TCONS_00012575 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012575
Unique Name	TCONS_00012575
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2991

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000145:480051..484179-
coding sequence from alignment at sc0000145:480051..484179-

transcript sequence

>TCONS_00012575 ID=TCONS_00012575|Name=TCONS_00012575|organism=Clytia hemisphaerica|type=transcript|length=2991bp
ACTGCTATGCATGTTTTGGTTTTGCTGCGTACTAATTTTGTTGTTGTGTC
TAGCGGGACTAGTATTATAATTTTGTCTTGCTTGATTATTTAATAATTAC
TTTGTAATATCGAACAACTGCAGTTTTAAGTTGACATATACAAACATACG
CTCTATGTGTAGTTTCTTACTTATGATCACATggcattcaaagaaaattc
acaTACATCATAACCTCAATCACCACCGACAGACAATTTCATTCCTTCAA
CCAAAACACCACCCAGTGGAAGTTTGCAAATTCCAACTACCACAACCCTC
TACAAGGATACATattcattaaaatcattatgaCCTCATTCACCTCAATG
CCCATCAACTGAAATAAGCAGAAGTCGAACACCTCCTCCTCCTTCAGTAA
TACGCAGTCGACCACCACCTCCTCCTCCTTCAGCGATGCAGAGTGAACCA
CCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGT
AAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGAC
TACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCT
CCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGA
TGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTC
TGCCTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATA
CGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACC
ACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAA
AACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTA
CCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCC
TTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATG
GCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCG
CCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATC
TTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAGTGGACCACCACCTCCTCCTCCTTCTTCTTCAGCAATACGCAG
TCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGTGAACCACCACTTC
CTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGT
AGTGAACCACCTCATCCTCCGCCTTCAGTAATACACTATGGACCACCACC
TCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCTTCTCGTTCAGCAA
TACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACCA
CCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCACCTCCTCC
TCCTTCAGCGATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATAC
GCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCA
CCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCACC
TTCAGCAATACGCAATGGACCACCACCTCCTCCTTCATTAATACGCAGTG
GACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTCTTCCA
CCTTCAGCGATACGCAGTGGAccacctcctcctcctccttcAGTAATACG
CAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGTGAACCACCTCCTT
CTCGTTCAGTAACACGCAGTGGACCACCACCTCATCCTTCAGCAAAACGC
AGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTGGACCACCACCTCC
ACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACGCA
GTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGGACCACCTCCTCCA
CCTTCAGCAATACATAGCGGAACACCTCCAGCTACATCGACTAATAAATT
TTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAAAGAAGCAATATGT
TTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAATCTAAAAAGTAGC
AGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCGTTGAAGATGTTTG
CGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTGTTCCGCT
TTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGAATCACTA
GTAGACGCTCTTAAAATAGAACGTATCGGTCACCGAAGGAAGATTATGAG
GAATTTAACTAAAttattagaaaaagaaaaagaagagaagAGAACTAAAG
AAAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAG
AAGaaggaaacaaaagaaaaagaggaGGAAACACCGGACGAATTTCTCTG
TCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGACGGTT
ACACATACGAACGAACATCAATCACTCAATGGTTTGAAACTGGAAACAAT
AGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAA
TAGATCCCTTAAAGACGCTATTAACAGACATCTTGGACAGTAATTCTATG
GACACGAACACAAAAATTAAGTACAATTGTACCGGCCCTATCGTACACAA
CTTGTACACAATGTATTAATGAGTCTTTTGGCAATCGATCAAGATTCCGT
GGgacttttgatattttgatcaAACTGATTTGATAAAACAAAACGTAATG
AACTACCATTTAGCTATATCAACTTAAAAATTTATTAGATA

