TCONS_00012571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012571
Unique NameTCONS_00012571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012571 ID=TCONS_00012571|Name=TCONS_00012571|organism=Clytia hemisphaerica|type=transcript|length=1720bp
TTAGCTTGATCCTAAAAAGACATGAAAACATCAGCAAAGCTTTTTACTCG
AATATGAAGATGTATGAGGTTCCGTCAGAAGAAGCCAATCGCAAAATGGG
AATGTCTGAGAATTGGGATCGTTTTATCGCcattacaaaatcaaaaggCA
AGAGCCATATGCAAGCTGCACAATATTGGGACAGAATGCATACATTTATC
AGTCTATCAATGATCATTCTAGGTGCAACAACAACCTTTTTATCCTTAAT
CAGTTCAATACCGGGTTTTGTCATCTCCGCGTTAGCAGCCCTAGCAACTC
TTATTTCCGCCATATCAGCATTTATGAGACCTCACGATCGACGTCAACTA
CAAGTGGACTCGGCAAAAGAGTTCAAAGTCTTAATGATGAAGATGGTTCG
ATGCGAGAAAGAACGAGAATACGAAGATTTGTGGAGAGAATTGAACAAAG
CAATGATGGACGAGCCTTTTCTTCCAAAGAAGTATGTCAAAGATAATCCA
GAAATGGATTGGACAAAAACACCGGAATTACAAATTGTTATTGCTGAAAA
AGAACAAGAACTTGAGGAGGTTTTAGGTTCAGATCATGGAGATGATGACG
TCACAGTGAACATGAATGGAAATCAAAACATGGATGATGGGGTGGATGTA
CACTACAATAATCTCGATGATAAGGCTCTGAACACACAACCTTTCAATGA
CGATGACGGTTCACACAAAGAATTGATCGAGAAGTCGCCTCaataaacat
ttgaaaatatgtTAGAGTTAGAGTCCATAGTGTAAGTTGGTATTATGCTA
CCTTCACAGTAGCAGCAGGCACGAGAATTCAAACTACAAAAACGATTATA
AACAACTTTATCGCCGTACCTCACAGGGAACATAGTGATTAACCTCCAAA
TAAAACGTCATATATTGATGTTCATATTACTAAAATGTTATTATGAAGCG
TCACACACAAATGGTACTgtcagtgttttttttttcataaaaacattTCT
TTACTACAATACAATAACGAGCATAATCACATAATATTGCTAGCTAGCTA
CAAGTCATCATAACAAATTCTTGACCTAACCGCATTGTGGGCAAACTCAT
CCACAATGCGATCTGCCTCATTACATACTAGTCCAAATCCAACTTTGCCT
TCGTCCTTTTCACATCGTCTCAAATTCAAAATAGTACCCATATACCAGTT
TGCGCGCCCACATGACGGACGCTTCAACCGTTGAGTTTCAGTCCCGAAGG
ACAAAAGGCGAgactccaaaacaaaggaataaccgctagatacaatacgt
cgtcatgattgcggtgcgttctatgcgcgtttggATTAGAAATTagtagc
ttcaatttctcttgcctgagaagcgTTAAAGTTTTGcctctagtccttcg
ggctcgAAACTCAACGGGTTCAACACTTGTGGCAAGAGCACTTATTATCT
AATTGGATTATCGCATACATATTGAATCAGATTGTATTAGCTCAAGCAAG
ACACGTACCTTTTACCAAAATCCTCCCTCTTATGGGTGGGACCGAACATG
AGGTATCACAAATAAATGAAGTATAATTTTGAATTGTGTAAATTGTAAAC
CTTAGATTAAACCTTAGAACTATTTCTTTACGCAATGAATTTTCATCCCT
ACTTGCAGAAAACGTTATGATAGTTCATTTGAACTGTAAACagttgaaat
aaatagaatctgtATCTCTT
Run BLAST on NCBI

protein sequence of TCONS_00012571-protein

>TCONS_00012571-protein ID=TCONS_00012571-protein|Name=TCONS_00012571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
SLILKRHENISKAFYSNMKMYEVPSEEANRKMGMSENWDRFIAITKSKGK
