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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012597 ID=TCONS_00012597|Name=TCONS_00012597|organism=Clytia hemisphaerica|type=transcript|length=2064bp
TCAATGAAGATAGATCTTCAACACCTACTACATCATCAACTGGACTGGGA
TGACCAAATTCCAGACAGCCTTCGACCTCTTTGGGAATCCAATTTCGAAA
TGATGAAAGAGATTGGTCAACTTAAATTCAAACGAGCCATCATTCCTGAA
GACGCCGTCAACACAGATATCAATACAATCAACTCAATCAATGGCCTGTG
TTGCAATATACGCCAGATTCCTTCGACAAAATGGAGAATACTCATCCCAA
CTGATATTCGCTCGAACAAGAACGCTCAAAGATCTTACTCAACCAAGAGC
CGAGCTGTATGCTGCCCTCATCAACTGTCACACCGGTGAGATAGTAAGAC
GGTCCATCTCCAAATGGCACCGCTCATCAATCAAGTTAACTGACAGCCAA
ATCGTCCTACACTGGATTGACAATGACGAAAAACCTCTGAAGAAATGGGT
CAGAAGCAGAGTCGTCGAAATTAAACGTTTTACATCCAACGATCAATGGC
ATTACGTCGACACATCAAACATGTTAGCAGACATCGGAACTCGAAGAGGA
TCCAAACTCAACGAAGTCGACAAAGATTCCAAATGGATAAATGGCCACGA
CTGGATGCATCTCGACCAAAACTCATTTCCAATCAAATCAGCCAAGGAGC
TCAAACTAACTGAACGTGAAATGGAAGAGGTGCAGAAAGAAGTCCAAATC
AACATCCATCATGCAGAGTGCCCAACGAAAGAATTCGAAAAGAGGTATAC
GTTTTCAAATTACCTTCTAGATCCAAACTACAGAAGCTTCACCAAAGTCA
CCAGAATCATGGCTTACGTCATCCGCTACTTTAAAAATCTACGTTCAAAG
AAGTACTCAACATCAACTCCAAACATCGTCATCAAAGAAGTGCCACAACT
CACTGACGAGGAAATATCTGCTGCTGAACTATATTACTTCAAGAAGGCAG
CCGATGAAGTACGACACTTTCTTCCTCCAAAGAAATTTGAGCCAATCACC
ACATCCAAGGATGGTATCCTACTCTACAATGGTCGAATTCTACCAAGCAA
CTCGATCACAATTGTTGGTCGATACACAGAAGCAATGTTGGACCTCATTT
CATCAACATTCTGCGTTCCTGTCATCGACAAGAGTTCACCAGTCGCCTTT
AGCATTGCATCAGATATCCACTGGAACCACAAAGACGTGCAACATGCTGG
CATCGAGACAACCTTACGTCACATCATGAAAAAGACTTACATCATTGAAG
GACGCTCACTAGTCAAATTGATCAAAAAGTCATGCCAACGATGCAGATTT
CTCAACAAACGAACAATTGAAGCTGCAATGGGACCTCTACCAGAAGCTTG
CATCACAATCGCTCCTTCGTTCTACAATACGCAATTCGATCTCAGTGGAC
CATACAAAGCCTATTCTCCATTGCACAAGAGATCAACAATCAAAGTATGG
CTTGTCGTCTACTGCTGCTGTGTTACCTCAGCAATCTTCATCAACGTTAT
GGATGATTACTCAAGCACTGCTTTTATCCAATCCTTCACACGATTTGCTT
CAAGATATGGTTTTCCAAACCAAGTCTACTGTGATGAAGGAACTCAACTT
GTTAAAGGATCCAAGGACATGAGATTCAACTTCAAGGACATCCAATCCAA
ACTTCACAAAGATCATCATGTCACCTTCCAAACGTGTCCTGTAGGCGCAC
ATAACATGAATGGAAAAGTGGAACGAAAAATCAAGGAAGTCAACACATCT
TTGGAAAAAACAATCCAAAACGAACGTTTATCAATCCTACAATGGGAGAC
