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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012582 ID=TCONS_00012582|Name=TCONS_00012582|organism=Clytia hemisphaerica|type=transcript|length=2806bp
CATCAATGTTAGGACCATCACCCATGTTAGAACCACCGCCACCACCCATG
CCAGGACAACCACCAGCACCACCATTGCCCCCACCATCTGCGCCATCGCA
CCAAATTGATACTGTAGCTGAAGACGGGGAGCAATCATGTGATATTAACG
AGATTGATGATGACAAGCAGCCATTGTTACCTTAAGAGAagtaattttcg
cgggaactaattttcgatGCGAGAGACTAAATTGGCGGCGCATTTTGCGG
ATCTAATTTTTGCAGTTGATAGCCACTTTTTTCCGAAATTCTTTCTAGgg
gtttttgaggattttaagTAACAATTACATTTCGCGGAACCAGATTTTCG
CGGTagaaaaacgcgaaaattagtatatgtaatcacatgataatgaatgc
aatttttgaattgtaGGAGTTTAATATTTCATTgaattgtttgttttgtt
tttcattgaaTTATATTGTAAACGAGCATAAGCAATTATACTcggtacca
gagtgtatctcacgttttttgcagtgccgtaggaagcattttcatttggC
CGGAGGgggaaaatttgagctctagattgcttgaaaatgcactcataaca
tgcacttaaaagacaattatgacaaattaaaaaagaaaaactttgcattg
ccgtagagggtctgttgtcattaaTTTTTCCGATTTGAGATCTTTCAAAC
CGACCACTACGCTGGAGTGTcagtgagagaggggagacgacgaAAGACTA
AACTAGAACTAAACTAGAAACAAGGTTAGAATGGTGGAAAAATGGAAACT
TCTCAGACCTTCTCGTGGAAGGAAAATTCATACAGAAAAAGCTTGCAGAA
TCAAAGCGTAAACCGACAACTGACAATGCAAAAGCTTTTTCAAACCTTAT
GATGCAAGGAAAAGTAAATGCTGCGCTTAAACTGCTTGCAAAAGATGAAA
TTGGAGTCCATAAAATAAATGAACGGGTCATGAATGAACTGAAAGCCAAA
CACCCTGAACCAGCAGAGATATCAGACGAGACCCTGTATCACGGTCCTAT
CAACCGAGNCCCTGAACCAGCAGAAATATCAGACGAGACCCTGTATCACG
GTCCTATCAACCGAGTTCTTCCTTCATTCTTTGATGATATCGATGAAAAC
ATGATTTTTAAGGCAATGACTTTAACAAAAGGGGCGGGAGGCCCCTCCCA
AATGGATGCCGACCTGTACCGTCATATTTTAACtagtaaaaagtttaaaa
aggaaaataaagaactaaGAGAGCAAATTGCCAAGCTAGCCAAACTATTA
GCTACAGAATGCGTTGACCCATCAACGCTTGAGACATATGTTGCATGTCG
TTTAATCCCTTTGGATAAAAACCCTGGTGTAAGACCCATAGGAGTAGGAG
AGATACTTAGAAGAGTAGTTGGGAAATGTATCGGATgggttttgaaaaat
gatatcCAAACCAGCGCTGGTCCACTTCAAGTTGCAACAGGTCTTCAATC
AGGTGCTGAAGCAGCTATACACGCAATGAAAGAGATCTTCGATTCAGATG
AGACTGAAGCTATAATTCTTGTTGATGCCAGTAATGCGTTTAATTCACTA
AATAGGAAAGGAGCATTACATAATGTCAGGATAATGTGTCCCCAATTCTC
ATGTATATTAACAAATATGTATCGAGTATCAGTTCGCATGATCGTGCTTG
GAAGTAGAGATATTCTGTCAGTTGAGGCGACAATCTTGCAATGTCATTTT
ATGCCCTGGGTATCACTCCCATTATCAATTTTCTGAGggacaaaaaaaag
aaagtgaaaaacgTTTCTCTTGCTGATGATATTACAGGAGCTGGAAAACT
TTCAGATTTAAAGTTATGGTGGGAGCTACTGATTGAGGAAGGCAAGAAAT
ATGGATATTTTGTTAACGAGAGCAAAAGTTGGTTGATTGTGAAGGAGAGA
