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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012604 ID=TCONS_00012604|Name=TCONS_00012604|organism=Clytia hemisphaerica|type=transcript|length=1894bp
CAACAAGGAAGGAGAATTCGACTTGAGAATCACTTGTTGGGATCTTTATg
tggattgttattgttttctCTGTCGGGAATCAAATactttttaattagtt
tttcaaATCCCTTTCTATCGAGTTGGTCCAAAAGAAATAATGGATTTTGA
TTTTAGgATTCACGGTTGCAAGTGTTCAGGATGTGATGTGTTTATTTCAC
CGAACGAGTTGGTGATGAAAGCTTTGCAGAACGTTTACCACGTGGACTGT
TTCAAATGTTCTGAATGTGGTGACAAGTTAGAGAAGGGAGATGAATTTAT
ACTGAAAGATAGCAAGTTGTATTGCAGTGCTGATTTTAATGTGGCTGACC
CCAAATTTGACAttggTGACGTTTTTGACAGTGACGATTACGATAGTATG
TCAACCATCAGTGCAGCAAGTCCCAACGGACAAGATAAACTACGGAACAG
TCAAAGTAATTGTAAACGACCAAGAACCATTCTGACGTCACAACaacgtg
aagattttaaagcAGCTTTTGAGCTTACACCGAAACCGTGTCGTAAAGTG
CGCGAACAACTTTCTAATGAAACTGGACTCAGTGTTCGTGTGGTCCAAGT
ATGGTTTCAAAATCAACGAGCCAAGttgaagaagattcaaaagaaaacag
ATGGAACAACCGAACCGGCAAccgaaaaaattaagaaaacaaTTCAAGGA
AAGGTTACCAAAAAGAAACGCTCTAAATCAATATCATCGGTGAAATCTGA
ATCATCGGCTGGTTCAAGTGAATACAACATAAACACCAACATTAAAACAG
AAACAAGTGAATCCTTCCAATCCATCCTAGATAGTTACAGCACCATGCAT
CAAATGTTGACTGACACTTCACCGAAAGATATGGATACAAACAACAACAC
TATCACGATCAACACAACAAATTNACAGCACCATGCATCAGATGTTGACT
GACACTTCACCGAAAGATATGGATACAAACAACAACACTATCACGATCAA
CACAACAAACTCAAGTCTTCTCAGTTGTGGTAGTAGTGATATCAGCTCCG
GCTCATCAATGAACAATAGTCCTAACCTAGCGTACGAGCAAGAACACTCA
CCCAATGATTACCCTGGTATGCGGCCGCTCGTCAATCCATTCGCGCGTAT
GCCGAGCGACCTCTTACTACAGACGGCTAGTAACACATACAACACATCAA
ACAACGCGGATAGCATGTTTGACAACACCTTCCCTGTCGCTTCTACAACT
CATAACTCAACTACAACATCTTCATCTAGTCATTTTCAAATGATGCCACA
CCTTATGAACTCTTTTGtgtaaatatgaaaaatatcgTTCAAATAATGAT
CATGTACCGTGGATGGCTTAAGCTTATTTATTTCTCATTAAACTTTccta
tgcaccattgcaatgtcttccacggacccaccagctgattggttgaaagt
gacgtattgaatGACTGATGTCATGTCAGAAGATATTGCAATTGTGCATA
TCATTAATTGCCGCTTTACAACAGGTGGGTACAGGTCAGTCCCAGTCCCA
GTCCCAAGGCTGTTGTGTGTTGTCTTCGCTTCGTTGTCTTTGTACGCAGC
AAAAAATACTATTGCTGGTGCGGTATGGCctaaaaaaacaacggaaagaT
TCTCAAATGCGCCAGAAATGTTTCCTCGGGAATGAGTAAGTTTAGCCATC
CTAGCACGGTATGTCTTAGAACGATGTTATGTATTTTTTAGCCCCCAATT
ATTTTTGACTTGGGTTACTACTATTGAGATTTTGAATTTCACAAATGTTT
TAACACTAGAAACTATTTTTTTGTCTTCTGTTTATTcgaagaaatatatt
ttttattggaCTCATGTGATCCGATGAACTTAATAATTTTGTGG Run BLAST on NCBI transcript from alignment at sc0000146:31772..38050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012604 ID=TCONS_00012604|Name=TCONS_00012604|organism=Clytia hemisphaerica|type=transcript|length=6279bp|location=Sequence derived from alignment at sc0000146:31772..38050+ (Clytia hemisphaerica)