AATCACTGCAATCATTTCAAACTCTATAAATGATTTACCCATTGCTATTG
GAAATGTCATCGATGTGGAGAACATGGACCTTCTCACTCCAAATCGTCTC
CTTCTAGGACGCAACAATGACCGAAGTCCAACAGGTGATTTCATAATCTC
ATCTAATCCAACGAAATTACTGGACCAAAACTCGAAAATCTATGATGCTT
GGTTCGAATCATGGCTACTAAACCACGTTCCCAAGCTCATGTCACAATCA
AAATGGTTCAACCA Run BLAST on NCBI protein sequence of TCONS_00012597-protein >TCONS_00012597-protein ID=TCONS_00012597-protein|Name=TCONS_00012597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp
MACVAIYARFLRQNGEYSSQLIFARTRTLKDLTQPRAELYAALINCHTGE
IVRRSISKWHRSSIKLTDSQIVLHWIDNDEKPLKKWVRSRVVEIKRFTSN
DQWHYVDTSNMLADIGTRRGSKLNEVDKDSKWINGHDWMHLDQNSFPIKS
AKELKLTEREMEEVQKEVQINIHHAECPTKEFEKRYTFSNYLLDPNYRSF
TKVTRIMAYVIRYFKNLRSKKYSTSTPNIVIKEVPQLTDEEISAAELYYF
KKAADEVRHFLPPKKFEPITTSKDGILLYNGRILPSNSITIVGRYTEAML
DLISSTFCVPVIDKSSPVAFSIASDIHWNHKDVQHAGIETTLRHIMKKTY
IIEGRSLVKLIKKSCQRCRFLNKRTIEAAMGPLPEACITIAPSFYNTQFD
LSGPYKAYSPLHKRSTIKVWLVVYCCCVTSAIFINVMDDYSSTAFIQSFT
RFASRYGFPNQVYCDEGTQLVKGSKDMRFNFKDIQSKLHKDHHVTFQTCP
VGAHNMNGKVERKIKEVNTSLEKTIQNERLSILQWETITAIISNSINDLP
IAIGNVIDVENMDLLTPNRLLLGRNNDRSPTGDFIISSNPTKLLDQNSKI
YDAWFESWLLNHVPKLMSQSKWFN Run BLAST on NCBI transcript from alignment at sc0000145:528199..530262 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012597 ID=TCONS_00012597|Name=TCONS_00012597|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at sc0000145:528199..530262 (Clytia hemisphaerica)
TGGTTGAACCATTTTGATTGTGACATGAGCTTGGGAACGTGGTTTAGTAG
CCATGATTCGAACCAAGCATCATAGATTTTCGAGTTTTGGTCCAGTAATT
TCGTTGGATTAGATGAGATTATGAAATCACCTGTTGGACTTCGGTCATTG
TTGCGTCCTAGAAGGAGACGATTTGGAGTGAGAAGGTCCATGTTCTCCAC
ATCGATGACATTTCCAATAGCAATGGGTAAATCATTTATAGAGTTTGAAA
TGATTGCAGTGATTGTCTCCCATTGTAGGATTGATAAACGTTCGTTTTGG
ATTGTTTTTTCCAAAGATGTGTTGACTTCCTTGATTTTTCGTTCCACTTT
TCCATTCATGTTATGTGCGCCTACAGGACACGTTTGGAAGGTGACATGAT
GATCTTTGTGAAGTTTGGATTGGATGTCCTTGAAGTTGAATCTCATGTCC
TTGGATCCTTTAACAAGTTGAGTTCCTTCATCACAGTAGACTTGGTTTGG
AAAACCATATCTTGAAGCAAATCGTGTGAAGGATTGGATAAAAGCAGTGC
TTGAGTAATCATCCATAACGTTGATGAAGATTGCTGAGGTAACACAGCAG
CAGTAGACGACAAGCCATACTTTGATTGTTGATCTCTTGTGCAATGGAGA
ATAGGCTTTGTATGGTCCACTGAGATCGAATTGCGTATTGTAGAACGAAG
