TCONS_00012594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012594
Unique NameTCONS_00012594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012594 ID=TCONS_00012594|Name=TCONS_00012594|organism=Clytia hemisphaerica|type=transcript|length=460bp
ATCAGCAACGCTGCTTGCACTGTTTCGAGATTTTGCGTGTATTCACACTA
AAAGTTTCAAGCTACaagaaaaagctgaaaagtatCAAGTCGTgccactt
ctatagaaagaaagttcgtgcgtgtgtttcactaaatttgcaaaaacGAA
AAGGAAAACCCAAACATGGAAGCGaccaaaaaacaaacaaaatacgATGA
AGGAGAAAACAACCAAGATTTcgaaaaggagaaagaaaaaacaaacggAG
AAGACATTGAACCAGCTTCAAAGGGTGTGGTTTTCTTATTCTGTTTTATG
TTATTCACTAAAGGACTCACAGCGTGTATTTTCCGGTCCACAAATTATTT
CTTCATTCTCCACATCTTGGATGGGAACGTGAAAACAGCAAATTATGCTC
TTACAACTTTGTATACTGTTGAAGCTATTGTGAATTTTATTGGTGTCTTT
GCGTGCGGAG
Run BLAST on NCBI

transcript from alignment at sc0000145:503787..504246

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012594 ID=TCONS_00012594|Name=TCONS_00012594|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000145:503787..504246 (Clytia hemisphaerica)
CTCCGCACGCAAAGACACCAATAAAATTCACAATAGCTTCAACAGTATAC
AAAGTTGTAAGAGCATAATTTGCTGTTTTCACGTTCCCATCCAAGATGTG
GAGAATGAAGAAATAATTTGTGGACCGGAAAATACACGCTGTGAGTCCTT
TAGTGAATAACATAAAACAGAATAAGAAAACCACACCCTTTGAAGCTGGT
TCAATGTCTTCTccgtttgttttttctttctccttttcgAAATCTTGGTT
GTTTTCTCCTTCATcgtattttgtttgttttttggtCGCTTCCATGTTTG
GGTTTTCCTTTTCgtttttgcaaatttagtgaaacacacgcacgaacttt
ctttctatagaagtggcACGACTTGatacttttcagctttttcttGTAGC
TTGAAACTTTTAGTGTGAATACACGCAAAATCTCGAAACAGTGCAAGCAG
CGTTGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007070XLOC_007070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012594-exon-sc0000145-1491911889:503787..504246TCONS_00012594-exon-sc0000145-1491911889:503787..504246Clytia hemisphaericaexon
TCONS_00012594-exon-sc0000145-1510915933:503787..504246TCONS_00012594-exon-sc0000145-1510915933:503787..504246Clytia hemisphaericaexon
TCONS_00012594-exon-sc0000145-1575043694:503787..504246TCONS_00012594-exon-sc0000145-1575043694:503787..504246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:503787..504246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17978	0.960058	0.387184	0.331139	1.22218	0.805124	2.98414	2.73329	0.276366	0.314303	0.143202	0.378898	0	0	0.318229	0.29282	0.106108	0.108757	0	0.157229	0.136661	0.1267	0.527555	0.57881	0	0	0	0.466315	0.844115	0.849035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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