TCONS_00012617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012617
Unique NameTCONS_00012617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012617 ID=TCONS_00012617|Name=TCONS_00012617|organism=Clytia hemisphaerica|type=transcript|length=3779bp
TTTGTTACTTGGGCCGAAAATCCATGTTCATATCTTCTACATGTATTGAC
AAGACATGGCTAAAAAATCAATTAACTTCAACACAATCACTCTACAAGAG
CTTGAAAAGATCCCTGGTATTGGAAAGTTTAAAGCCCAATCACTGGTTGA
TGAACGAAACCATAGATTGTTTAAGAACATAAATGACTTGATCAAAGTTG
AAGGACtcactttgttatttttaaacagACTTCAGAACAAATTTGACTTT
ATTTTCGATACACAATCACCATGCAAAACAAATGCTCTAAAAAGGAAAAC
CGAAAATGTAGATACTTCAATTGATGAAAAAGACAATGGGATCACAACAC
CAGAGAAGAAAGCCAGACCAAAATATAACAATAAATGTGCTTCAACTTCC
AGCTCAAAGATTGTCCCAAATGTGGAGAATGCTCTTTGTAATAGAACTAT
ACCTTCATGTGATAGTCCTGGAAAAGCAGTACGTAGTAGGCTTCAATCAG
AAACAGCTAAGCCACCTGATGGACTTCCAGATTGGTTGAATAAATTCCAT
GACTGGTCCAGAGATGAGAGATTGATTGCGTTAAATGACTTGATAGGTTT
ATGTGATATGTCGGTCGTCAGACACATGATGGCCAAAATTGAGCCACATT
TTCAAAGGGAttttatatctttattaccAAAAGAGTTGGCACTCTATGTT
TTATCTTTCTTGGAACCAAAAGATTTATCAAATGCTGCAAGGACTTGCAG
ATATTGGAGGATCCTTGGAGAAGACAATCTGTTATGGAAGGAGAAATGCC
ATGAATATCAGTTATTTTATCCTCTAAGTGATCTTTTAGAAGAAGGAAAG
GTTGATAAGAAGGCATCACAACCTAATGAGGCACCTTACAAAGAACTTTT
TGCTTATTGTCACAAATTGGAGCGGAATTGGAGGTCAAACACTTTGAGGC
CTGTCATGTATTTAAGAGGTCATGATGATCATGTTGTAACTTGCTTACAG
TTCGACGGTGTTCGTATAGTCAGTGCCTCAGATGATAATACGTTAAAAGT
GTGGTCTGCTGATACTGGAACTTTGATTCGCACCCTTGTGGGACATACAG
GTGGTGTGTGGTCATCACAATTAAGTGGAAATATAGTTGTGAGTGGCTCA
ACAGACAGGACGCTGAGGGTCTGGAATGCTGATTCAGGAGAATGTATCCA
TGTTTTACAAGGTCACACATCAACTGTTCGTTGCCTGGCAATGCATGGAG
ATAACGTAGTAAGCGGATCCAGAGATGGAACTCTACGTGTCTGGGATGTC
ATGAAAGGAACACATCTTCATGTTTTGATTGGTCATGCAGCTGCTGTCAG
ATGTGTACAATACAATGGTAAATACGTTGTCAGCGGTGCTTATGATTATT
TGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGTTTGCATACTCTGACT
GGTCATTCAAATCGTGTCTACTCATTACAGTTTGATGGTAAATACATCGT
GTCTGGCTCTCTGGATACTTCGATACGTGTTTGGGATGCTCTTAGTGGGC
AGTTATTACACACACTCTTAGGTCATCAATCTTTGACTAGTGGAATGGTG
TTGAAGAATAATTACTTAGTATCTGGGAATGCAGATTCTACTGTAAAAAT
CTGGGATATTGTATCTGGACAATGTTTACATACTTTAACTGGTCCCAATA
AACATCAAAGTGCTGTGACTTCTTTACAATTCAATACTAAGTTTGTGGTT
ACTAGTTCTGACGATGGATCAGTGAAATTATGGGATCTAAAGACAGGAGA
ATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAGGATCTGGCGGTGTGG
TTTGGCGTgtcaaatgcaatgaaaagaaACTTGTATGTGCAGTTGGTAGC
AGGAATGGTACAGAGGAAACTAAACTGTTAGTGTTAGATTTTGATATTCC
CTCTATACAATTTACGTGATTTCAAACTATGATTAATGGGTTGTCCTTGG
CATTATACTAAGAAATTTGTATCCACTCACATGTAGCTTAGATCACCAGT
CTTCCTATGCGAATATAGGGAGATtgtttaaagtttctttttcatCAGTT
ATTCAATAAATCCTTATTATAATATTCGTTTATTCagaatttatcaattt
tttatatGTTAATTTTATATTAATGTTATAGTAGATGTGCATTTGCTCTT
CTTTCATACAACAAACAATAATGTGCAATATTTATAATGTCTTTTTAGGG
ATGCTGTCAATGTATGCTATGTATACATTACAACATCGTTGCTTTGTTCC
TTTGAGAAAagtttttgtatctttttgaACTACTAGTGTATTCTGTATTT
AAACAGGCATCTTGTCACAGTTTTATGAATTGATCAATTACCAATGCTCA
ATGAAAGGGTTTCATAGTTTTGAGCTCGACGTTTcattgtttttcatgtt
ttatttatTCGTTTCTCCgtgtttattgttgtttattgttGATGAGTTTT
CATGATGTATGTGTGTTGACtctttctctctaattcgatgtaCAAGGGGC
CTaagattttcttcgaattacagaaagattcgaattacagagtaAATCAA
ACCCATCAAACCACTTCTCAGccgaggggaccaatatttgaGTTGGAATT