Run BLAST on NCBI

protein sequence of TCONS_00012575-protein

>TCONS_00012575-protein ID=TCONS_00012575-protein|Name=TCONS_00012575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp
MQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSVIHCGLPPPPPSVIRSR
PPPPPPSAMQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSVIHCGLPPP
PPSVIRSRPPPPPSSAMQSEPPLPPPVMRDGPPPPPSVKRSEPPQLLPSV
IHCGLPPPPPSVIRSRPPPPPPSAMQSEPPLPPPVMRDGPPPPPSVKRSE
PPHPPPSVIHYGPPPPPPSVIRSGPSSSRSAIRSGPPHLSPSAIRSGPPP
PPPSVIRSGPPPPPPSSSAIRSRPPHPPPSAMQSEPPLPPPVMRDGPPPP
PSVKRSEPPHPPPSVIHYGPPPPPPSVIRSGPSSSRSAIRSGPPHLSPSA
IRSGPPPPPPSVIRNGPPPPPPPSAIRSGPPHLSPSAIRSGPPPPPPSVI
RNGPPPPPPPSAIRSGPPPPPPSAIRNGPPPPPSLIRSGPPPPPTLAMHS
EPPLPPSAIRSGPPPPPPSVIRSGASTPPSATRSEPPPSRSVTRSGPPPH
PSAKRSEPPPSRSVTHSGPPPPPSATRSEPPPSRSVTRSRPPPPPSVIRS
GPPPPPSAIHSGTPPATSTNKFFEPPPGVSWLSKRSNMFQPTKREPPAPD
NLKSSSGDWRVKLKSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQ
NEESLVDALKIERIGHRRKIMRNLTKLLEKEKEEKRTKEKEEETPDEFLC
PITXEKKETKEKEEETPDEFLCPITQELMTDPVIVADGYTYERTSITQWF
ETGNNRSPMTNLPLENRNLVPNRSLKDAINRHLGQ

