|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012634 ID=TCONS_00012634|Name=TCONS_00012634|organism=Clytia hemisphaerica|type=transcript|length=1566bp
TTCTTGGGTTTTCTCATTGAGGACAACAAGAACAGCAAAAAGAAATACCA
TCAACAGATACcaacaacaagaagaagaaaatgtacGAGCAATCTTTGGA
TGCTGAATATTTTCATCCATCATACAACAACATGTACCACCCTGAATCGC
AACATTTTTACGACGACTATAACAATAACAACAATTATATTAAAAACCAC
CCTTCGGTACCATCACCGCCCTACCTTCCAACACCACCATCCACACCGGA
CAAAATCCCAATGAGTTATGGTAATTTTAACCACCCTGTCGCCTCTGCAC
CACCGCCCTACATGACATCGCACAGTTATCATCATCAAACATCGACACAG
AATAACCAGTTCAGTCCAACATGCGATATGCAAGTTGTTCCTGATTTCTT
TGGAGGGAAAGATGACGAAAATATCAACCATGAAGtACACCACCCTTACG
CCAATCACCACCTCGATGAGAATTACAATCCAACCGCCACACCGCCCCAC
TATCTGCATTTACAACCGACACACCAACAACACAACAATGAAATGCCCGA
TATCGGTCAAAAACGAGTCTACAATAGCATCAATCACAATGCGCAAAGTC
CCATCGATTTTTACATGACCAATAGCAATCATGAGAATAACTACATCCGA
CAACAAATGGCCTACGAGGCAATGTTCCACGGCCATCCGGCCATGAAGCG
CCAAAGATACGACTCTCACGAAACGATAGAGCCAGAACTAAGTCGCGCGA
CACATAATATCCTTGAACGCCAAAGAAGAAACGACTTGAAGTTACGCTTC
AGTATTTTAAGAGACAATATACCAGAATTAGCCAGCCATGAGAAAGcacc
aaaaattcaaattttaagaaaaggaCTTGAGTATTTGACCATCCTAAAAA
GTGAAGAACAAAAATTAATAGCTGACAAAGAACTCGAAAAACAAAGGAAG
CTGATTTTAATGGAAAGGTTGAAGACGCTACGACAGAGTAATCattaaga
attttatttatttttttcagagatATATTTTAACTGAAGGTCCCAATTAA
TCCTAACGTTCTTTGATTACAGTTTTAAGCCTTTAAGGCTAATATGTTTT
GCAAAGAAAATTTGCCCAGTAGAGCTACATCCTACTCTTGTATATCCGAC
GCGGTGGGCAACCCAAACCACTTTCAAATCGAGCAAGTACTTTGTCTTAG
AActtctttgtaaaaagttttcgattggggctttattttatgattttttg
gcaatttcttcagacattcttttttttaaagatcttaTATTATTGTATAT
GTTTGTACTATTTTTATTAAAGAGAGAAAACACAATTTTAAAAGTCAGTA
TATTATTAGGTTTATTTCGCCTTAAAATTTGGGgaaataacattttaagg
ctctatTTTCACGAGCTTATATTACAGTactgatttttttgaagatgtAT
TTAATATTTTACGCGAAGAGatattgaaatcatttttgtacATATTGTAT
CTTTTGTTATATTATTTTGATCTTagtttttacagaaaaagatAGATTAA
AGCAGTCACCTTTAAT Run BLAST on NCBI transcript from alignment at sc0000146:269832..274561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012634 ID=TCONS_00012634|Name=TCONS_00012634|organism=Clytia hemisphaerica|type=transcript|length=4730bp|location=Sequence derived from alignment at sc0000146:269832..274561+ (Clytia hemisphaerica)
TTCTTGGGTTTTCTCATTGAGGGCGCGTTAATTCTGTTTCACATAATTTT
TATTGGCAAATTAGATTGTAGTAAACAAattgacatttcaaaataaaaaa
aaagtttaaaatatttatttttttcgttaTGCAAACACTTGAGAATATTT
TCATAGATTCTCCTTTCATCCACATCCTTGGTGACCAACTTCTTCAATga
atgctattttttccataattataaattgaatttgattGCCAATTTCTCTC
GATCGATCGagcaatgatttttttgttgttaattTTGGTCTTGACCTTTC
TTGAAACGTGGTTCTGAACTGAAATGGCGCGTAAAATCTATCATATTTTT
GCGGAAGCATAAAAGCATGAAGTTAGTTCGGTGATAACTTTCGAAGAGTG
ATATTGTGcgatttaaagttttttaatttatacAACAATCAGCTCTAATA