AAAGAGAGATTCCATAAAAGGAAGTTCGAATTCAAACCCATCAAACCACT
TCTCAGccgaggggaccaatatttgaGTTGGAATTAAAGAGAGATTCCAT
AAAAGGAAGTTCGAATTCAAACCCATCAAACCACTTCTCAGccgagggga
ccaatatttgagttcgaattagagagagtatGCGTGCTTTTCCCCTTACC
TTTGACCTACTCGATAATAGGTTTACTAAAATTCAAACCCATCAAACCAC
TTCTCCATTCCATAAAaggaggttcgaattagagagagtatGCGTGCTTT
TCCCCTTACCTTTGACCTACTCGATACTAAAACCAAAATTAGCTTCTCTA
aacctaaaaacgttttaataGAACAACTTTAAGGCTCAAATGTAAAAAAA
TAGCTGTATATATTCGGTTATAATATCTAAAATGTGGTTTCTTCATCGTC
TCTTCTCaacaaaattcaatattttattttatcttaatTCTTATTTATTG
CATTTATAAAATTTATGTGTGATTCGTTTTCTTGTGTGCAATGTGCAACG
AATTAGACTTTATAGGCCCTCTTATATCAGATACATTTGCTAACAAATTC
ATTTTGGGATCCCTGCTACTTCGTGCACCTTTTCCCTTTTAATCAATTAT
TGATTTTCTTGGTGTTTGAATATTTCAGCTTTTTCAAACACGTGTGATTT
TGTACACACTTAATAGTCTCTATAAGCCCTTAAACTTACGAGGTTTTGCA
AGAGTTTTATTGATTGTTTTTATGTTCACAACTGCATTTCGTCCGTTATA
TGGACATACACCTTtaaatataatattattttgattGTGCATCTAGTTAG
AAAAACAAACgtttaggcgagaccaatttaatttgttgctctacggacag
atcgttagaaaaatatgggtcggtcggtctgcaaaataagaataaatttt
tcatttatcagggttggtaaggtaccgagaaaattttctccaaaaggtat
atggatcaaaaattcactttgttttttatcttcgatgaagatcataataa
aattttagtgtatggaatgctttttatgatttttcaatttcttgaattaa
ttttcagctttattcaagtttaattcCTA
Run BLAST on NCBI

transcript from alignment at sc0000146:128026..145563+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012617 ID=TCONS_00012617|Name=TCONS_00012617|organism=Clytia hemisphaerica|type=transcript|length=17538bp|location=Sequence derived from alignment at sc0000146:128026..145563+ (Clytia hemisphaerica)
TTTGTTACTTGGGCCGAAAATCCATGTTCATATCTTCTACATGTATTGAC
AAGGTAACCATTCACACAATTAGATCAGATTTTTCTGCATAGTAGGTTTT
GTTTTaatcatttttacatttttcttaaaatttccatCATGGCAGTTTTT
CATTGTGATTTCTGGCAGGCTTGCCTCTTGTGGACCCTCTTCATTTCCAT
TTGGATTAGAACCTACATGACTATCAAGGATCAGCTAGTACGAAACGCAG
GTTAAGGTTACAGGTTTCAGGGccagggttcaggtttcagggccagggta
gggtgcgcactcgtcgggattttttgcgtggaaaaagtcgaaaatcaaaa
ttagaacattccatccatcataacttatccttaacaactccaaacttgtt
cattcttttttttttaatactcagaatttatcagagaaaacaaagaaaaa
aaccccatcccattacctaccttcaataaaaagatatacaaTTTATTAGA
CATCAAGGTGGAAAAATGGCGACTCGGAATTTGTGGCACCACCGTCGacc
ttgaccaccatttttcaaatggctatcgctaatgagctggatttGTTATG
GACtcacagttttttttataaaacgcgggaaagatcgtactttagtttgt
cacgtggtagccttttcgataatctacgggccatctttaaatcgagaaaa
aagaagaaatttcgatttttcggcactttcctgaaatttttatcagggct
accatatatggttggaaagctaagggtttcAGCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCATTAGCGataggctaaagtttaacagtcatcgggccgattttcagac
cgcgccagcaaaactcctcacgccctgccacacggaagactacaTTTCAT
CCGctatttttggcgcgattttggtgcttccgaaaattatttcttgctgg
cgtggtgtaaggaggcgattctttgaaaaggtgttttttttgtggtttga
aaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtaataaatgacccctcatttttctcac
aaaggtaaggactttcaaataaaattagtttggttttcaaaatttgaggg
gaaaattttggcctgaccaccctagccagggttcaggtttcagggccGGG
GCTCAGGTTTCAGGACCAGGGTTCAGGGTTCAGAGCTCAGGTTAAAATTA
TCTACAAAACAGACTTGCCTTTTTCAAATTACTGACCTCTTTActtctct
tttctctttacaCTCTTTGTGTGGGGGGAGGGGGATCAAACAAAAAAGCG
AGGGTTGAATGGCATGGAATGCATTCACACCTGACCTTTCACAtctttat
ttgataaaaatttacaGTTGGTATTTCATTTGAGTAATAAAAGCTTCGTT
GTTAAAAAcgccgataaaatttttcttttaagaacacaaattcaacaaaa