GAGCGATTGTGATGCAAGCTTCTGGTAGAGGTCCCATTGCAGCTTCAATT
GTTCGTTTGTTGAGAAATCTGCATCGTTGGCATGACTTTTTGATCAATTT
GACTAGTGAGCGTCCTTCAATGATGTAAGTCTTTTTCATGATGTGACGTA
AGGTTGTCTCGATGCCAGCATGTTGCACGTCTTTGTGGTTCCAGTGGATA
TCTGATGCAATGCTAAAGGCGACTGGTGAACTCTTGTCGATGACAGGAAC
GCAGAATGTTGATGAAATGAGGTCCAACATTGCTTCTGTGTATCGACCAA
CAATTGTGATCGAGTTGCTTGGTAGAATTCGACCATTGTAGAGTAGGATA
CCATCCTTGGATGTGGTGATTGGCTCAAATTTCTTTGGAGGAAGAAAGTG
TCGTACTTCATCGGCTGCCTTCTTGAAGTAATATAGTTCAGCAGCAGATA
TTTCCTCGTCAGTGAGTTGTGGCACTTCTTTGATGACGATGTTTGGAGTT
GATGTTGAGTACTTCTTTGAACGTAGATTTTTAAAGTAGCGGATGACGTA
AGCCATGATTCTGGTGACTTTGGTGAAGCTTCTGTAGTTTGGATCTAGAA
GGTAATTTGAAAACGTATACCTCTTTTCGAATTCTTTCGTTGGGCACTCT
GCATGATGGATGTTGATTTGGACTTCTTTCTGCACCTCTTCCATTTCACG
TTCAGTTAGTTTGAGCTCCTTGGCTGATTTGATTGGAAATGAGTTTTGGT
CGAGATGCATCCAGTCGTGGCCATTTATCCATTTGGAATCTTTGTCGACT
TCGTTGAGTTTGGATCCTCTTCGAGTTCCGATGTCTGCTAACATGTTTGA
TGTGTCGACGTAATGCCATTGATCGTTGGATGTAAAACGTTTAATTTCGA
CGACTCTGCTTCTGACCCATTTCTTCAGAGGTTTTTCGTCATTGTCAATC
CAGTGTAGGACGATTTGGCTGTCAGTTAACTTGATTGATGAGCGGTGCCA
TTTGGAGATGGACCGTCTTACTATCTCACCGGTGTGACAGTTGATGAGGG
CAGCATACAGCTCGGCTCTTGGTTGAGTAAGATCTTTGAGCGTTCTTGTT
CGAGCGAATATCAGTTGGGATGAGTATTCTCCATTTTGTCGAAGGAATCT
GGCGTATATTGCAACACAGGCCATTGATTGAGTTGATTGTATTGATATCT
GTGTTGACGGCGTCTTCAGGAATGATGGCTCGTTTGAATTTAAGTTGACC
AATCTCTTTCATCATTTCGAAATTGGATTCCCAAAGAGGTCGAAGGCTGT
CTGGAATTTGGTCATCCCAGTCCAGTTGATGATGTAGTAGGTGTTGAAGA
TCTATCTTCATTGA Coding sequence (CDS) from alignment at sc0000145:528199..530262 >TCONS_00012597 ID=TCONS_00012597|Name=TCONS_00012597|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000145:528199..530262 (Clytia hemisphaerica)
GTTGAACCATTTTGATTGTGACATGAGCTTGGGAACGTGGTTTAGTAGCC
ATGATTCGAACCAAGCATCATAGATTTTCGAGTTTTGGTCCAGTAATTTC
GTTGGATTAGATGAGATTATGAAATCACCTGTTGGACTTCGGTCATTGTT
GCGTCCTAGAAGGAGACGATTTGGAGTGAGAAGGTCCATGTTCTCCACAT
CGATGACATTTCCAATAGCAATGGGTAAATCATTTATAGAGTTTGAAATG
ATTGCAGTGATTGTCTCCCATTGTAGGATTGATAAACGTTCGTTTTGGAT
TGTTTTTTCCAAAGATGTGTTGACTTCCTTGATTTTTCGTTCCACTTTTC
CATTCATGTTATGTGCGCCTACAGGACACGTTTGGAAGGTGACATGATGA
TCTTTGTGAAGTTTGGATTGGATGTCCTTGAAGTTGAATCTCATGTCCTT