GAAAAGATAGAAAGTGCCAAAGAGATATTTCATGACTCAGGAATCCAATT
CACAACCGAAGGAAAGAGGCACTTAGGAGCAGCACTAGGAAGTCAAGGAT
TTCGGGAAACTTATGCAAAGGAGAAAGTAAAACGTTGGTGTGAAGAACTC
GAACAGCTGAGTGAATTCGCTAGAACCCAACCGCATGCCGCATACGCTGC
GCTATGTCATGGTGAGCTGCATAAATTTACATACTTTTTGAGAACAATAC
CAGGAATGAAGGAATACATCAAACCCTTGGATGAAATTATTGCAGAGAAG
TTTATTCCTAACCTATTAGACTCAATCATTACAGAACAAGACCGAGAACT
TTTCTCATTACCGGTTAAGAACGGAGGTTTAGGAATTCCTATCCTTGCAG
AATCTTGCGATCTTCACATTAATCATTCAAAAGCCATCTCTGGCCCACTC
CAAGCAGTCATTGTGAACCAAAGCATTGACCTACCAAACATGGAGACTGT
GAAAAGGATTAAGAATGAAAAGAAGCAAGAGAAAGTACAACTGATAAAGG
ATAAAGCATCAGCCATTGACCAAACCTTATCACCATCCATGAAAAAAGCC
GTTGAAGACACAAGACTACCAGGAGCATCGTCATGGCTAACTGTTTTACC
TCTAAAGGACTACGGTTTCTCTCTAAACAAAGGAGAATTCAGAGATGCAG
TCAGGCTGAGANTATCACCATCCATGAAAAAAGCAGTTGAAGACACAAGA
CTACCAGGAGCATCGTCATGGCTAACTGTTTTACCTCTAAAGGACTACGG
TTTCTCTCTAAACAAAGGAGAATTCAGAGATGCAGTCAGGCTGAGATATA
ACCGAG Run BLAST on NCBI protein sequence of TCONS_00012582-protein >TCONS_00012582-protein ID=TCONS_00012582-protein|Name=TCONS_00012582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MSFYALGITPIINFLRDKKKKVKNVSLADDITGAGKLSDLKLWWELLIEE
GKKYGYFVNESKSWLIVKEREKIESAKEIFHDSGIQFTTEGKRHLGAALG
SQGFRETYAKEKVKRWCEELEQLSEFARTQPHAAYAALCHGELHKFTYFL
RTIPGMKEYIKPLDEIIAEKFIPNLLDSIITEQDRELFSLPVKNGGLGIP
ILAESCDLHINHSKAISGPLQAVIVNQSIDLPNMETVKRIKNEKKQEKVQ
LIKDKASAIDQTLSPSMKKAVEDTRLPGASSWLTVLPLKDYGFSLNKGEF
RDAVRLRXSPSMKKAVEDTRLPGASSWLTVLPLKDYGFSLNKGEFRDAVR
LRYNR Run BLAST on NCBI transcript from alignment at sc0000145:153960..156765 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012582 ID=TCONS_00012582|Name=TCONS_00012582|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at sc0000145:153960..156765 (Clytia hemisphaerica)
CTCGGTTATATCTCAGCCTGACTGCATCTCTGAATTCTCCTTTGTTTAGA
GAGAAACCGTAGTCCTTTAGAGGTAAAACAGTTAGCCATGACGATGCTCC
TGGTAGTCTTGTGTCTTCAACTGCTTTTTTCATGGATGGTGATANTCTCA
GCCTGACTGCATCTCTGAATTCTCCTTTGTTTAGAGAGAAACCGTAGTCC
TTTAGAGGTAAAACAGTTAGCCATGACGATGCTCCTGGTAGTCTTGTGTC
TTCAACGGCTTTTTTCATGGATGGTGATAAGGTTTGGTCAATGGCTGATG
CTTTATCCTTTATCAGTTGTACTTTCTCTTGCTTCTTTTCATTCTTAATC
CTTTTCACAGTCTCCATGTTTGGTAGGTCAATGCTTTGGTTCACAATGAC
TGCTTGGAGTGGGCCAGAGATGGCTTTTGAATGATTAATGTGAAGATCGC