Run BLAST on NCBI

transcript from alignment at sc0000145:480051..484179-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012575 ID=TCONS_00012575|Name=TCONS_00012575|organism=Clytia hemisphaerica|type=transcript|length=4129bp|location=Sequence derived from alignment at sc0000145:480051..484179- (Clytia hemisphaerica)
ACTGCTATGCATGTTTTGGTTTTGCTGCGTACTAATTTTGTTGTTGTGTC
TAGCGGGACTAGTATTATAATTTTGTCTTGCTTGATTATTTAATAATTAC
TTTGTAATATCGAACAACTGCAGTTTTAAGTTGACATATACAAACATACG
CTCTATGTGTAGTTTCTTACTTATGATCACATGGCATTCAAAGAAAATTC
ACATACATCATAACCTCAATCACCACCGACAGACAATTTCATTCCTTCAA
CCAAAACACCACCCAGTGGAAGTTTGCAAATTCCAACTACCACAACCCTC
TACAAGGATACATATTCATTAAAATCATTATGACCTCATTCACCTCAATG
CCCATCAACTGAAATAAGCAGAAGTCGAACACCTCCTCCTCCTTCAGTAA
TACGCAGTCGACCACCACCTCCTCCTCCTTCAGCGATGCAGAGTGAACCA
CCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGT
AAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGAC
TACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCT
CCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGA
TGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTC
TGCCTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATA
CGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACC
ACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAA
AACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTA
CCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCC
TTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATG
GCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCG
CCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATC
TTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACC
ACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCTCCTCCTC
CTTCAGTAATACACTTTGGACTACCACCTCCTCCTTCATTAATACGCAGT
GGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTCTTCC
ACCTTCAGCGATACGCAATGGACCACCACCTCCTCCTCCTTCTTCTTCAG
CAATACGCAGTCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGTGAA
CCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTC
AGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAATACACTATG
GACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCTTCT
CGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACG
CAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCAC
CACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACATCTTTCTCCT
TCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAA
TGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCAC
CTCCTCCACCTTCAGCAATACGCAATGGACCACCACCTCCTCCTTCATTA
ATACGCAGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACC
ACCTCTTCCACCTTCAGCGATACGCAGTGGACCACCTCCTCCTCCTCCTT
CAGTAATACGCAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGTGAA
CCACCTCCTTCTCGTTCAGTAACACGCAGTGGACCACCACCTCATCCTTC
AGCAAAACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTGGAC
CACCACCTCCACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCA
GTAACACGCAGTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGGACC
ACCTCCTCCACCTTCAGCAATACATAGCGGAACACCTCCAGCTACATCGA
CTAATAAATTTTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAAAGA
AGCAATATGTTTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAATCT
AAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCGTTG
AAGATGTTTGCGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAA
TTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGA
AGAATCACTAGTAGACGCTCTTAAAATAGGTTGGTTAAAAACGTCAAGTT
CTATTCTTTTTTTAGCTGTTCTCCGTTCCCTTCGGCATTTGAAATATAGT
TCGGAATGAGATTAAATATTAAATGCTTCTTTAAAATATAGTGACTGCTC
TTGAGATACGTTCATAGATCCACTATGGCACTATGTCTGGTCCCAATTTA
GGCATTGACCAATTGCTGTCACACTTATCACATAGAAGCAAAAAAAAATA
GATTTTACACTAGTTTCAATTGCAGACATAAAACTATTTCCTTTTAGATA
ACCTTTCGTTAAGGGCTACAAACATTACACTAATTTTATCACAATTCCCG
ATTTCGCTTTGTTTTCAGAACGTATCGGTCACCGAAGGAAGATTATGAGG
AATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACTAAAGA
AAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAGA
AGAAGGAAACAAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGT
CCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGGTAAAAA
AAGAGATTGCAAATATATAATTTTCACAGCTCTGAATTATAATCACTGTA
ATTAATTAGCGCCCCCACCCCCTTGAACCCTATTTTGGGTAACCCTACTG
CCACTGCCTTTACGAAGACTGATATTATAATTTGTGAATTTTACCACTCT
TTGAAGCATTTCGAAAATCTAGGATGCCTCCTCCCATTAACCTCCAAACC
CGAAGGGCTAGACTCGTGACTCCAATAAGTAGTTTCATTTCCCATCCAGA
ACGCATGCGCGTGGTTTTTCCACAAACACCGGATTAGAACTAAAAGCTAT
CACTAGATTTCAAAAAATGCAGTCCTCCAAAGCAAAGGAACCACTAGATA
CAATCAGTAGTCATGATTACAGCTTTTATAAAATATCACACCAGGCACGT
GGACTGGAAATAAGGGGCTTCACTTTTTGCTGCCTGGGAAAGGTTCGAGA
TTCTACTTTAGCCCTTCGGGCTTTAAACTCAATGCCTCCTCCCTTACAGG
GCGTTTCCCTTTGCTTAGGTACCCTTTCCTTAGGACCTTTAATCATCCTA
ATCTATTAATTTTTCTTTCTATCATTCTTTAGACGGTTACACATACGAAC
GAACATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATG
ACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCCCTTAA
AGACGCTATTAACAGACATCTTGGACAGTAATTCTATGGACACGAACACA
AAAATTAAGTACAATTGTACCGGCCCTATCGTACACAACTTGTACACAAT
GTATTAATGAGTCTTTTGGCAATCGATCAAGATTCCGTGGGACTTTTGAT
ATTTTGATCAAACTGATTTGATAAAACAAAACGTAATGAACTACCATTTA
GCTATATCAACTTAAAAATTTATTAGATA