CAACAAGGAAGGAGAATTCGACTTGAGAATCACTTGTTGGGATCTTTATg
tggattgttattgttttctCTGTCGGGAATCAAATactttttaattagtt
tttcaaATCCCTTTCTATCGAGTTGGTCCAAAAGAAATAATGGATTTTGA
TTTTAGGTgattaataaatattttaatacttattattttgtgattttcca
attttttttttttttcaaaacaaatttattttttggataGGTTACATTAC
ATTGATTTCGTGAAGGAAACgcgaaaaagaaattatttaaaattagattt
ttcttttcaacgaGGAGGTTCTTGCAAAGCATCATCAAAGGTAGTGGACT
ATCTTTGAAGAAGGATAGATGACACGACCTCATGCTCATCCCAAATCTTA
TAAAACGTTGTCACATCCTTTAAGGGAAAAACACCGAAGCCAGACCGCCA
ACGGTTCGCActgaatgagaaaaaaattacccGCGAGAAAAAAGAATTAC
TCAAATAGgaagaaaaaaagggaaaaggcggaaaacaaattttccttttt
tcacatttttttttccacctggatcctatactttttgttttgttttcctc
AAAATTCGAACCCTACCCTGAAGGGAACAAAAACGAAAAACAGATGTATG
TCCTTTTCTTTATTCATCTTATTCTTTACCTTTTCAAACGGAATCCCTTG
TGTTGTTTTTATAAACAGACGTTCCACAGGACCTTCAAAATTTTGTCTTC
TACCCCTGAATTAAGTGTGACTGAGCTTGCTAACAAGTGTCTCAAACATT
AATCTTTGAAGGGTACGCTTTCCGCCTGAGTATCTATTACGAACTATCTT
TTAACACCTAGGGATAAATTTTGCTTGTTGATAGAACAAATTAGTTGAAT
TAAAAGCAAGTTAAAAATTATCAACCTGGCGAAAGTTTGTATATACATTT
ATCATTGTTCTGCTCTCTTTGAACTAAGAGAGGGGGAAGATCTTTATTTT
CGACGACTGGTCGATTCTTTTTGCAGTTCCTCGTGATACTCTTGTTGGGG
TAGTGGGAAATTTTTATCTAACCATCGAAGAACAAACATATATTTAGCAA
TGATGACTAAGTAAGTTTTTTATAGCTTTCTTCGCATGGGAAAAAtcgat
tttctaaaatcaataTCAACGATTTTGTCGTGTACCGTTGCAGTTTTACA
AGAGTTTTTCGTGTTTAAAATCGGTTTGGTTTGTGTTTAGAGATCTGGTC
CGGCTTTTGGATTTTTGGCAATTAAAATGTAGGTTTTCTTACAGGAAACC
CAGGGTGGGCAATTAGATGTTTTGCGGAAATATTACTTACCCGTCTATGT
ATATGTTGTGGCAAGATCTTGTCTGGTTTAGTATTTGCTAAATTTGGTCT
CGTTCCATAAACTGTACTTTAATAAGGTCCGTTCTGTCCATGCTGTCCGC
TTTTACTCtttctgcctattgttatatcacgctgatataagcaaaaaaat
atttttcttttcctctttctgaccaatcttgctccacatccgtgtcaacc
CAATGTTAATTAAGCtcgtaaattaaaattgatgagtaagcaaacgatat
cgcTCTTTATTAAGTACAGTACTTGAGAGTGGTTTTCTTCCATACACAGT
AGCAGCAAAAATAGTGCACACATAAAGCGATTTGACCTTCAGTACGATTT
CATATTTTCACtaataaatacaattttttcatgttttttttaccattttt
caggATTCACGGTTGCAAGTGTTCAGGATGTGATGTGTTTATTTCACCGA
ACGAGTTGGTGATGAAAGCTTTGCAGAACGTTTACCACGTGGACTGTTTC
AAATGTTCTGAATGTGGTGACAAGTTAGAGAAGGGAGATGAATTTATACT
GAAAGATAGCAAGTTGTATTGCAGTGCTGATTTTAATGTGGCTGACCCCA
AATTTGACAGTAAGTCCCACAGAGTCCCATTATTATAAGTTCTAAACTAT
ATTCGCCTTAAGTGCGTACTCTTTCTTGCCACTGTGTACTCGTTCTTGAA
TCGATTTAATTACGTTCCCCGCATAAAAGCAAAAAGCAGTGCACATTTAA
