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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012609 ID=TCONS_00012609|Name=TCONS_00012609|organism=Clytia hemisphaerica|type=transcript|length=1757bpRun BLAST on NCBI protein sequence of Argininosuccinate synthase >TCONS_00012609-protein ID=TCONS_00012609-protein|Name=Argininosuccinate synthase|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MVQLTHVLGETKQQRELNMTSSDTSVPNKTVVLAYSGGLDTSCILVWLIERun BLAST on NCBI transcript from alignment at sc0000146:84190..99332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012609 ID=TCONS_00012609|Name=TCONS_00012609|organism=Clytia hemisphaerica|type=transcript|length=15143bp|location=Sequence derived from alignment at sc0000146:84190..99332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:84190..99332+ >TCONS_00012609 ID=TCONS_00012609|Name=TCONS_00012609|organism=Clytia hemisphaerica|type=CDS|length=23598bp|location=Sequence derived from alignment at sc0000146:84190..99332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012609 vs. Swiss-Prot (Human)
Match: ASSY (Argininosuccinate synthase OS=Homo sapiens GN=ASS1 PE=1 SV=2) HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0 Identity = 269/407 (66.09%), Postives = 330/407 (81.08%), Query Frame = 1
Query: 199 TVVLAYSGGLDTSCILVWLIEQGYDVIAYLADVGQEEDFEAARIKALQLGAKKIYIEDLKEQFVEEFIWPSVQANAIYEDRYLLGTAFARPCIARRQAEIAIKENAGYVSHGATGKGNDQIRFELTYYALYPGVKVIAPWKLPEFYEKYAGRLALFEYAKERNIPLPVTKDSPWSMDANLMHISYESGILEDPWREAPEDIYQMTTDPAKSPEKPSTIEIDFKNGLPVTTRDLDNGTTHNKPFEMFSYLNKIGGKHGIGRIDIVENRKIGMKSRGIYETPAGEILRHSHIDIEAMTMDRELRKIKSYLSTQFSEQVYNGLWFSPECEFVRKCINDSQKNVEGVVRMSIFKGQVYIKARKSDASLYNQELVSMDVKGDYNPQDAAGFIKVSALRLSEHTRLQRHLQQK 1419
+VVLAYSGGLDTSCILVWL EQGYDVIAYLA++GQ+EDFE AR KAL+LGAKK++IED+ +FVEEFIWP++Q++A+YEDRYLLGT+ ARPCIAR+Q EIA +E A YVSHGATGKGNDQ+RFEL+ Y+L P +KVIAPW++PEFY ++ GR L EYAK+ IP+PVT +PWSMD NLMHISYE+GILE+P +AP +Y T DPAK+P P +EI+FK G+PV ++ +GTTH E+F YLN++ GKHG+GRIDIVENR IGMKSRGIYETPAG IL H+H+DIEA TMDRE+RKIK L +F+E VY G W SPECEFVR CI SQ+ VEG V++S+ KGQVYI R+S SLYN+ELVSM+V+GDY P DA GFI +++LRL E+ RLQ + K
Sbjct: 6 SVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK 412 The following BLAST results are available for this feature:
BLAST of TCONS_00012609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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