aattaagttagTTTTAgcagattttacaaaaaagagaaaaaaaatttgtc
gtCTTCTATTCCAGCCAATTTCATCTTACCAAATAAGTTttataaaaaac
tatttctttttaaaaaatgggtGGGTGATACTTTcttgctttgaaagaaa
aaataatttaatgttaCGGATGATTTCCACTGGTTCTGATCTTACTCTTT
CAAAAAACGATAAGCGTTTTGCCATATTTCTTTTTACAGGAGGAATAATA
taacttattattttttcgttattATTCTGTTCAATATAATAGTAATTGTT
CTTGGTTAATGCTTTGATTTATAATTCTGCTTGTAATAGAATATTTTAGT
TAATTATTGTTTATTCAACGAGTTTTGTAACAAAAAGATAATTTGTACGT
CAAAtgaattatgaaatattttcaaagcaaCGCTGAAAGTAGTAGTGGTA
GTACCTGCTGTCTcatattttaaaaagtattgcTCACCACCAAActatta
aaagtttaaaaagaaaacacacaAGTATTATATAGAACATCAAGCAAATG
GTCTGCAGAATAAATAAATATGCCTTGGAACATTCTGGTCTGCAATGTAC
ACAATTTTAACATGaaccctgaaacctgaaccctggCCCTGAACCCTGAA
CCCTGGCCTTGAAACCTGAACCCTGGCCCTGAAACCTGTGACCTGGGCCT
GTGTTTCGTACTAGCCGATCAAGGATGTAGATCAGAACATTTTGCTGAAA
GGTTCAGAAAATGAGCTTTGAGCACATCTTGCAATAGACCTTTCCCCTTT
CCTCTCCATCATCCTGCCATAttcagtcaggacctctttggtctttttta
acattagttcggttagaataaaaacatacctgatcaacacaaccaaacct
tctgtcttgcatttactctttccttcccaacaacttttgtttttggttAT
GTGGGTTTTTAAAGTCCACTTAAGTatagtaatgaacctcttatacgctt
atctgaataaatctggttgaaaaccttctgtcaggtttcattccgtacgt
ttattatccacgtggtgaaccggtctacgaattattttctttaacgggcg
ttgaatcgacaatgacatatttaatgatgtcataatcatcaatgccgtgc
atattttgtcaatgccgtgcatattttgtcagcgccatgcatattttgtc
aacatccttttcattggataaataccactaaaatatacaagataagtaaa
cataaatttattgcCCGCGAGCATTATCTcagaattgaagcgggcaaaga
ttactgCGCAGATTGATAGCGGAcaaaggttttttgaagatattttcagt
tataatctaaggtagaacaaactaaacatagaaagggagtATTTTTCAGT
GCTCTATATGATGAtcagtattttttttgaattctatgtttagatttttc
tacccagccccgttgctatgtacgcacgccctgttgctaagacctttgct
tgaaatcggaactgaaaccaaaataatttagcgcacactgccgtttgcgt
aatatcaataaagtgaaatgaggtcctgactggcCATATtgaatgggcta
ttccaaaaaaatattgtataggggtattgacgaactatcccctggaaatt
aggggtcgacacccctggaaagtgaaattttgtgaaaaagggcctgGAAA
ATACCTATTGTTGATGTCAGTTTAGGAGgagagaaccccctggaaaatat
cccccttggaaaatctgaaaaatgaacaaaaacccttggaaaatcaaggc
tcagaccCTCTGGAagagttcgtcaatacccctgtatggtttaaaaatgg
aatagcccaatttttGTATgcaaatcatcatcatcattccCCTTAGAAAG
TAtccaaaacatatgcaaaaagaaagtattaatttaaaacttacatgcat
aattggcattatattaatgtgtaatcttgtagaagaaagattaaatttgc
ttctcttgaaaattaaaaataatcatattcgctcatctcttaccGTCAAT
tgttctaacttgggacgattggttgaaacattgAGAATGTTGATATTCTG
GCCTGTagtttcacttactgttaaatctctttgacaacaaatttgttttg
ataactccgccaagtttatcaatcaaactttctgtcataacatgtcacga
taactttcactgatagtgcaccctttttagtttttttgttttcattcaaa
atgaccggacaatgattggagaattagagaacgcctgtGGGATAACCGCC
TATTGCCTGATGGGATTTACAAATAACGAGTAAAACAGgggttttgatat
tttcttgcACAAGAAAGAgaatgtgtgtactccgtcttcgtggaattttt
taatggcatgaaaacagaatatgctatgtctttaagaacagtttctaaaa
ggcttttattGTTCTGTAagttattttctatttcttttatGCTTATTAGG
GCTTCTAATTAAAATAAAAGGTGCTTAGCCAATCTAACGGTCATTTCAGA
CAAAATGTTCAAAGGGGATGCATCCCTTTAGAACCACCCAATTTACCTCA
CATGGTCCAGGTTTGCTTGTCAGTAAATTATGCATGCAAACTTAGTTCAA
GTGATTTATTTTAGTAAGCTTTTTTGGGACTGgtcaaaattttagatgtt
taGATGATAACTTTTTATTGACTAAACAGATAACAAAGCTTCTtataaat
caacaaaaattgttcttattgactcgctttcttcgtaactttcatgagtg
tttctaagatcacttttatcggcttgtttacttcataactttcaagagtg
tttcttaGTAAATATTTATCGATTCGCTTTCTTcttaactttcaagagtg