AATGGAAGGACTTTAAATATCGTTTCGTTGACGATACACGTGATAAGAAG
GTATTTAggtagccaaaatattaagaataagttaagaacattttatggct
TTATAAGCTCTAACTAATACAccgaatttcttaggaaattgcacaaaaat
aagaacatgttcagaatatttttaagcttaaaactcataaagttaagaac
atcggaaggcttagaaaatgtttggaaaatggAAAGTAAGTTATCCTAAT
AGGGTCTACTGAATTCTGAAAAACTGAAGGGAGTTTTCATTGTGCcttaa
atttcgaattttggtatTGACAGTTTTTGCTTCAATATGGCATCATCAGT
AACCGCTGACATCTATTTTGAGTTGAGATTGCGACAAAAGGGTTTGATTT
GAGCTACCCATAAGATATaagcttacacgtttttttttttataagaacgt
caaaaattttcgaagccttcggatgttcttagttttttggatttgaagcc
taaaaatgttcttaaaatgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaagccttatgttctta
tatagtttgttcttataaaaaaaaaacgtgtatcagatTTCATGCAAAAG
GCAAGGTCTCTTTTCTCTGTCTGATACCGATCTTTGTAAGTCAACTCGTG
TTCATGATCTATTTATTGATAAAACTAAAACTTTGGAAGCAATTTCTGTC
AACgaaatagtttatttttctcCTCCGAGAGATTATAGTGATATATTTAC
TTTGAAACAACTTTTGCATGTTTTAATGATAGAAACGAATATTTTCACTG
CGAGGTTgttcaaaatgtacaaaattgaATGTAGTTTTTCTTCTATGACA
GCAAAGTTAGCTTTtattcaattcatgatatgcgccattgcaatgtcttc
tgacattacctCACGGACCcgatagctgattggttgtacgtgacgtaaaa
tcagtcacttgcaaccaatcagctattgggtccatgaaatccattgcaat
ggtgcatataatGAATACACCTATCCACCTTCAAATTCGTGTAGGGAGCC
TGGGTTCCAGTTTATCAGGAAGATGACGTCAAATTATCTGAAATCATTGA
CATTGCGTTAACATAAAAGGACAAATTTCGACGTCATTTCCTTGTTAATT
CATTACCAGACCCCTCAAAGGCCGACCGCACCGTTAAGGTTTGATATGTt
aatattatttcaaaatattacaaatttttatttttcagttggTGACGTTT
TTGACAGTGACGATTACGATAGTATGTCAACCATCAGTGCAGCAAGTCCC
AACGGACAAGATAAACTACGGAACAGTCAAAGTAATTGTAAACGACCAAG
AACCATTCTGACGTCACAACaacgtgaagattttaaagcAGCTTTTGAGC
TTACACCGAAACCGTGTCGTAAAGTGCGCGAACAACTTTCTAATGAAACT
GGACTCAGTGTTCGTGTGGTCCAAGTATGGTTTCAAAATCAACGAGCCAA
GGtaactattttttttaaatacagttgactctcgctaattcgaactccgA
ACGGGAAATCTTATtttgttcgaataacagagagattcgaattatagaga
gtattttaagagggttttcTCCTTGACGTACTTGAAAcaagtttgaatta
tagaaagattcgaataatagaggttcgaataatCGAGAGTTGACTTCATC
TTTATCGCCAGTTGCTTTAAAGCGTGCACCGTTTTTGATATCGTGTGGAA
TTGTGGAACCCATGTAGCAAAAGAGGATGGAATTTAGTTAAGTTTTAAGG
AAACCCTATTATTATAagcatacagttgacgctctctaattcgacgttct
actattcgataggctcccttattcgatgaaatttaaagtccccgtcaaca
agagactctcataaacgacgtttccttattcgataagctcccttattcga
tgaaattccaattccccttgaagatcgaattagagagcgtcaactgtatt
tgtcCTTATCAGCCGTCGGAAATGCTCGATGATGCAAAGTATCAGCACGA
TTCCAGGAAATTATCTTGATTCACATTaaaagacacccctgtgtcacagg
ccCCCACTGGAAACTTAGAAAAAATACCCtgcaatttcagccccactggg
aaattgacttttatttcatccccgttcaaaattgactttgatttcatccc