GGATCCTTTAACAAGTTGAGTTCCTTCATCACAGTAGACTTGGTTTGGAA
AACCATATCTTGAAGCAAATCGTGTGAAGGATTGGATAAAAGCAGTGCTT
GAGTAATCATCCATAACGTTGATGAAGATTGCTGAGGTAACACAGCAGCA
GTAGACGACAAGCCATACTTTGATTGTTGATCTCTTGTGCAATGGAGAAT
AGGCTTTGTATGGTCCACTGAGATCGAATTGCGTATTGTAGAACGAAGGA
GCGATTGTGATGCAAGCTTCTGGTAGAGGTCCCATTGCAGCTTCAATTGT
TCGTTTGTTGAGAAATCTGCATCGTTGGCATGACTTTTTGATCAATTTGA
CTAGTGAGCGTCCTTCAATGATGTAAGTCTTTTTCATGATGTGACGTAAG
GTTGTCTCGATGCCAGCATGTTGCACGTCTTTGTGGTTCCAGTGGATATC
TGATGCAATGCTAAAGGCGACTGGTGAACTCTTGTCGATGACAGGAACGC
AGAATGTTGATGAAATGAGGTCCAACATTGCTTCTGTGTATCGACCAACA
ATTGTGATCGAGTTGCTTGGTAGAATTCGACCATTGTAGAGTAGGATACC
ATCCTTGGATGTGGTGATTGGCTCAAATTTCTTTGGAGGAAGAAAGTGTC
GTACTTCATCGGCTGCCTTCTTGAAGTAATATAGTTCAGCAGCAGATATT
TCCTCGTCAGTGAGTTGTGGCACTTCTTTGATGACGATGTTTGGAGTTGA
TGTTGAGTACTTCTTTGAACGTAGATTTTTAAAGTAGCGGATGACGTAAG
CCATGATTCTGGTGACTTTGGTGAAGCTTCTGTAGTTTGGATCTAGAAGG
TAATTTGAAAACGTATACCTCTTTTCGAATTCTTTCGTTGGGCACTCTGC
ATGATGGATGTTGATTTGGACTTCTTTCTGCACCTCTTCCATTTCACGTT
CAGTTAGTTTGAGCTCCTTGGCTGATTTGATTGGAAATGAGTTTTGGTCG
AGATGCATCCAGTCGTGGCCATTTATCCATTTGGAATCTTTGTCGACTTC
GTTGAGTTTGGATCCTCTTCGAGTTCCGATGTCTGCTAACATGTTTGATG
TGTCGACGTAATGCCATTGATCGTTGGATGTAAAACGTTTAATTTCGACG
ACTCTGCTTCTGACCCATTTCTTCAGAGGTTTTTCGTCATTGTCAATCCA
GTGTAGGACGATTTGGCTGTCAGTTAACTTGATTGATGAGCGGTGCCATT
TGGAGATGGACCGTCTTACTATCTCACCGGTGTGACAGTTGATGAGGGCA
GCATACAGCTCGGCTCTTGGTTGAGTAAGATCTTTGAGCGTTCTTGTTCG
AGCGAATATCAGTTGGGATGAGTATTCTCCATTTTGTCGAAGGAATCTGG
CGTATATTGCAACACAGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012597-exon-sc0000145-1491911889:528199..530262 | TCONS_00012597-exon-sc0000145-1491911889:528199..530262 | Clytia hemisphaerica | exon |
| TCONS_00012597-exon-sc0000145-1510915933:528199..530262 | TCONS_00012597-exon-sc0000145-1510915933:528199..530262 | Clytia hemisphaerica | exon |
| TCONS_00012597-exon-sc0000145-1575043694:528199..530262 | TCONS_00012597-exon-sc0000145-1575043694:528199..530262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:528199..530262 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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