TCONS_00012605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012605
Unique NameTCONS_00012605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012605 ID=TCONS_00012605|Name=TCONS_00012605|organism=Clytia hemisphaerica|type=transcript|length=1839bp
GTCGATTCTTTTTGCAGTTCCTCGTGATACTCTTGTTGGGGTAGTGGGAA
ATTTTTATCTAACCATCGAAGAACAAACATATATTTAGCAATGATGACTA
AgATTCACGGTTGCAAGTGTTCAGGATGTGATGTGTTTATTTCACCGAAC
GAGTTGGTGATGAAAGCTTTGCAGAACGTTTACCACGTGGACTGTTTCAA
ATGTTCTGAATGTGGTGACAAGTTAGAGAAGGGAGATGAATTTATACTGA
AAGATAGCAAGTTGTATTGCAGTGCTGATTTTAATGTGGCTGACCCCAAA
TTTGACAttggTGACGTTTTTGACAGTGACGATTACGATAGTATGTCAAC
CATCAGTGCAGCAAGTCCCAACGGACAAGATAAACTACGGAACAGTCAAA
GTAATTGTAAACGACCAAGAACCATTCTGACGTCACAACaacgtgaagat
tttaaagcAGCTTTTGAGCTTACACCGAAACCGTGTCGTAAAGTGCGCGA
ACAACTTTCTAATGAAACTGGACTCAGTGTTCGTGTGGTCCAAGTATGGT
TTCAAAATCAACGAGCCAAGttgaagaagattcaaaagaaaacagATGGA
ACAACCGAACCGGCAAccgaaaaaattaagaaaacaaTTCAAGGAAAGGT
TACCAAAAAGAAACGCTCTAAATCAATATCATCGGTGAAATCTGAATCAT
CGGCTGGTTCAAGTGAATACAACATAAACACCAACATTAAAACAGAAACA
AGTGAATCCTTCCAATCCATCCTAGATAGTTACAGCACCATGCATCAAAT
GTTGACTGACACTTCACCGAAAGATATGGATACAAACAACAACACTATCA
CGATCAACACAACAAATTNACAGCACCATGCATCAGATGTTGACTGACAC
TTCACCGAAAGATATGGATACAAACAACAACACTATCACGATCAACACAA
CAAACTCAAGTCTTCTCAGTTGTGGTAGTAGTGATATCAGCTCCGGCTCA
TCAATGAACAATAGTCCTAACCTAGCGTACGAGCAAGAACACTCACCCAA
TGATTACCCTGGTATGCGGCCGCTCGTCAATCCATTCGCGCGTATGCCGA
GCGACCTCTTACTACAGACGGCTAGTAACACATACAACACATCAAACAAC
GCGGATAGCATGTTTGACAACACCTTCCCTGTCGCTTCTACAACTCATAA
CTCAACTACAACATCTTCATCTAGTCATTTTCAAATGATGCCACACCTTA
TGAACTCTTTTGtgtaaatatgaaaaatatcgTTCAAATAATGATCATGT
ACCGTGGATGGCTTAAGCTTATTTATTTCTCATTAAACTTTcctatgcac
cattgcaatgtcttccacggacccaccagctgattggttgaaagtgacgt
attgaatGACTGATGTCATGTCAGAAGATATTGCAATTGTGCATATCATT
AATTGCCGCTTTACAACAGGTGGGTACAGGTCAGTCCCAGTCCCAGTCCC
AAGGCTGTTGTGTGTTGTCTTCGCTTCGTTGTCTTTGTACGCAGCAAAAA
ATACTATTGCTGGTGCGGTATGGCctaaaaaaacaacggaaagaTTCTCA
AATGCGCCAGAAATGTTTCCTCGGGAATGAGTAAGTTTAGCCATCCTAGC
ACGGTATGTCTTAGAACGATGTTATGTATTTTTTAGCCCCCAATTATTTT
TGACTTGGGTTACTACTATTGAGATTTTGAATTTCACAAATGTTTTAACA
CTAGAAACTATTTTTTTGTCTTCTGTTTATTcgaagaaatatatttttta
ttggaCTCATGTGATCCGATGAACTTAATAATTTTGTGG
Run BLAST on NCBI

transcript from alignment at sc0000146:32781..38050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012605 ID=TCONS_00012605|Name=TCONS_00012605|organism=Clytia hemisphaerica|type=transcript|length=5270bp|location=Sequence derived from alignment at sc0000146:32781..38050+ (Clytia hemisphaerica)
GTCGATTCTTTTTGCAGTTCCTCGTGATACTCTTGTTGGGGTAGTGGGAA
ATTTTTATCTAACCATCGAAGAACAAACATATATTTAGCAATGATGACTA
AGTAAGTTTTTTATAGCTTTCTTCGCATGGGAAAAAtcgattttctaaaa
tcaataTCAACGATTTTGTCGTGTACCGTTGCAGTTTTACAAGAGTTTTT
CGTGTTTAAAATCGGTTTGGTTTGTGTTTAGAGATCTGGTCCGGCTTTTG
GATTTTTGGCAATTAAAATGTAGGTTTTCTTACAGGAAACCCAGGGTGGG