tttttaagaccacttttatcaacttgcttacttcataactttcaagagtg
tttctaagatcacttttatcggcctgcttacttcataactttcaagagtg
tttaaaagttaactttatcaacttgcttacttcgtaactttcaagagtgt
ttctgagatcacttttatcaatttacTTTCTTTGTTAccttcaagggtgt
ttcaaagttaacttttattgaCTCGCtgtcttcgtaactttcaagagtgt
ttttaagaccacttttatcaacttgcttaggcggtcatcgaaaaattgtt
gtATTCgggtcacccgcccgcatcaaattttccgctgattttccggtgcg
gagatgcggaaaaaaatctgggaaaagcaatttgttctttttaaagcata
gcttttttctcaattgctctgacgaccatcgaaaaattgttttgctcgca
ttaccacccgcccctgtgTTACTGgtgtgattaaaaaaaaaccgggaatg
tttttgaccgcccgtccgcccgcatgtattttaacacccgttgcgacgcg
aacagagcattttttcgatgaccgccttacttcataactttcaagagtgt
ttctaagatcacttttataggcttgcttacttcataacactttcaagagt
gtttcaaagttaacttttattgactcgctttcttcgtaactttcaagagt
gtttttaagaccacttttatcaacttgcttacttaataactttcaagagt
gtttctaagatcacttttatcggcttgctttcttcgtaactttcaggagt
gtttctaagatcacttctATCAGcttgcttacttcataactttcaagagt
gtttcaaagttaacttttattgactcgctttctttgtaactttcaagagt
gtttctaagatcacttttatgaatttgctttctttgttactttcaagggt
gttccaaagttaacttttattgaCTTGCTTTCTtagtaactttcaagagt
gtttttaagaccacttttatcaacttgcttacttcctaactttcaagagt
gtttctgagttaacttttatcaactcgctttcttcgtaacttttaagagt
gtttctaagttaacttttatcaacttgctttctttgtaactttcaagggt
gtttctaagatcactttaatcgaatcaatttctccgttacagtaacaaac
tgttcCAAGGTAACTTTTAGTTTACCTACTCTCTTTCTCCGTAACTTTCA
AGActgcataattttagaaaaatatacactgaatgaccgacaggattttg
agtttgaccaacaggatttcatttctgttGGACATGATGTCCGATAGACT
AATTATATTTATTTGTAGCCCTGTACTATTGTGTTTTGATTCAGCAAATT
ATTGTAATTTTACAGCTAGCCAATAATAAGCAACCCTTAAAAGGCTCACT
TTTAAAATATAAGAATGTTTATATTGCCTgtggcaatttttttaaagata
attttGTATGAATTCTTTATTCACCTTCATTATAAACATTTTAGAATGAC
ATTGTTGACATGATTATAATTTGTTTTGAGGCAGCTCTTATACTTGTTTT
ATTTATTACAACCTCGAACACTCAGAGACAAGTTTGTACAATGCTTAATC
TTGATATTTTACTTttaccatagtcattataaaagcACTGATCTGGAAgg
cttttttctcttttaatattaaaagatggagcttacgtaccaaaatcaat
ttattttgcagactttttgatcatgtgattagaaaatagaccaatcccaa
gaggagatttttgtaacatgatcaaaaagtatgcgaattgcaacttgtct
tttgtttgtaagaaaagaaaattgaacaaaaagctaaaacaatacattgc
cagaccggggttttttataatgactatgcttTTACAATGGCTTGTACTGA
TCCTTCTTCTTTTAAACAGACATGGCTAAAAAATCAATTAACTTCAACAC
AATCACTCTACAAGAGCTTGAAAAGATCCCTGGTATTGGAAAGTTTAAAG
CCCAATCACTGGTTGATGAACGAAACCATAGATTGTTTAAGAACATAAAT
GACTTGATCAAAGTTGAAGGACtcactttgttatttttaaacagACTTCA
GAACAAATTTGACTTTATTTTCGATACACAATCACCATGCAAAACAAATG
CTCTAAAAAGGAAAACCGAAAATGTAGATACTTCAATTGATGAAAAAGAC
AATGGGATCACAACACCAGAGAAGAAAGCCAGACCAAAATATAACAATAA
ATGTGCTTCAACTTCCAGCTCAAAGATTGTCCCAAATGTGGAGAATGCTC
TTTGTAATAGAACTATACCTTCATGTGATAGTCCTGGAAAAGCAGTACGT
AGTAGGCTTCAATCAGAAACAGCTAAGCCACCTGATGGACTTCCAGATTG
GTTGAATAAATTCCATGACTGGTCCAGAGATGAGAGATTGATTGCGTTAA
ATGACTTGATAGGTTTATGTGATATGTCGGTCGTCAGACACATGATGGCC
AAAATTGAGCCACATTTTCAAAGGGAttttatatctttattaccAAAAGA
GTTGGCACTCTATGTTTTATCTTTCTTGGAACCAAAAGATTTATCAAATG
CTGCAAGGACTTGCAGATATTGGAGGATCCTTGGAGAAGACAATCTGTAA
GCCATCATCTTTTCTCTTTGTTTGTTCTTTGATAGTGAAACTGAATTTTG
TTTATGGCAGTGACAGTGTTAGAATATAAATTGTTTTTCTATACTCTAAA
TTTAAACAAAATGTGTTATTTTTAGGTCAATTGATGCTATTataaaaaag
cctaaattttcaGAAGGTTGAAACCAATTATTATTCTTTCTTTAGGTTAT
GGAAGGAGAAATGCCATGAATATCAGTTATTTTATCCTCTAAGTGATCTT