SHMQAAQYWDRMHTFISLSMIILGATTTFLSLISSIPGFVISALAALATL
ISAISAFMRPHDRRQLQVDSAKEFKVLMMKMVRCEKEREYEDLWRELNKA
MMDEPFLPKKYVKDNPEMDWTKTPELQIVIAEKEQELEEVLGSDHGDDDV
TVNMNGNQNMDDGVDVHYNNLDDKALNTQPFNDDDGSHKELIEKSPQ
Run BLAST on NCBI

transcript from alignment at sc0000145:431870..435893-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012571 ID=TCONS_00012571|Name=TCONS_00012571|organism=Clytia hemisphaerica|type=transcript|length=4024bp|location=Sequence derived from alignment at sc0000145:431870..435893- (Clytia hemisphaerica)
TTAGCTTGATCCTAAAAAGACATGAAAACATCAGCAAAGCTTTTTACTCG
AATATGAAGATGTATGAGGTAAGGGTTTCTTCATGTGTGACTAAAATTGA
ATGGAATTTTGGAAAGATTCTGTTATATTACTGTGAAATCTTAAAATTAA
GTCAATAGAATATATTGTTTTAAATTTGATAATCGGGCGAGCTTAAAAGC
CCGAAATTCTAGAAAGAAATCTTTAACCTTTCCCAAAGAAAAAAATAAAT
CCTTGTAAGTTTTACACCGTTGGAGAGATTATTCAGAGTAGAATATTTTG
AAAGTCAAAAGACTTGAAAATTTGAAACGTGAAGATGAAAAAAAAATGCG
AAAAGATTTTGTTCTTTTGGTTCAAATATTATGATATTACACTTGTTAGA
ACTTTTGAATCTCACTGATTTTAAATTTGTGGCCGTTTTTTTACATTTTT
GCCCTGTACAAGCCGGGTGTGACGGTGTTATTATTTTCCAATTTTCAGGA
TTCCGGGATGCAGCAAAAATTTTGACGGGAAAACGGTATTTCGAACCCCT
ACAAACCCCCCATATAAGGCTTCACTTATTCTGTCAAGGCCTTCGCATGT
CCTCTTTTGTTCATAAATTATAGATTTTAATTCAGATCTCTGATAAGAAG
GTGGGTGTTTATGTTTTCAAAAATTGGTAGCGACCAGGTCCTGATTACCT
TCTTCAATTTTTTTGGGAATTTATAAAACTCGTTGCATATCCCTGGAATC
AGCGATTTGTCTTGACAAACTTTTCTTGACGTCTTGACGATGACTTTCAG
AAATGCCAAATATTTATGTATTTTTCCTGACGACAGCTTTCGAAACATTG
AAATTTTAATACTTATTACTTTACCAGATTATCAGATTCCATTCATTCAA
TTTTATACAGTTTAATTTTCTCGCTCGTCGTCTAAGGAGATTCAATAGCG
AGGTAAAATTTCAATAAAATCAGTTGACACTTTAGCACATAATGATGATG
TTACGACTGAAATTAAATACTCTTACAGTGTATCTTATTCAACAATCTTT
ACAAACCTTTTAAGTCTCATTGTGTTGAAAAGAACAAATCATAGAATTAT
GAAGATATGATTTTTTTTGGTTTCATATCAAAATATATTAAGAGTTTTGA
CCACTCAATTGGTCATTTTGGAGACTTGTGTAGACGGAAAACTCATTGAA
AATTTTTTTTAAAGGTATGTACCATAAGTCTTAGCAATTTTTAAGTTCTG
CACATAATTTTTTATAAGAACGAAAGCATCCATCGTAGGGGGGGCTTCAA
AATATCTGTTCTGAAGGCACGTTCCAGCTGGATATGGTGGTCTGTTCTTA
GCGAACTAAAGAAAGTGGTCTGTTCTATTGAAGATTGTGACCAGCTGGAA
AAATATGGTCTATTCTACTGAAGATTGGGACCAGCTGGAAAAATATAAGC
TGTTCTTATAAAAAAATATAGTATCCAAAAAACAAGGTGTCTTAAGAATT
TCCTATCTGTTCTGAGGGAATTTCAAAAAAGTCAAAAAGTCTTTGAGATC
TGTCCTTTTCCTTCTGAATGTGAAAGCTGGAAATTCTCCATCTGTGTAGA
ACATCTGGAAATTGTCGATCTGTTCGCACAGATATTTAAACTGTTAGCTG