AAGATTCTGCAAGGATAGGAATTCCTAAACCTCCGTTCTTAACCGGTAAT
GAGAAAAGTTCTCGGTCTTGTTCTGTAATGATTGAGTCTAATAGGTTAGG
AATAAACTTCTCTGCAATAATTTCATCCAAGGGTTTGATGTATTCCTTCA
TTCCTGGTATTGTTCTCAAAAAGTATGTAAATTTATGCAGCTCACCATGA
CATAGCGCAGCGTATGCGGCATGCGGTTGGGTTCTAGCGAATTCACTCAG
CTGTTCGAGTTCTTCACACCAACGTTTTACTTTCTCCTTTGCATAAGTTT
CCCGAAATCCTTGACTTCCTAGTGCTGCTCCTAAGTGCCTCTTTCCTTCG
GTTGTGAATTGGATTCCTGAGTCATGAAATATCTCTTTGGCACTTTCTAT
CTTTTCTCTCTCCTTCACAATCAACCAACTTTTGCTCTCGTTAACAAAAT
ATCCATATTTCTTGCCTTCCTCAATCAGTAGCTCCCACCATAACTTTAAA
TCTGAAAGTTTTCCAGCTCCTGTAATATCATCAGCAAGAGAAAcgttttt
cactttcttttttttgtccCTCAGAAAATTGATAATGGGAGTGATACCCA
GGGCATAAAATGACATTGCAAGATTGTCGCCTCAACTGACAGAATATCTC
TACTTCCAAGCACGATCATGCGAACTGATACTCGATACATATTTGTTAAT
ATACATGAGAATTGGGGACACATTATCCTGACATTATGTAATGCTCCTTT
CCTATTTAGTGAATTAAACGCATTACTGGCATCAACAAGAATTATAGCTT
CAGTCTCATCTGAATCGAAGATCTCTTTCATTGCGTGTATAGCTGCTTCA
GCACCTGATTGAAGACCTGTTGCAACTTGAAGTGGACCAGCGCTGGTTTG
gatatcatttttcaaaacccATCCGATACATTTCCCAACTACTCTTCTAA
GTATCTCTCCTACTCCTATGGGTCTTACACCAGGGTTTTTATCCAAAGGG
ATTAAACGACATGCAACATATGTCTCAAGCGTTGATGGGTCAACGCATTC
TGTAGCTAATAGTTTGGCTAGCTTGGCAATTTGCTCTCttagttctttat
tttcctttttaaactttttactaGTTAAAATATGACGGTACAGGTCGGCA
TCCATTTGGGAGGGGCCTCCCGCCCCTTTTGTTAAAGTCATTGCCTTAAA
AATCATGTTTTCATCGATATCATCAAAGAATGAAGGAAGAACTCGGTTGA
TAGGACCGTGATACAGGGTCTCGTCTGATATTTCTGCTGGTTCAGGGNCT
CGGTTGATAGGACCGTGATACAGGGTCTCGTCTGATATCTCTGCTGGTTC
AGGGTGTTTGGCTTTCAGTTCATTCATGACCCGTTCATTTATTTTATGGA
CTCCAATTTCATCTTTTGCAAGCAGTTTAAGCGCAGCATTTACTTTTCCT
TGCATCATAAGGTTTGAAAAAGCTTTTGCATTGTCAGTTGTCGGTTTACG
CTTTGATTCTGCAAGCTTTTTCTGTATGAATTTTCCTTCCACGAGAAGGT
CTGAGAAGTTTCCATTTTTCCACCATTCTAACCTTGTTTCTAGTTTAGTT
CTAGTTTAGTCTTtcgtcgtctcccctctctcactgACACTCCAGCGTAG
TGGTCGGTTTGAAAGATCTCAAATCGGAAAAAttaatgacaacagaccct
ctacggcaatgcaaagtttttcttttttaatttgtcataattgtctttta
agtgcatgttatgagtgcattttcaagcaatctagagctcaaattttccc
CCTCCGGccaaatgaaaatgcttcctacggcactgcaaaaaacgtgagat
acactctggtaccgAGTATAATTGCTTATGCTCGTTTACAATATAAttca
atgaaaaacaaaacaaacaattcAATGAAATATTAAACTCCtacaattca
aaaattgcattcattatcatgtgattacatatactaattttcgcgttttt
ctACCGCGAAAATCTGGTTCCGCGAAATGTAATTGTTActtaaaatcctc
aaaaacccCTAGAAAGAATTTCGGAAAAAAGTGGCTATCAACTGCAAAAA
TTAGATCCGCAAAATGCGCCGCCAATTTAGTCTCTCGCatcgaaaattag