TTAGAAGAAGGAAAGGTTGATAAGAAGGCATCACAACCTAATGAGGCACC
TTACAAAGAACTTTTTGCTTATTGTCACAAATTGGAGCGGAATTGGAGGT
CAAACACTTTGAGGCCTGTCATGTATTTAAGAGGTCATGATGATCATGTT
GTAACTTGCTTACAGTTCGACGGTGTTCGTATAGTCAGTGCCTCAGATGA
TAATACGTTAAAAGTGTGGTCTGCTGATACTGGAACTTTGATTCGCACCC
TTGTGGGACATACAGGTTTggattatttttatacaaaaaagcATGAAATG
GTCTTAATGTCTTATTGAAACTTCAACCAAGTGGGGCTGCCTATTTGATA
TGCGTAATTCTGTCACTTTTATCATCCCACAATATATTTGACTGCTTCAT
GATATGTTTAGGACATTTTTGAATAATGTTCTATAAATATTGAATTACTT
CAAATAGGTGGTGTGTGGTCATCACAATTAAGTGGAAATATAGTTGTGAG
TGGCTCAACAGACAGGACGCTGAGGGTCTGGAATGCTGATTCAGGAGAAT
GTATCCATGTTTTACAAGGTCACACATCAACTGTTCGTTGCCTGGCAATG
CATGGAGATAACGTAGTAAGCGGATCCAGAGATGGAACTCTACGTGTCTG
GGATGTCATGAAAGGAACACATCTTCATGTTTTGATTGGTCATGCAGCTG
CTGTCAGATGGTAAAACTGTTCTTAGACCCCACATCCAGGCTTTTGTGGT
TTTGGTTACTTTCTCTGATTTTTCATAATATTTATAGCTCAACAACAAAC
AATTATTTAAGCATAgaattgtaaaaatttaaattgtgcTACACCGCAAC
TTTTTTCAACGTATTTCCACTCCAGTTGAAGCTCTCTCCTTAAAATCTTG
CATCCATTTTTGCTAATGGTGTGTATATTGATTCCATTATACTAGTTTTA
gtaaagaaaacaagttttaaagtTTATTCCATTATATTGATTTCATATAT
GATATTTATTTTCAACAGTGTACAATACAATGGTAAATACGTTGTCAGCG
GTGCTTATGATTATTTGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGT
TTGCATACTCTGACTGGTCATTCAAATCGTGTCTACTCATTACAGTTTGA
TGGTAAATACATCGTGTCTGGCTCTCTGGATACTTCGATACGTGTTTGGG
ATGCTCTTAGTGGGCAGTTATTACACACACTCTTAGGTCATCAATCTTTG
ACTAGTGGAATGGTGTTGAAGAATAATTACTTAGTATCTGGGAATGCAGA
TTCTACTGTAAAAATCTGGGATATTGTGTCTGGACAATGTTTACATACTT
TAACTGGTCCCAATAAACATCAAAGTGCTGTGACTTCTTTACAATTCAAT
ACTAAGTTTGTGGTTACTAGTTCTGACGATGGATCAGTGAAATTATGGGA
TCTAAAGACAGGAGAATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAG
GATCTGGCGGTGTGGTTTGGCGTgtcaaatgcaatgaaaagaaACTTGTA
TGTGCAGTTGGTAGCAGGAATGGTACAGAGGAAACTAAACTGTTAGTGTT
AGATTTTGATATTCCCTCTATACAATTTACGTGATTTCAAACTATGATTA
ATGGGTTGTCCTTGGCATTATACTAAGAAATTTGTATCCACTCACATGTA
GCTTAGATCACCAGTCTTCCTATGCGAATATAGGGAGATtgtttaaagtt
tctttttcatCAGTTATTCAATAAATCCTTATTATAATATTCGTTTATTC
agaatttatcaattttttatatGTTAATTTTATATTAATGTTATAGTAGA
TGTGCATTTGCTCTTCTTTCATACAACAAACAATAATGTGCAATATTTAT
AATGTCTTTTTAGGGATGTTGTCAATGTATGCTATGTATACATTACAACA
TCGTTGCTTTGTTCCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGGCACTCTATGTTTTATCTTTCTTGGAA
CCAAAAGATTTATCAAATGCTGCAAGGACTTGCAGATATTGGAGGATCCT
TGGAGAAGACAATCTGTAAGCTATCATCTTTTCTCTTTGTTTGTTCTTTG
ATAGTGAAACTGAATTTTGTTTATGGCAGTGACAGTGTTGGAATATAAAT
TGTTTTTCTATACTCTAAATTTAAACAAAATGTGTTATTTTTAGGTCAAT
TGATGCTATTataaaaaagcctaaatttcTAGAAGGTTGAAACCAATTAT
TATTCTTTCTTTAGGTTATGGAAGGAGAAATGCCATGAATATCAGTTATT
TTATCCTCTAAGTGATCTTTTAGAAGAAGGAAAGGTTGATAAGAAGGCAT
CACAACCTAATGAGGCACCTTACAAAGAACTTTTTGCTTATTGTCACAAA
TTGGAGCGGAATTGGAGGTCAAACACTTTGAGGCCTGTCATGTATTTAAG
AGGTCATGATGATCATGTTGTAACTTGCTTACAGTTCGACGGTGTTCGTA
TAGTCAGTGCCTCAGATGATAATACGTTAAAAGTGTGGTCTGCTGATACT
GGAACTTTGATTCGCACCCTTGTGGGACATACAGGTTTggattattttta
tacaaaaaagcATGAAATGGTCTTAAAATGTCTTATTGAAACTTCAACCA
AGTGGGGTTGCCTATTTGATATGCGTAATTCTGTCACTTTTATTATCCCA
CAATATATTTGACTGCTTCATGATATGTTTAGGACATTTTTGAATAATGT
TCTATAAATATTGAATTACTTCAAATAGGTGGTGTGTGGTCATCACAATT
AAGTGGAAATATAGTTGTGAGTGGCTCAACAGACAGGACGCTGAGGGTCT