tattCAAATTTCAATGTTTCCAAATTGCGCTCCAAAAAACCATGCCTATT
GGAAtctttaaccttggaacaatagaatttctatccccattagagtgtgc
aaagccttaaaatcttcttaacttttttgtcCATCAAAAAAGGTGTAGAC
TCAGGGTCAGGTTAATTTGAATGTAACTGTAATATTAATTTTCgtcaact
tttttattttttagttgaagaagattcaaaagaaaacagATGGAACAACC
GAACCGGCAAccgaaaaaattaagaaaacaaTTCAAGGAAAGGTTACCAA
AAAGAAACGCTCTAAATGTAAGTATAATCTGTTTACCTTACAGGATGTTC
GATAATTTTGAAATCCACTGTCAACTTTCATAAACggcgttctactattc
gatatgctcccttattcgatgaaagttggatttgaaaaatcgaattagag
aacgtcaaCTATACAAGTAAAGTGTGATTAAATTACTCAACATTCGAAGA
GTCAGGTTTGTCAACTTTCTTTGAAGAGTATATTCTAATTATGAACGTAT
TTTCATTCTACAGCAATATCATCGGTGAAATCTGAATCATCGGCTGGTTC
AAGTGAATACAACATAAACACCAACATTAAAACAGAAACAAGTGAATCCT
TCCAATCCATCCTAGATAGTTACAGCACCATGCATCAAATGTTGACTGAC
ACTTCACCGAAAGATATGGATACAAACAACAACACTATCACGATCAACAC
AACAAATTNACAGCACCATGCATCAGATGTTGACTGACACTTCACCGAAA
GATATGGATACAAACAACAACACTATCACGATCAACACAACAAACTCAAG
TCTTCTCAGTTGTGGTAGTAGTGATATCAGCTCCGGCTCATCAATGAACA
ATAGTCCTAACCTAGCGTACGAGCAAGAACACTCACCCAATGATTACCCT
GGTATGCGGCCGCTCGTCAATCCATTCGCGCGTATGCCGAGCGACCTCTT
ACTACAGACGGCTAGTAACACATACAACACATCAAACAACGCGGATAGCA
TGTTTGACAACACCTTCCCTGTCGCTTCTACAACTCATAACTCAACTACA
ACATCTTCATCTAGTCATTTTCAAATGATGCCACACCTTATGAACTCTTT
TGtgtaaatatgaaaaatatcgTTCAAATAATGATCATGTACCGTGGATG
GCTTAAGCTTATTTATTTCTCATTAAACTTTcctatgcaccattgcaatg
tcttccacggacccaccagctgattggttgaaagtgacgtattgaatGAC
TGATGTCATGTCAGAAGATATTGCAATTGTGCATATCATTAATTGCCGCT
TTACAACAGGTGGGTACAGGTCAGTCCCAGTCCCAGTCCCAAGGCTGTTG
TGTGTTGTCTTCGCTTCGTTGTCTTTGTACGCAGCAAAAAATACTATTGC
TGGTGCGGTATGGCctaaaaaaacaacggaaagaTTCTCAAATGCGCCAG
AAATGTTTCCTCGGGAATGAGTAAGTTTAGCCATCCTAGCACGGTATGTC
TTAGAACGATGTTATGTATTTTTTAGCCCCCAATTATTTTTGACTTGGGT
TACTACTATTGAGATTTTGAATTTCACAAATGTTTTAACACTAGAAACTA
TTTTTTTGTCTTCTGTTTATTcgaagaaatatattttttattggaCTCAT
GTGATCCGATGAACTTAATAATTTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012604-exon-sc0000146-1491911889:31772..31927 | TCONS_00012604-exon-sc0000146-1491911889:31772..31927 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1510915933:31772..31927 | TCONS_00012604-exon-sc0000146-1510915933:31772..31927 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1575043694:31772..31927 | TCONS_00012604-exon-sc0000146-1575043694:31772..31927 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1491911889:33525..33730 | TCONS_00012604-exon-sc0000146-1491911889:33525..33730 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1510915933:33525..33730 | TCONS_00012604-exon-sc0000146-1510915933:33525..33730 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1575043694:33525..33730 | TCONS_00012604-exon-sc0000146-1575043694:33525..33730 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1491911889:35360..35622 | TCONS_00012604-exon-sc0000146-1491911889:35360..35622 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1510915933:35360..35622 | TCONS_00012604-exon-sc0000146-1510915933:35360..35622 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1575043694:35360..35622 | TCONS_00012604-exon-sc0000146-1575043694:35360..35622 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1491911889:36536..36638 | TCONS_00012604-exon-sc0000146-1491911889:36536..36638 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1510915933:36536..36638 | TCONS_00012604-exon-sc0000146-1510915933:36536..36638 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1575043694:36536..36638 | TCONS_00012604-exon-sc0000146-1575043694:36536..36638 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1491911889:36885..38050 | TCONS_00012604-exon-sc0000146-1491911889:36885..38050 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1510915933:36885..38050 | TCONS_00012604-exon-sc0000146-1510915933:36885..38050 | Clytia hemisphaerica | exon |
| TCONS_00012604-exon-sc0000146-1575043694:36885..38050 | TCONS_00012604-exon-sc0000146-1575043694:36885..38050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:31772..38050 + |
Blast
BLAST of TCONS_00012604 vs. Swiss-Prot (Human)
Match: LMX1A (LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.420e-44 Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 2
Query: 113 FYRVGPKEIMDFDF-RIHGCKCSGCDVFISPNELVMKALQNVYHVDCFKCSECGDKLEKGDEFILKDSKLYCSADFNVADPKFDI-----GDVFDSDDYDSMSTISAASPNGQDKLRNSQSNCKRPRTILTSQQREDFKAAFELTPKPCRKVREQLSNETGLSVRVVQVWFQNQRAKLKKI 637
FYR K +D+ ++ KC GC I+PNE VM+A ++VYH+ CF C C +L+KGDEF+LK+ +L C D+ + D SDD +S+ + + G + KRPRTILT+QQR FKA+FE++ KPCRKVRE L+ ETGLSVRVVQVWFQNQRAK+KK+
Sbjct: 74 FYR-DKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
The following BLAST results are available for this feature:
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