GAAATTAAGTCTCTGTTCTTAAAAGTCCTTCAATGTCGAGCTGGAATTTA
GCGATCTGTTCTCATTTTGTCAGCCCTTGTGGATAACAGTTAACTCGCAT
AAAATCAATCGCCTGGTAATTTCGTACCTGTTCCGAATGTTTTTTTACCT
CCTAGCTGGAAAAATGCATATGTTCTGAAGTAAAAATTTCTCCCCTGGAA
AACGAGGAACTGTTCTTAATTTAAGGAAAATTCTTCCAGCTGGCAAATAA
GAACAGATGTTTGCAAATTTTAGGCCGGTGGCTGTTTCTGTAAGAACAAG
TGTTATTTATGAGGCCTGGTTGTTCTCATTTATTGGCACTTTGTTGAGCC
TGAAATTGTTCTTAGATTGTTCTTACTTCTAGATACAACTGAGACATTTT
AGTTTTGATTATAAGCGTAAACTTCTTATGAACTGTTCCAGGAATCAATT
ACCAAAGCAATTTTTTAAAAACGAGGTAAGCGTTGCTTGTGACGTAATCC
ATTAAAAGGTCTTATACATTAATTTTTCTTTGGCATAGGTTCCGTCAGAA
GAAGCCAATCGCAAAATGGGAATGTCTGAGAATTGGGATCGTTTTATCGC
CATTACAAAATCAAAAGGCAAGAGCCATATGCAAGCTGCACAATATTGGG
ACAGAATGCATACATTTATCAGTCTATCAATGATCATTCTAGGTGCAACA
ACAACCTTTTTATCCTTAATCAGTTCAATACCGGGTTTTGTCATCTCCGC
GTTAGCAGCCCTAGCAACTCTTATTTCCGCCATATCAGCATTTATGAGAC
CTCACGATCGACGTCAACTACAAGTGGACTCGGCAAAAGAGTTCAAAGTC
TTAATGATGAAGATGGTTCGATGCGAGAAAGAACGAGAATACGAAGATTT
GTGGAGAGAATTGAACAAAGCAATGATGGACGAGCCTTTTCTTCCAAAGA
AGTATGTCAAAGATAATCCAGAAATGGATTGGACAAAAACACCGGAATTA
CAAATTGTTATTGCTGAAAAAGAACAAGAACTTGAGGAGGTTTTAGGTAA
ATCTATCCGCTGCTTTTTGAGTTCAGTATATCTGACATCACCGACTTGTA
ACTTACCTGAGTATGAAATGTTATCAAACGTTAGAAAATCTGAGTGGCCC
CTCCTTTTTTGAAATTCATTCAGATTTATTGTCCTTCTATTCTTCTTTAA
GTCACATGGAAATTTCAATTACATTTCTAGGTTCAGATCATGGAGATGAT
GACGTCACAGTGAACATGAATGGAAATCAAAACATGGATGATGGGGTGGA
TGTACACTACAATAATCTCGATGATAAGGCTCTGAACACACAACCTTTCA
ATGACGATGACGGTTCACACAAAGAATTGATCGAGAAGTCGCCTCAATAA
ACATTTGAAAATATGTTAGAGTTAGAGTCCATAGTGTAAGTTGGTATTAT
GCTACCTTCACAGTAGCAGCAGGCACGAGAATTCAAACTACAAAAACGAT
TATAAACAACTTTATCGCCGTACCTCACAGGGAACATAGTGATTAACCTC
CAAATAAAACGTCATATATTGATGTTCATATTACTAAAATGTTATTATGA
AGCGTCACACACAAATGGTACTGTCAGTGTTTTTTTTTTCATAAAAACAT
TTCTTTACTACAATACAATAACGAGCATAATCACATAATATTGCTAGCTA
GCTACAAGTCATCATAACAAATTCTTGACCTAACCGCATTGTGGGCAAAC
TCATCCACAATGCGATCTGCCTCATTACATACTAGTCCAAATCCAACTTT
GCCTTCGTCCTTTTCACATCGTCTCAAATTCAAAATAGTACCCATATACC
AGTTTGCGCGCCCACATGACGGACGCTTCAACCGTTGAGTTTCAGTCCCG
AAGGACAAAAGGCGAGACTCCAAAACAAAGGAATAACCGCTAGATACAAT
ACGTCGTCATGATTGCGGTGCGTTCTATGCGCGTTTGGATTAGAAATTAG
TAGCTTCAATTTCTCTTGCCTGAGAAGCGTTAAAGTTTTGCCTCTAGTCC
TTCGGGCTCGAAACTCAACGGGTTCAACACTTGTGGCAAGAGCACTTATT
ATCTAATTGGATTATCGCATACATATTGAATCAGATTGTATTAGCTCAAG
CAAGACACGTACCTTTTACCAAAATCCTCCCTCTTATGGGTGGGACCGAA