Coding sequence (CDS) from alignment at sc0000145:480051..484179-

>TCONS_00012575 ID=TCONS_00012575|Name=TCONS_00012575|organism=Clytia hemisphaerica|type=CDS|length=9432bp|location=Sequence derived from alignment at sc0000145:480051..484179- (Clytia hemisphaerica)
ACGGTTACACATACGAACGAACATCAATCACTCAATGGTTTGAAACTGGA
AACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGT
TCCAAATAGATCCCTTAAAGACGCTATTAACAGACATCTTGGACAGTAAA
ACGTATCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAATTATTAG
AAAAAGAAAAAGAAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACGCCG
GACGAATTTCTTTGTCCGATAACTCNAGAGAAGAAGGAAACAAAAGAAAA
AGAGGAGGAAACACCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGA
TGACTGATCCTGTTATCGTGGCAGCTCCTCCTCCTTCTTCTTCAGCAATA
CGCAGTCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGTGAACCACC
ACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAA
AACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAATACACTATGGACCA
CCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCTTCTCGTTC
AGCAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTG
GACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCACCT
CCTCCTCCTTCAGCGATACGCAGTGGACCACCACATCTTTCTCCTTCAGC
GATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGAC
CACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACCTCCT
CCACCTTCAGCAATACGCAATGGACCACCACCTCCTCCTTCATTAATACG
CAGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTC
TTCCACCTTCAGCGATACGCAGTGGACCACCTCCTCCTCCTCCTTCAGTA
ATACGCAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGTGAACCACC
TCCTTCTCGTTCAGTAACACGCAGTGGACCACCACCTCATCCTTCAGCAA
AACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTGGACCACCA
CCTCCACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCAGTAAC
ACGCAGTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGGACCACCTC
CTCCACCTTCAGCAATACATAGCGGAACACCTCCAGCTACATCGACTAAT
AAATTTTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAAAGAAGCAA
TATGTTTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAATCTAAAAA
GTAGCAGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCGTTGAAGAT
GTTTGCGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTGTT
CCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGAAT
CACTAGTAGACGCTCTTAAAATAGATGCAGAGTGAACCACCACTTCCTCC
TCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTG
AACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTACCACCTCCT
CCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCCTTCAGCGAT
GCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCAC
CTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTA
ATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACC
ACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACCACTTCCTCCTC
CAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAA
CCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTACCACCTCCTCC
TCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCCTTCAGCAATGC
AGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCT
CCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAAT
ACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCAT
CTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCTTCA
GCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGG
ACCACCACACGGTTACACATACGAACGAACATCAATCACTCAATGGTTTG
AAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGA
AACCTCGTTCCAAATAGATCCCTTAAAGACGCTATTAACAGACATCTTGG
ACAGTAAAACGTATCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAA
ATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACTAAAGAAAAAGAGGAGG
AAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAGAAGAAGGAAACA
AAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGTCCGATAACTCA
AGAGTTGATGACTGATCCTGTTATCGTGGCAGCTCCTCCTCCTTCTTCTT
CAGCAATACGCAGTCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGT
GAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCC
TTCAGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAATACACT
ATGGACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCT
TCTCGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGAT
ACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCAC
CACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACATCTTTCT
CCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAATGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCAC
CACCTCCTCCACCTTCAGCAATACGCAATGGACCACCACCTCCTCCTTCA
TTAATACGCAGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGA
ACCACCTCTTCCACCTTCAGCGATACGCAGTGGACCACCTCCTCCTCCTC
CTTCAGTAATACGCAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGT
GAACCACCTCCTTCTCGTTCAGTAACACGCAGTGGACCACCACCTCATCC
TTCAGCAAAACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTG
GACCACCACCTCCACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGT
TCAGTAACACGCAGTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGG
ACCACCTCCTCCACCTTCAGCAATACATAGCGGAACACCTCCAGCTACAT
CGACTAATAAATTTTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAA
AGAAGCAATATGTTTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAA
TCTAAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCG
TTGAAGATGTTTGCGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGT
GAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAA
TGAAGAATCACTAGTAGACGCTCTTAAAATAGATGCAGAGTGAACCACCA
CTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAA
ACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTAC
CACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCCT
TCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGG
CCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTCTGC
CTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATACGC
AGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAACCACCACT
TCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAAC
GTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTACCA
CCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTCCTTC
AGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCC
CACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCGCCT
TCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACGCAG
TGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATCTTT
CTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATA
CGCAGTGGACCACCACACGGTTACACATACGAACGAACATCAATCACTCA
ATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGG
AAAACCGAAACCTCGTTCCAAATAGATCCCTTAAAGACGCTATTAACAGA
CATCTTGGACAGTAAAACGTATCGGTCACCGAAGGAAGATTATGAGGAAT
TTAACTAAATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACTAAAGAAAA
AGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAGAGAAGA
AGGAAACAAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGTCCG
ATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGCTCCTCCTCC
TTCTTCTTCAGCAATACGCAGTCGACCACCACATCCTCCTCCTTCAGCGA
TGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCA
CCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGT
AATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGAC
CATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCT
TCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAA
TGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCAC
ATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCA
GTAATACGCAATGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAG
TGGACCACCACCTCCTCCACCTTCAGCAATACGCAATGGACCACCACCTC
CTCCTTCATTAATACGCAGTGGACCACCCCCTCCTCCAACTTTAGCAATG
CACAGTGAACCACCTCTTCCACCTTCAGCGATACGCAGTGGACCACCTCC
TCCTCCTCCTTCAGTAATACGCAGTGGAGCATCTACTCCACCTTCAGCAA
CACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACGCAGTGGACCACCA
CCTCATCCTTCAGCAAAACGCAGTGAACCACCTCCTTCTCGTTCAGTAAC
ACACAGTGGACCACCACCTCCACCTTCAGCAACACGCAGTGAACCACCTC
CTTCTCGTTCAGTAACACGCAGTCGACCACCACCTCCTCCTTCAGTAATA
CGCAGTGGACCACCTCCTCCACCTTCAGCAATACATAGCGGAACACCTCC
AGCTACATCGACTAATAAATTTTTTGAGCCACCTCCTGGTGTCTCATGGT
TATCTAAAAGAAGCAATATGTTTCAACCGACCAAAAGAGAACCCCCTGCA
CCTGACAATCTAAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTCAAATC
ATGGACCGTTGAAGATGTTTGCGATTGGCTGAAAGACATTTCTCTGGAAG
AATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTG
GAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGATGCAGAGTG
AACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCT
TCAGTAAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTG
TGGACTACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTC
CTCCTCCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATG
CGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCA
ACTTCTGCCTTCAGTAATACACTGTGGACTACCACCTCCTCCTCCTTCAG
TAATACGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGCAGAGTGAA
CCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCCTTC
AGTAAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAATACACTGTG
GACTACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCACCACCTCCT
CCTCCTTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCG
CGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATC
CTCCGCCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACC
ACATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTT
CAGTAATACGCAGTGGACCACCACACGGTTACACATACGAACGAACATCA
ATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTT
ACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCCCTTAAAGACGCTA
TTAACAGACATCTTGGACAGTAAAACGTATCGGTCACCGAAGGAAGATTA
TGAGGAATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACT
AAAGAAAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCN
AGAGAAGAAGGAAACAAAAGAAAAAGAGGAGGAAACACCGGACGAATTTC
TCTGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGCT
CCTCCTCCTTCTTCTTCAGCAATACGCAGTCGACCACCACATCCTCCTCC
TTCAGCGATGCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATG
GCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACCACCTCATCCTCCG
CCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCACATC
TTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTA
ATACGCAATGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGG
ACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTC
CTCCTTCAGTAATACGCAATGGACCACCACCACCTCCTCCTCCTTCAGCG
ATACGCAGTGGACCACCACCTCCTCCACCTTCAGCAATACGCAATGGACC
ACCACCTCCTCCTTCATTAATACGCAGTGGACCACCCCCTCCTCCAACTT
TAGCAATGCACAGTGAACCACCTCTTCCACCTTCAGCGATACGCAGTGGA