GGAATGCTGATTCAGGAGAATGTATCCATGTTTTACAAGGTCACACATCA
ACTGTTCGTTGCCTGGCAATGCATGGAGATAACGTAGTAAGCGGATCCAG
AGATGGAACTCTACGTGTCTGGGATGTCATGAAAGGAACACATCTTCATG
TTTTGATTGGTCATGCAGCTGCTGTCAGATGGTAAAACTGTTCTTAGACC
CCACATCCAGGCTTTTGTGGTTTTGGTTACTTTCTCTGATTTTTCATAAT
ATTTATAGCTCAACAACAAACAATTATTTAAGCATAgaattgtaaaaatt
taaattgtgcTACACCGCAACTTTTTTCAACGTATTTCCACTCCAGTTGA
AGCTCTCTCCTTAAAATCTTGCATCCATTTTTGCTAATGGTGTGTATATT
GATTCCATTATACTAGTTTTAgtaaagaaaacaagttttaaagtTTATTC
CATTATATTGATTTCATATATGATATTTATTTTCAACAGTGTACAATACA
ATGGTAAATACGTTGTCAGCGGTGCTTATGATTATTTGGTAAAAGTTTGG
GATGTTGAAACAGAGACTTGTTTGCATACTCTGACTGGTCATTCAAATCG
TGTCTACTCATTACAGTTTGATGGTAAATACATCGTGTCTGGCTCTCTGG
ATACTTCGATACGTGTTTGGGATGCTCTTAGTGGGCAGTTATTACACACA
CTCTTAGGTCATCAATCTTTGACTAGTGGAATGGTGTTGAAGAATAATTA
CTTAGTATCTGGGAATGCAGATTCTACTGTAAAAATCTGGGATATTGTGT
CTGGACAATGTTTACATACTTTAACTGGTCCCAATAAACATCAAAGTGCT
GTGACTTCTTTACAATTCAATACTAAGTTTGTGGTTACTAGTTCTGACGA
TGGATCAGTGAAATTATGGGATCTAAAGACAGGAGAATTCCTTAGAGACT
TGGTTGAATTAGATTCTGGAGGATCTGGCGGTGTGGTTTGGCGTgtcaaa
tgcaatgaaaagaaACTTGTATGTGCAGTTGGTAGCAGGAATGGTACAGA
GGAAACTAAACTGTTAGTGTTAGATTTTGATATTCCCTCTATACAATTTA
CGTGATTTCAAACTATGATTAATGGGTTGTCCTTGGCATTATACTAAGAA
ATTTGTATCCACTCACATGTAGCTTAGATCACCAGTCTTCCTATGCGAAT
ATAGGGAGATtgtttaaagtttctttttcatCAGTTATTCAATAAATCCT
TATTATATTCGTTTATTCagaatttatcaattttttatatGTTAATTTTA
TATTAATGTTATAGTAGATGTGCATTTGCTCTTCTTTCATACAACANATG
ATATTTATTTTCAACAGTGTACAATACAATGGTAAATACGTTGTCAGCGG
TGCTTATGATTATTTGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGTT
TGCATACTCTGACTGGTCATTCAAATCGTGTCTACTCATTACAGTTTGAT
GGTAAATACATCGTGTCTGGCTCTCTGGATACTTCGATACGTGTTTGGGA
TGCTCTTAGTGGGCAGTTATTACACACACTCTTAGGTCATCAATCTTTGA
CTAGTGGAATGGTGTTGAAGAATAATTACTTAGTATCTGGGAATGCAGAT
TCTACTGTAAAAATCTGGGATATTGTGTCTGGACAATGTTTACATACTTT
AACTGGTCCCAATAAACATCAAAGTGCTGTGACTTCTTTACAATTCAATA
CTAAGTTTGTGGTTACTAGTTCTGACGATGGATCAGTGAAATTATGGGAT
CTAAAGACAGGAGAATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAGG
ATCTGGCGGTGTGGTTTGGCGTgtcaaatgcaatgaaaagaaACTTGTAT
GTGCAGTTGGTAGCAGGAATGGTACAGAGGAAACTAAACTGTTAGTGTTA
GATTTTGATATTCCCTCTATACAATTTACGTGATTTCAAACTATGATTAA
TGGGTTGTCCTTGGCATTATACTAAGAAATTTGTATCCACTCACATGTAG
CTTAGATCACCAGTCTTCCTATGCGAATATAGGGAGATtgtttaaagttt
ctttttcatCAGTTATTCAATAAATCCTTATTATAATATTCGTTTATTCa
gaatttatcaattttttatatGTTAATTTTATATTAATGTTATAGTAGAT
GTGCATTTGCTCTTCTTTCATACAACAAACAATAATGTGCAATATTTATA
ATGTCTTTTTAGGGATGTTGTCAATGTATGCTATGTATACATTACAACAT
CGTTGCTTTGTTCCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNTCCAGTTGAAGCTCTCTCCTTAAAATCTTGCATCCA
TTTTTGCTAATGGTGTGTATATTGATTCCATTATACTAGTTTTAgtaaag
aaaacaagttttaaagtTTATTCCATTATATTGATTTCATATATGATATT
TATTTTCAACAGTGTACAATACAATGGTAAATACGTTGTCAGCGGTGCTT
ATGATTATTTGGTAAAAGTTTGGGATGTTGAAACAGAGACTTGTTTGCAT
ACTCTGACTGGTCATTCAAATCGTGTCTACTCATTACAGTTTGATGGTAA
ATACATCGTGTCTGGCTCTCTGGATACTTCGATACGTGTTTGGGATGCTC
TTAGTGGGCAGTTATTACACACACTCTTAGGTCATCAATCTTTGACTAGT
GGAATGGTGTTGAAGAATAATTACTTAGTATCTGGGAATGCAGATTCTAC
TGTAAAAATCTGGGATATTGTATCTGGACAATGTTTACATACTTTAACTG
GTCCCAATAAACATCAAAGTGCTGTGACTTCTTTACAATTCAATACTAAG