CATGAGGTATCACAAATAAATGAAGTATAATTTTGAATTGTGTAAATTGT
AAACCTTAGATTAAACCTTAGAACTATTTCTTTACGCAATGAATTTTCAT
CCCTACTTGCAGAAAACGTTATGATAGTTCATTTGAACTGTAAACAGTTG
AAATAAATAGAATCTGTATCTCTT

Coding sequence (CDS) from alignment at sc0000145:431870..435893-

>TCONS_00012571 ID=TCONS_00012571|Name=TCONS_00012571|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000145:431870..435893- (Clytia hemisphaerica)
GTTCAGATCATGGAGATGATGACGTCACAGTGAACATGAATGGAAATCAA
AACATGGATGATGGGGTGGATGTACACTACAATAATCTCGATGATAAGGC
TCTGAACACACAACCTTTCAATGACGATGACGGTTCACACAAAGAATTGA
TCGAGAAGTCGCCTCAATAAGTTCCGTCAGAAGAAGCCAATCGCAAAATG
GGAATGTCTGAGAATTGGGATCGTTTTATCGCCATTACAAAATCAAAAGG
CAAGAGCCATATGCAAGCTGCACAATATTGGGACAGAATGCATACATTTA
TCAGTCTATCAATGATCATTCTAGGTGCAACAACAACCTTTTTATCCTTA
ATCAGTTCAATACCGGGTTTTGTCATCTCCGCGTTAGCAGCCCTAGCAAC
TCTTATTTCCGCCATATCAGCATTTATGAGACCTCACGATCGACGTCAAC
TACAAGTGGACTCGGCAAAAGAGTTCAAAGTCTTAATGATGAAGATGGTT
CGATGCGAGAAAGAACGAGAATACGAAGATTTGTGGAGAGAATTGAACAA
AGCAATGATGGACGAGCCTTTTCTTCCAAAGAAGTATGTCAAAGATAATC
CAGAAATGGATTGGACAAAAACACCGGAATTACAAATTGTTATTGCTGAA
AAAGAACAAGAACTTGAGGAGGTTTTAGAGCTTGATCCTAAAAAGACATG
AAAACATCAGCAAAGCTTTTTACTCGAATATGAAGATGTATGAGGTTCAG
ATCATGGAGATGATGACGTCACAGTGAACATGAATGGAAATCAAAACATG
GATGATGGGGTGGATGTACACTACAATAATCTCGATGATAAGGCTCTGAA
CACACAACCTTTCAATGACGATGACGGTTCACACAAAGAATTGATCGAGA
AGTCGCCTCAATAAGTTCCGTCAGAAGAAGCCAATCGCAAAATGGGAATG
TCTGAGAATTGGGATCGTTTTATCGCCATTACAAAATCAAAAGGCAAGAG
CCATATGCAAGCTGCACAATATTGGGACAGAATGCATACATTTATCAGTC
TATCAATGATCATTCTAGGTGCAACAACAACCTTTTTATCCTTAATCAGT
TCAATACCGGGTTTTGTCATCTCCGCGTTAGCAGCCCTAGCAACTCTTAT
TTCCGCCATATCAGCATTTATGAGACCTCACGATCGACGTCAACTACAAG
TGGACTCGGCAAAAGAGTTCAAAGTCTTAATGATGAAGATGGTTCGATGC
GAGAAAGAACGAGAATACGAAGATTTGTGGAGAGAATTGAACAAAGCAAT
GATGGACGAGCCTTTTCTTCCAAAGAAGTATGTCAAAGATAATCCAGAAA
TGGATTGGACAAAAACACCGGAATTACAAATTGTTATTGCTGAAAAAGAA
CAAGAACTTGAGGAGGTTTTAGAGCTTGATCCTAAAAAGACATGAAAACA
TCAGCAAAGCTTTTTACTCGAATATGAAGATGTATGAGGTTCAGATCATG
GAGATGATGACGTCACAGTGAACATGAATGGAAATCAAAACATGGATGAT
GGGGTGGATGTACACTACAATAATCTCGATGATAAGGCTCTGAACACACA
ACCTTTCAATGACGATGACGGTTCACACAAAGAATTGATCGAGAAGTCGC
CTCAATAAGTTCCGTCAGAAGAAGCCAATCGCAAAATGGGAATGTCTGAG
AATTGGGATCGTTTTATCGCCATTACAAAATCAAAAGGCAAGAGCCATAT
GCAAGCTGCACAATATTGGGACAGAATGCATACATTTATCAGTCTATCAA