CAATTAGATGTTTTGCGGAAATATTACTTACCCGTCTATGTATATGTTGT
GGCAAGATCTTGTCTGGTTTAGTATTTGCTAAATTTGGTCTCGTTCCATA
AACTGTACTTTAATAAGGTCCGTTCTGTCCATGCTGTCCGCTTTTACTCt
ttctgcctattgttatatcacgctgatataagcaaaaaaatatttttctt
ttcctctttctgaccaatcttgctccacatccgtgtcaaccCAATGTTAA
TTAAGCtcgtaaattaaaattgatgagtaagcaaacgatatcgcTCTTTA
TTAAGTACAGTACTTGAGAGTGGTTTTCTTCCATACACAGTAGCAGCAAA
AATAGTGCACACATAAAGCGATTTGACCTTCAGTACGATTTCATATTTTC
ACtaataaatacaattttttcatgttttttttaccatttttcaggATTCA
CGGTTGCAAGTGTTCAGGATGTGATGTGTTTATTTCACCGAACGAGTTGG
TGATGAAAGCTTTGCAGAACGTTTACCACGTGGACTGTTTCAAATGTTCT
GAATGTGGTGACAAGTTAGAGAAGGGAGATGAATTTATACTGAAAGATAG
CAAGTTGTATTGCAGTGCTGATTTTAATGTGGCTGACCCCAAATTTGACA
GTAAGTCCCACAGAGTCCCATTATTATAAGTTCTAAACTATATTCGCCTT
AAGTGCGTACTCTTTCTTGCCACTGTGTACTCGTTCTTGAATCGATTTAA
TTACGTTCCCCGCATAAAAGCAAAAAGCAGTGCACATTTAAAATGGAAGG
ACTTTAAATATCGTTTCGTTGACGATACACGTGATAAGAAGGTATTTAgg
tagccaaaatattaagaataagttaagaacattttatggctTTATAAGCT
CTAACTAATACAccgaatttcttaggaaattgcacaaaaataagaacatg
ttcagaatatttttaagcttaaaactcataaagttaagaacatcggaagg
cttagaaaatgtttggaaaatggAAAGTAAGTTATCCTAATAGGGTCTAC
TGAATTCTGAAAAACTGAAGGGAGTTTTCATTGTGCcttaaatttcgaat
tttggtatTGACAGTTTTTGCTTCAATATGGCATCATCAGTAACCGCTGA
CATCTATTTTGAGTTGAGATTGCGACAAAAGGGTTTGATTTGAGCTACCC
ATAAGATATaagcttacacgtttttttttttataagaacgtcaaaaattt
tcgaagccttcggatgttcttagttttttggatttgaagcctaaaaatgt
tcttaaaatgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNcgaagccttatgttcttatatagtttg
ttcttataaaaaaaaaacgtgtatcagatTTCATGCAAAAGGCAAGGTCT
CTTTTCTCTGTCTGATACCGATCTTTGTAAGTCAACTCGTGTTCATGATC
TATTTATTGATAAAACTAAAACTTTGGAAGCAATTTCTGTCAACgaaata
gtttatttttctcCTCCGAGAGATTATAGTGATATATTTACTTTGAAACA
ACTTTTGCATGTTTTAATGATAGAAACGAATATTTTCACTGCGAGGTTgt
tcaaaatgtacaaaattgaATGTAGTTTTTCTTCTATGACAGCAAAGTTA
GCTTTtattcaattcatgatatgcgccattgcaatgtcttctgacattac
ctCACGGACCcgatagctgattggttgtacgtgacgtaaaatcagtcact
tgcaaccaatcagctattgggtccatgaaatccattgcaatggtgcatat
aatGAATACACCTATCCACCTTCAAATTCGTGTAGGGAGCCTGGGTTCCA
GTTTATCAGGAAGATGACGTCAAATTATCTGAAATCATTGACATTGCGTT
AACATAAAAGGACAAATTTCGACGTCATTTCCTTGTTAATTCATTACCAG
ACCCCTCAAAGGCCGACCGCACCGTTAAGGTTTGATATGTtaatattatt
tcaaaatattacaaatttttatttttcagttggTGACGTTTTTGACAGTG
ACGATTACGATAGTATGTCAACCATCAGTGCAGCAAGTCCCAACGGACAA
GATAAACTACGGAACAGTCAAAGTAATTGTAAACGACCAAGAACCATTCT
GACGTCACAACaacgtgaagattttaaagcAGCTTTTGAGCTTACACCGA
AACCGTGTCGTAAAGTGCGCGAACAACTTTCTAATGAAACTGGACTCAGT
GTTCGTGTGGTCCAAGTATGGTTTCAAAATCAACGAGCCAAGGtaactat
tttttttaaatacagttgactctcgctaattcgaactccgAACGGGAAAT
CTTATtttgttcgaataacagagagattcgaattatagagagtattttaa
gagggttttcTCCTTGACGTACTTGAAAcaagtttgaattatagaaagat
tcgaataatagaggttcgaataatCGAGAGTTGACTTCATCTTTATCGCC
AGTTGCTTTAAAGCGTGCACCGTTTTTGATATCGTGTGGAATTGTGGAAC
CCATGTAGCAAAAGAGGATGGAATTTAGTTAAGTTTTAAGGAAACCCTAT
TATTATAagcatacagttgacgctctctaattcgacgttctactattcga