TTTGTGGTTACTAGTTCTGACGATGGATCAGTGAAATTATGGGATCTAAA
GACAGGAGAATTCCTTAGAGACTTGGTTGAATTAGATTCTGGAGGATCTG
GCGGTGTGGTTTGGCGTgtcaaatgcaatgaaaagaaACTTGTATGTGCA
GTTGGTAGCAGGAATGGTACAGAGGAAACTAAACTGTTAGTGTTAGATTT
TGATATTCCCTCTATACAATTTACGTGATTTCAAACTATGATTAATGGGT
TGTCCTTGGCATTATACTAAGAAATTTGTATCCACTCACATGTAGCTTAG
ATCACCAGTCTTCCTATGCGAATATAGGGAGATtgtttaaagtttctttt
tcatCAGTTATTCAATAAATCCTTATTATAATATTCGTTTATTCagaatt
tatcaattttttatatGTTAATTTTATATTAATGTTATAGTAGATGTGCA
TTTGCTCTTCTTTCATACAACAAACAATAATGTGCAATATTTATAATGTC
TTTTTAGGGATGCTGTCAATGTATGCTATGTATACATTACAACATCGTTG
CTTTGTTCCTTTGAGAAAagtttttgtatctttttgaACTACTAGTGTAT
TCTGTATTTAAACAGGCATCTTGTCACAGTTTTATGAATTGATCAATTAC
CAATGCTCAATGAAAGGGTTTCATAGTTTTGAGCTCGACGTTTcattgtt
tttcatgttttatttatTCGTTTCTCCgtgtttattgttgtttattgttG
ATGAGTTTTCATGATGTATGTGTGTTGACtctttctctctaattcgatgt
aCAAGGGGCCTaagattttcttcgaattacagaaagattcgaattacaga
gtaAATCAAACCCATCAAACCACTTCTCAGccgaggggaccaatatttga
GTTGGAATTAAAGAGAGATTCCATAAAAGGAAGTTCGAATTCAAACCCAT
CAAACCACTTCTCAGccgaggggaccaatatttgaGTTGGAATTAAAGAG
AGATTCCATAAAAGGAAGTTCGAATTCAAACCCATCAAACCACTTCTCAG
ccgaggggaccaatatttgagttcgaattagagagagtatGCGTGCTTTT
CCCCTTACCTTTGACCTACTCGATAATAGGTTTACTAAAATTCAAACCCA
TCAAACCACTTCTCCATTCCATAAAaggaggttcgaattagagagagtat
GCGTGCTTTTCCCCTTACCTTTGACCTACTCGATACTAAAACCAAAATTA
GCTTCTCTAaacctaaaaacgttttaataGAACAACTTTAAGGCTCAAAT
GTAAAAAAATAGCTGTATATATTCGGTTATAATATCTAAAATGTGGTTTC
TTCATCGTCTCTTCTCaacaaaattcaatattttattttatcttaatTCT
TATTTATTGCATTTATAAAATTTATGTGTGATTCGTTTTCTTGTGTGCAA
TGTGCAACGAATTAGACTTTATAGGCCCTCTTATATCAGATACATTTGCT
AACAAATTCATTTTGGGATCCCTGCTACTTCGTGCACCTTTTCCCTTTTA
ATCAATTATTGATTTTCTTGGTGTTTGAATATTTCAGCTTTTTCAAACAC
GTGTGATTTTGTACACACTTAATAGTCTCTATAAGCCCTTAAACTTACGA
GGTTTTGCAAGAGTTTTATTGATTGTTTTTATGTTCACAACTGCATTTCG
TCCGTTATATGGACATACACCTTtaaatataatattattttgattGTGCA
TCTAGTTAGAAAAACAAACgtttaggcgagaccaatttaatttgttgctc
tacggacagatcgttagaaaaatatgggtcggtcggtctgcaaaataaga
ataaatttttcatttatcagggttggtaaggtaccgagaaaattttctcc
aaaaggtatatggatcaaaaattcactttgttttttatcttcgatgaaga
tcataataaaattttagtgtatggaatgctttttatgatttttcaatttc
ttgaattaattttcagctttattcaagtttaattcCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007079XLOC_007079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012617-exon-sc0000146-1491911889:128026..128078TCONS_00012617-exon-sc0000146-1491911889:128026..128078Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1510915933:128026..128078TCONS_00012617-exon-sc0000146-1510915933:128026..128078Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1575043694:128026..128078TCONS_00012617-exon-sc0000146-1575043694:128026..128078Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1491911889:134645..135371TCONS_00012617-exon-sc0000146-1491911889:134645..135371Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1510915933:134645..135371TCONS_00012617-exon-sc0000146-1510915933:134645..135371Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1575043694:134645..135371TCONS_00012617-exon-sc0000146-1575043694:134645..135371Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