TGATCATTCTAGGTGCAACAACAACCTTTTTATCCTTAATCAGTTCAATA
CCGGGTTTTGTCATCTCCGCGTTAGCAGCCCTAGCAACTCTTATTTCCGC
CATATCAGCATTTATGAGACCTCACGATCGACGTCAACTACAAGTGGACT
CGGCAAAAGAGTTCAAAGTCTTAATGATGAAGATGGTTCGATGCGAGAAA
GAACGAGAATACGAAGATTTGTGGAGAGAATTGAACAAAGCAATGATGGA
CGAGCCTTTTCTTCCAAAGAAGTATGTCAAAGATAATCCAGAAATGGATT
GGACAAAAACACCGGAATTACAAATTGTTATTGCTGAAAAAGAACAAGAA
CTTGAGGAGGTTTTAGAGCTTGATCCTAAAAAGACATGAAAACATCAGCA
AAGCTTTTTACTCGAATATGAAGATGTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007051XLOC_007051Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012571-proteinTCONS_00012571-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012571-exon-sc0000145-1575043694:435826..435893TCONS_00012571-exon-sc0000145-1575043694:435826..435893Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1575043694:433198..433705TCONS_00012571-exon-sc0000145-1575043694:433198..433705Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1575043694:431870..433013TCONS_00012571-exon-sc0000145-1575043694:431870..433013Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1510915933:435826..435893TCONS_00012571-exon-sc0000145-1510915933:435826..435893Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1510915933:433198..433705TCONS_00012571-exon-sc0000145-1510915933:433198..433705Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1510915933:431870..433013TCONS_00012571-exon-sc0000145-1510915933:431870..433013Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1491911889:435826..435893TCONS_00012571-exon-sc0000145-1491911889:435826..435893Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1491911889:433198..433705TCONS_00012571-exon-sc0000145-1491911889:433198..433705Clytia hemisphaericaexon
TCONS_00012571-exon-sc0000145-1491911889:431870..433013TCONS_00012571-exon-sc0000145-1491911889:431870..433013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:431870..435893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0531697	0.0260091	0.126654	0	0	0.0282605	0.118715	0.0490159	0	3.15703e-07	0.0468467	0.0648677	0.0399976	0	0.176609	1.16432	0.0998375	0.0522364	2.31491	1.34475	0.5069	4.42882	14.9621	20.6428	0	2.62805	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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