ttcccgcgaaaattactTCTCTTAAGGTAACAATGGCTGCTTGTCATCAT
CAATCTCGTTAATATCACATGATTGCTCCCCGTCTTCAGCTACAGTATCA
ATTTGGTGCGATGGCGCAGATGGTGGGGGCAATGGTGGTGCTGGTGGTTG
TCCTGGCATGGGTGGTGGCGGTGGTTCTAACATGGGTGATGGTCCTAACA
TTGATG Coding sequence (CDS) from alignment at sc0000145:153960..156765 >TCONS_00012582 ID=TCONS_00012582|Name=TCONS_00012582|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000145:153960..156765 (Clytia hemisphaerica)
TCGGTTATATCTCAGCCTGACTGCATCTCTGAATTCTCCTTTGTTTAGAG
AGAAACCGTAGTCCTTTAGAGGTAAAACAGTTAGCCATGACGATGCTCCT
GGTAGTCTTGTGTCTTCAACTGCTTTTTTCATGGATGGTGATANTCTCAG
CCTGACTGCATCTCTGAATTCTCCTTTGTTTAGAGAGAAACCGTAGTCCT
TTAGAGGTAAAACAGTTAGCCATGACGATGCTCCTGGTAGTCTTGTGTCT
TCAACGGCTTTTTTCATGGATGGTGATAAGGTTTGGTCAATGGCTGATGC
TTTATCCTTTATCAGTTGTACTTTCTCTTGCTTCTTTTCATTCTTAATCC
TTTTCACAGTCTCCATGTTTGGTAGGTCAATGCTTTGGTTCACAATGACT
GCTTGGAGTGGGCCAGAGATGGCTTTTGAATGATTAATGTGAAGATCGCA
AGATTCTGCAAGGATAGGAATTCCTAAACCTCCGTTCTTAACCGGTAATG
AGAAAAGTTCTCGGTCTTGTTCTGTAATGATTGAGTCTAATAGGTTAGGA
ATAAACTTCTCTGCAATAATTTCATCCAAGGGTTTGATGTATTCCTTCAT
TCCTGGTATTGTTCTCAAAAAGTATGTAAATTTATGCAGCTCACCATGAC
ATAGCGCAGCGTATGCGGCATGCGGTTGGGTTCTAGCGAATTCACTCAGC
TGTTCGAGTTCTTCACACCAACGTTTTACTTTCTCCTTTGCATAAGTTTC
CCGAAATCCTTGACTTCCTAGTGCTGCTCCTAAGTGCCTCTTTCCTTCGG
TTGTGAATTGGATTCCTGAGTCATGAAATATCTCTTTGGCACTTTCTATC
TTTTCTCTCTCCTTCACAATCAACCAACTTTTGCTCTCGTTAACAAAATA
TCCATATTTCTTGCCTTCCTCAATCAGTAGCTCCCACCATAACTTTAAAT
CTGAAAGTTTTCCAGCTCCTGTAATATCATCAGCAAGAGAAAcgtttttc
actttcttttttttgtccCTCAGAAAATTGATAATGGGAGTGATACCCAG
GGCATAAAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012582-exon-sc0000145-1491911889:153960..156765 | TCONS_00012582-exon-sc0000145-1491911889:153960..156765 | Clytia hemisphaerica | exon |
| TCONS_00012582-exon-sc0000145-1510915933:153960..156765 | TCONS_00012582-exon-sc0000145-1510915933:153960..156765 | Clytia hemisphaerica | exon |
| TCONS_00012582-exon-sc0000145-1575043694:153960..156765 | TCONS_00012582-exon-sc0000145-1575043694:153960..156765 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:153960..156765 . |
Blast
The following BLAST results are available for this feature:
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