1491911889:135571..135890TCONS_00012617-exon-sc0000146-1491911889:135571..135890Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1510915933:135571..135890TCONS_00012617-exon-sc0000146-1510915933:135571..135890Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1575043694:135571..135890TCONS_00012617-exon-sc0000146-1575043694:135571..135890Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1491911889:136083..136335TCONS_00012617-exon-sc0000146-1491911889:136083..136335Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1510915933:136083..136335TCONS_00012617-exon-sc0000146-1510915933:136083..136335Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1575043694:136083..136335TCONS_00012617-exon-sc0000146-1575043694:136083..136335Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1491911889:143138..145563TCONS_00012617-exon-sc0000146-1491911889:143138..145563Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1510915933:143138..145563TCONS_00012617-exon-sc0000146-1510915933:143138..145563Clytia hemisphaericaexon
TCONS_00012617-exon-sc0000146-1575043694:143138..145563TCONS_00012617-exon-sc0000146-1575043694:143138..145563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:128026..145563 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10363	1.15669	7.25608	7.78324	3.30627	0.636867	3.63449	3.99661	1.37551	1.66504	1.13576	1.17867	1.17512	0.972103	0.777623	0.88442	1.05937	1.04355	6.2234e-07	1.15517	1.75478	1.10431	1.63492	1.55962	0.906515	1.14789	1.35593	1.71466	2.17268	1.81741
Blast
[Close]
BLAST of TCONS_00012617 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 344/518 (66.41%), Postives = 406/518 (78.38%), Query Frame = 2 
Query:  395 TSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSETAKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQRDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHEYQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLTGHSNRVYSLQFDGKYIVSGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLVELDSGGSGGVVWRVKCNEKKLVCAVGSRNGTEETKLLVLDFDI 1948
            TS++ +VP          + + +  G+  R R+ S   +PP GL +WL  F  WS  E+L+AL++LI  C+ + V+HMM  IEP FQRDFISLLPKELALYVLSFLEPKDL  AA+TCRYWRIL EDNLLW+EKC E  +  PL   ++  KV K       +P+K  +   H+++ NWR   L+    L+GHDDHV+TCLQF G RIVS SDDNTLKVWSA TG  +RTLVGHTGGVWSSQ+  NI++SGSTDRTL+VWNA++GECIH L GHTSTVRC+ +H   VVSGSRD TLRVWD+  G  LHVL+GH AAVRCVQY+G+ VVSGAYD++VKVWD ETETCLHTL GH+NRVYSLQFDG ++VSGSLDTSIRVWD  +G  +HTL GHQSLTSGM LK+N LVSGNADSTVKIWDI +GQCL TL GPNKHQSAVT LQFN  FV+TSSDDG+VKLWDLKTGEF+R+LV L+SGGSGGVVWR++ +  KLVCAVGSRNGTEETKLLVLDFD+
Sbjct:  194 TSTTGLVPCSATPTTFGDLRAANGQGQQ-RRRITS--VQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH--IKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 704
The following BLAST results are available for this feature:
BLAST of TCONS_00012617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXW70.000e+066.41F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
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