CCACCTCCTCCTCCTCCTTCAGTAATACGCAGTGGAGCATCTACTCCACC
TTCAGCAACACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACGCAGTG
GACCACCACCTCATCCTTCAGCAAAACGCAGTGAACCACCTCCTTCTCGT
TCAGTAACACACAGTGGACCACCACCTCCACCTTCAGCAACACGCAGTGA
ACCACCTCCTTCTCGTTCAGTAACACGCAGTCGACCACCACCTCCTCCTT
CAGTAATACGCAGTGGACCACCTCCTCCACCTTCAGCAATACATAGCGGA
ACACCTCCAGCTACATCGACTAATAAATTTTTTGAGCCACCTCCTGGTGT
CTCATGGTTATCTAAAAGAAGCAATATGTTTCAACCGACCAAAAGAGAAC
CCCCTGCACCTGACAATCTAAAAAGTAGCAGTGGTGATTGGCGAGTAAAA
CTCAAATCATGGACCGTTGAAGATGTTTGCGATTGGCTGAAAGACATTTC
TCTGGAAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTG
AGTTGTTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGAT
GCAGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCAC
CTCCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTA
ATACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACC
ACCACCTCCTCCTCCTTCAGCGATGCAGAGTGAACCACCACTTCCTCCTC
CAGTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAA
CCACCTCAACTTCTGCCTTCAGTAATACACTGTGGACTACCACCTCCTCC
TCCTTCAGTAATACGCAGTCGACCACCACCTCCTCCTTCATCAGCGATGC
AGAGTGAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCT
CCTCCTTCAGTAAAACGTAGTGAACCACCTCAACTTCTGCCTTCAGTAAT
ACACTGTGGACTACCACCTCCTCCTCCTTCAGTAATACGCAGTCGACCAC
CACCTCCTCCTCCTTCAGCAATGCAGAGTGAACCACCACTTCCTCCTCCA
GTAATGCGCGATGGCCCACCACCTCCTCCTTCAGTAAAACGTAGTGAACC
ACCTCATCCTCCGCCTTCAGTAATACACTATGGACCACCACCTCCTCCTC
CTTCAGTAATACGCAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGT
GGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCC
TCCTCCTTCAGTAATACGCAGTGGACCACCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007053	XLOC_007053	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012575-exon-sc0000145-1575043694:482961..484179	TCONS_00012575-exon-sc0000145-1575043694:482961..484179	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1575043694:481551..482750	TCONS_00012575-exon-sc0000145-1575043694:481551..482750	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1575043694:480987..481211	TCONS_00012575-exon-sc0000145-1575043694:480987..481211	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1575043694:480051..480397	TCONS_00012575-exon-sc0000145-1575043694:480051..480397	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1510915933:482961..484179	TCONS_00012575-exon-sc0000145-1510915933:482961..484179	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1510915933:481551..482750	TCONS_00012575-exon-sc0000145-1510915933:481551..482750	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1510915933:480987..481211	TCONS_00012575-exon-sc0000145-1510915933:480987..481211	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1510915933:480051..480397	TCONS_00012575-exon-sc0000145-1510915933:480051..480397	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1491911889:482961..484179	TCONS_00012575-exon-sc0000145-1491911889:482961..484179	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1491911889:481551..482750	TCONS_00012575-exon-sc0000145-1491911889:481551..482750	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1491911889:480987..481211	TCONS_00012575-exon-sc0000145-1491911889:480987..481211	Clytia hemisphaerica	exon
TCONS_00012575-exon-sc0000145-1491911889:480051..480397	TCONS_00012575-exon-sc0000145-1491911889:480051..480397	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012575-protein	TCONS_00012575-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000145	supercontig	sc0000145:480051..484179 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.572964	0.43446	5.1942	7.63582	6.6333	8.88429	7.88691	8.04229	5.16861	7.98844	3.99283	3.36705	4.53669	6.2513	14.6114	9.10175	9.38403	8.60345	2.51117	3.57828	10.6582	7.98734	2.31317	2.63693	0.949348	1.11249

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR003613	Ubox_domain
IPR013083	Znf_RING/FYVE/PHD
IPR013761	SAM/pointed

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Blast

[Close]

BLAST of TCONS_00012575 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 7.937e-27
Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = 1

Query: 2281 WTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIERIGHRRKIMRNXXXXXXXXXXXXXXXXXXXXXPDEFLCPIXXXXXXXXXXXXXXPDEFLCPITQELMTDPVIVADGYTYERTSITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 2784
            W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE +G R K++R                             I   + + K      PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  332 WSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK----------------------------IEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471

The following BLAST results are available for this feature:

BLAST of TCONS_00012575 vs. Swiss-Prot (Human)

BLAST of TCONS_00012575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WSDU1	7.937e-27	39.88	WD repeat, SAM and U-box domain-containing protein...	[more]

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TCONS_00012575 (transcript) - C. hemisphaerica