGCCTGGTTGTTCTCATTTATTGGCACTTT
GTTGAGCCTGAAATTGTTCTTAGATTGTTCTTACTTCTAGATACAACTGA
GACATTTTAGTTTTGATTATAAGCGTAAACTTCTTATGAACTGTTCCAGG
AATCAATTACCAAAGCAATTTTTTAAAAACGAGGTAAGCGTTGCTTGTGA
CGTAATCCATTAAAAGGTCTTATACATTAATTTTTCTTTGGCATAGGTTC
CGTCAGAAGAAGCCAATCGCAAAATGGGAATGTCTGAGAATTGGGATCGT
TTTATCGCCATTACAAAATCAAAAGGCAAGAGCCATATGCAAGCTGCACA
ATATTGGGACAGAATGCATACATTTATCAGTCTATCAATGATCATTCTAG
GTGCAACAACAACCTTTTTATCCTTAATCAGTTCAATACCGGGTTTTGTC
ATCTCCGCGTTAGCAGCCCTAGCAACTCTTATTTCCGCCATATCAGCATT
TATGAGACCTCACGATCGACGTCAACTACAAGTGGACTCGGCAAAAGAGT
TCAAAGTCTTAATGATGAAGATGGTTCGATGCGAGAAAGAACGAGAATAC
GAAGATTTGTGGAGAGAATTGAACAAAGCAATGATGGACGAGCCTTTTCT
TCCAAAGAAGTATGTCAAAGATAATCCAGAAATGGATTGGACAAAAACAC
CGGAATTACAAATTGTTATTGCTGAAAAAGAACAAGAACTTGAGGAGGTT
TTAGGTAAATCTATCCGCTGCTTTTTGAGTTCAGTATATCTGACATCACC
GACTTGTAACTTACCTGAGTATGAAATGTTATCAAACGTTAGAAAATCTG
AGTGGCCCCTCCTTTTTTGAAATTCATTCAGATTTATTGTCCTTCTATTC
TTCTTTAAGTCACATGGAAATTTCAATTACATTTCTAGGTTCAGATCATG
GAGATGATGACGTCACAGTGAACATGAATGGAAATCAAAACATGGATGAT
GGGGTGGATGTACACTACAATAATCTCGATGATAAGGCTCTGAACACACA
ACCTTTCAATGACGATGACGGTTCACACAAAGAATTGATCGAGAAGTCGC
CTCAATAAACATTTGAAAATATGTTAGAGTTAGAGTCCATAGTGTAAGTT
GGTATTATGCTACCTTCACAGTAGCAGCAGGCACGAGAATTCAAACTACA
AAAACGATTATAAACAACTTTATCGCCGTACCTCACAGGGAACATAGTGA
TTAACCTCCAAATAAAACGTCATATATTGATGTTCATATTACTAAAATGT
TATTATGAAGCGTCACACACAAATGGTACTGTCAGTGTTTTTTTTTTCAT
AAAAACATTTCTTTACTACAATACAATAACGAGCATAATCACATAATATT
GCTAGCTAGCTACAAGTCATCATAACAAATTCTTGACCTAACCGCATTGT
GGGCAAACTCATCCACAATGCGATCTGCCTCATTACATACTAGTCCAAAT
CCAACTTTGCCTTCGTCCTTTTCACATCGTCTCAAATTCAAAATAGTACC
CATATACCAGTTTGCGCGCCCACATGACGGACGCTTCAACCGTTGAGTTT
CAGTCCCGAAGGACAAAAGGCGAGACTCCAAAACAAAGGAATAACCGCTA
GATACAATACGTCGTCATGATTGCGGTGCGTTCTATGCGCGTTTGGATTA
GAAATTAGTAGCTTCAATTTCTCTTGCCTGAGAAGCGTTAAAGTTTTGCC
TCTAGTCCTTCGGGCTCGAAACTCAACGGGTTCAACACTTGTGGCAAGAG
CACTTATTATCTAATTGGATTATCGCATACATATTGAATCAGATTGTATT
AGCTCAAGCAAGACACGTACCTTTTACCAAAATCCTCCCTCTTATGGGTG
GGACCGAACATGAGGTATCACAAATAAATGAAGTATAATTTTGAATTGTG
TAAATTGTAAACCTTAGATTAAACCTTAGAACTATTTCTTTACGCAATGA
ATTTTCATCCCTACTTGCAGAAAACGTTATGATAGTTCATTTGAACTGTA
AACAGTTGAAATAAATAGAATCTGTATCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012570-exon-sc0000145-1575043694:434680..434901 | TCONS_00012570-exon-sc0000145-1575043694:434680..434901 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1575043694:433198..433705 | TCONS_00012570-exon-sc0000145-1575043694:433198..433705 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1575043694:431870..433013 | TCONS_00012570-exon-sc0000145-1575043694:431870..433013 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1510915933:434680..434901 | TCONS_00012570-exon-sc0000145-1510915933:434680..434901 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1510915933:433198..433705 | TCONS_00012570-exon-sc0000145-1510915933:433198..433705 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1510915933:431870..433013 | TCONS_00012570-exon-sc0000145-1510915933:431870..433013 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1491911889:434680..434901 | TCONS_00012570-exon-sc0000145-1491911889:434680..434901 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1491911889:433198..433705 | TCONS_00012570-exon-sc0000145-1491911889:433198..433705 | Clytia hemisphaerica | exon |
| TCONS_00012570-exon-sc0000145-1491911889:431870..433013 | TCONS_00012570-exon-sc0000145-1491911889:431870..433013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:431870..434901 - |
Blast
The following BLAST results are available for this feature:
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