taggctcccttattcgatgaaatttaaagtccccgtcaacaagagactct
cataaacgacgtttccttattcgataagctcccttattcgatgaaattcc
aattccccttgaagatcgaattagagagcgtcaactgtatttgtcCTTAT
CAGCCGTCGGAAATGCTCGATGATGCAAAGTATCAGCACGATTCCAGGAA
ATTATCTTGATTCACATTaaaagacacccctgtgtcacaggccCCCACTG
GAAACTTAGAAAAAATACCCtgcaatttcagccccactgggaaattgact
tttatttcatccccgttcaaaattgactttgatttcatccctattCAAAT
TTCAATGTTTCCAAATTGCGCTCCAAAAAACCATGCCTATTGGAAtcttt
aaccttggaacaatagaatttctatccccattagagtgtgcaaagcctta
aaatcttcttaacttttttgtcCATCAAAAAAGGTGTAGACTCAGGGTCA
GGTTAATTTGAATGTAACTGTAATATTAATTTTCgtcaacttttttattt
tttagttgaagaagattcaaaagaaaacagATGGAACAACCGAACCGGCA
AccgaaaaaattaagaaaacaaTTCAAGGAAAGGTTACCAAAAAGAAACG
CTCTAAATGTAAGTATAATCTGTTTACCTTACAGGATGTTCGATAATTTT
GAAATCCACTGTCAACTTTCATAAACggcgttctactattcgatatgctc
ccttattcgatgaaagttggatttgaaaaatcgaattagagaacgtcaaC
TATACAAGTAAAGTGTGATTAAATTACTCAACATTCGAAGAGTCAGGTTT
GTCAACTTTCTTTGAAGAGTATATTCTAATTATGAACGTATTTTCATTCT
ACAGCAATATCATCGGTGAAATCTGAATCATCGGCTGGTTCAAGTGAATA
CAACATAAACACCAACATTAAAACAGAAACAAGTGAATCCTTCCAATCCA
TCCTAGATAGTTACAGCACCATGCATCAAATGTTGACTGACACTTCACCG
AAAGATATGGATACAAACAACAACACTATCACGATCAACACAACAAATTN
ACAGCACCATGCATCAGATGTTGACTGACACTTCACCGAAAGATATGGAT
ACAAACAACAACACTATCACGATCAACACAACAAACTCAAGTCTTCTCAG
TTGTGGTAGTAGTGATATCAGCTCCGGCTCATCAATGAACAATAGTCCTA
ACCTAGCGTACGAGCAAGAACACTCACCCAATGATTACCCTGGTATGCGG
CCGCTCGTCAATCCATTCGCGCGTATGCCGAGCGACCTCTTACTACAGAC
GGCTAGTAACACATACAACACATCAAACAACGCGGATAGCATGTTTGACA
ACACCTTCCCTGTCGCTTCTACAACTCATAACTCAACTACAACATCTTCA
TCTAGTCATTTTCAAATGATGCCACACCTTATGAACTCTTTTGtgtaaat
atgaaaaatatcgTTCAAATAATGATCATGTACCGTGGATGGCTTAAGCT
TATTTATTTCTCATTAAACTTTcctatgcaccattgcaatgtcttccacg
gacccaccagctgattggttgaaagtgacgtattgaatGACTGATGTCAT
GTCAGAAGATATTGCAATTGTGCATATCATTAATTGCCGCTTTACAACAG
GTGGGTACAGGTCAGTCCCAGTCCCAGTCCCAAGGCTGTTGTGTGTTGTC
TTCGCTTCGTTGTCTTTGTACGCAGCAAAAAATACTATTGCTGGTGCGGT
ATGGCctaaaaaaacaacggaaagaTTCTCAAATGCGCCAGAAATGTTTC
CTCGGGAATGAGTAAGTTTAGCCATCCTAGCACGGTATGTCTTAGAACGA
TGTTATGTATTTTTTAGCCCCCAATTATTTTTGACTTGGGTTACTACTAT
TGAGATTTTGAATTTCACAAATGTTTTAACACTAGAAACTATTTTTTTGT
CTTCTGTTTATTcgaagaaatatattttttattggaCTCATGTGATCCGA
TGAACTTAATAATTTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007074XLOC_007074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012605-exon-sc0000146-1491911889:32781..32881TCONS_00012605-exon-sc0000146-1491911889:32781..32881Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1510915933:32781..32881TCONS_00012605-exon-sc0000146-1510915933:32781..32881Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1575043694:32781..32881TCONS_00012605-exon-sc0000146-1575043694:32781..32881Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1491911889:33525..33730TCONS_00012605-exon-sc0000146-1491911889:33525..33730Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1510915933:33525..33730TCONS_00012605-exon-sc0000146-1510915933:33525..33730Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1575043694:33525..33730TCONS_00012605-exon-sc0000146-1575043694:33525..33730Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1491911889:35360..35622TCONS_00012605-exon-sc0000146-1491911889:35360..35622Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1510915933:35360..35622TCONS_00012605-exon-sc0000146-1510915933:35360..35622Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1575043694:35360..35622TCONS_00012605-exon-sc0000146-1575043694:35360..35622Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1491911889:36536..36638TCONS_00012605-exon-sc0000146-1491911889:36536..36638Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1510915933:36536..36638TCONS_00012605-exon-sc0000146-1510915933:36536..36638Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1575043694:36536..36638TCONS_00012605-exon-sc0000146-1575043694:36536..36638Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1491911889:36885..38050TCONS_00012605-exon-sc0000146-1491911889:36885..38050Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1510915933:36885..38050TCONS_00012605-exon-sc0000146-1510915933:36885..38050Clytia hemisphaericaexon
TCONS_00012605-exon-sc0000146-1575043694:36885..38050TCONS_00012605-exon-sc0000146-1575043694:36885..38050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:32781..38050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	5.33471e-08	0	0	4.04145e-08	0	0.222413	0	0	2.39755	2.14712	0.0536553	0.809061	0.384461	0.577583	3.91214	4.87659	2.12412	4.35021	0.908742	1.54228	1.0129	2.69321	1.83643e-08	0.000701729	0	0
Blast
[Close]
BLAST of TCONS_00012605 vs. Swiss-Prot (Human)
Match: LMX1A (LIM homeobox transcription factor 1-alpha OS=Homo sapiens GN=LMX1A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.554e-45
Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1 
Query:  100 KIHGCKCSGCDVFISPNELVMKALQNVYHVDCFKCSECGDKLEKGDEFILKDSKLYCSADF-------NVADPKFDIGDVFDSDDYDSMSTISAASPNGQDKLRNSQSNCKRPRTILTSQQREDFKAAFELTPKPCRKVREQLSNETGLSVRVVQVWFQNQRAKLKKI 582
            K+   KC GC   I+PNE VM+A ++VYH+ CF C  C  +L+KGDEF+LK+ +L C  D+       ++  P     D   SDD +S+   +  +  G  +        KRPRTILT+QQR  FKA+FE++ KPCRKVRE L+ ETGLSVRVVQVWFQNQRAK+KK+
Sbjct:   88 KLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPA--ASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
The following BLAST results are available for this feature:
BLAST of TCONS_00012605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMX1A7.554e-4549.40LIM homeobox transcription factor 1-alpha OS=Homo ... [more]
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