TTTTAGGGTATTACTTAAATTTGCTACCATATCATAGCATATTGTTTTGg
aattatgtttttttcttaattttcaactattttttgatTCCAGACAACAA
GAACAGCAAAAAGAAATACCATCAACAGATACcaacaacaagaagaagaa
aatgtacGAGCAATCTTTGGATGCTGAATATTTTCATCCATCATACAACA
ACATGTACCACCCTGAATCGCAACATTTTTACGACGACTATAACAATAAC
AACAATTATATTAAAAACCACCCTTCGGTACCATCACCGCCCTACCTTCC
AACACCACCATCCACACCGGACAAAATCCCAATGAGTTATGGTAATTTTA
ACCACCCTGTCGCCTCTGCACCACCGCCCTACATGACATCGCACAGTTAT
CATCATCAAACATCGACACAGAATAACCAGTTCAGTCCAACATGCGGTAA
GAAAGATTtcgaatttatgaaatttttactgtacacgttgtttttttatg
agaacatccaaaactttttgattttaaagcctATAAATGCTCTTTAAACA
TGTTATTTTCCcatttttgtgagtattttttcgCATTTTCccaggcacga
cgcaacgggtacggcaggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaatacccgaagttttcctcttcgtcggtaaactcgctataaaatcgct
taaatttcctcattcgccgtaccagatataaaaagcttccgtcgtgcctg
attttcctaagaaatcgggtgttttagagtcccctTAATGTCGCAAATTG
CCTTTTTAACACTTTGCTCCTCGAAGCcccatgttcttatataaaaaact
tgTTCAGTATTCAAAATCAGAATCTTTTGCTTTGGTGCATTTTGGTGCAT
ACTGTAACGAAATTCATCGAAATTTAGCATCGTTAGACATGAAGAGTGAA
TGAATTATTCCATTTTTCATCTCAGATATGCAAGTTGTTCCTGATTTCTT
TGGAGGGAAAGATGACGAAAATATCAACCATGAAGGTAAGCATTCTCAAA
CCTTTTCTATAAGAAATACATAGTGGAAATGTTGTTCTGAAGGAACAGGG
GAGGCTTGCACCCTTCaaagtttttatataaaaaccaGTGGTATTATCTC
TCTCATATTTTCTTTGTGTCTTCTTTTAATCGAAGTAACAAgataatagt
aataataatcAGAGTTAAACAAAAGAGATGTCAAGCCGAGACACCTGGCT
ATAATCGCCTCAGtaatattaaaaaagaaatgaaaaagagaatcaataaa
aagaaaataaagaaaagaattaATAGTTGTCAAAAATGATATTAACTGAA
CGGACGGTGTTTTTAcgtcaagaatttttttgaaatcatgaCAAAACCAG
CTGATTCTTCGACCTCTTGAGGTTTTAGGccttctgctgttttttgcccC
TAAATTGCTTATTTTGTGATCAAAAACCTGGCGACTACATTCCATATTTT
CGATGAATTCAAAGAGATAATATTTAATAGGTCTTAATTGGTCGAAGGTG
TAAATTATAGGAAGTCAAAAATAATCTCTTTTCGAGCGGTGATCTTACAA
TTACAATTTTCTTTTacttaaaatcgaaataaaattgatttatcaTCACT
GTTTCAAAAACCTTCGGACGAAAAGATTTTTCGAAAGCGGCGAATTTAAA
GTTTGAGGTTTTTCTACTATAAAAATTGTTGTGTGAAAAATGTTTTATAC
TATTTTCTACAAATAATAAAACGTCGGTAGAATTTTTCACACACAAAAAT
AGAACGGTCTATCTATTCTTGTGCCTGGCACCTAAAAAATCGATAACAAG
TCTTCAATTACGTTTATATAGttaaagaatttatttttagGCACCCGAAA
ACTTAAAGCCTTTTACATATagatatttgaaaccattttttaaGGGTTTT
CAAAACCGCTAGTATTAAAATTGGGGTAAAGAAATCATATTCTATTTGGC
GATGCCGTCTAAAAGGGTACGCTCTACGGGATATCAGACCTCTTGTAATC
TAGATTTCTTCACTCTcaaaaaagaaatcttcaaaaataaaaggggctca
taaaaatgaaaatatacttATTTATAACCAGCAGGAAATAGCGgttaaaa
taaacaaactaaaattcaaaatataggATTTTCGTAAAATCCTTGgggga
aaaaatctaaaacttcTATTTTcacaccaaaaaaaaattaacaagtaaag
atttgatttgaaaataaggaaaagaAGAAGATGATAGCGTCATCAATTTG
ACGTCATAACAAATATTTGATTCAGTGTTTCTGATATGTGCTGATTTAGC
ACTTTCACATAATAAGGGCGGCTTTTCGCTCCATCAATATTTTGCGATTT
Tcgtaaataattttgaaatggcagctgacttcttttttttttctggagag
aaaaaatccaaaagtAAATTATCACCTCCCTATGAAACTTCAACCATTTG
ATTCATCAGTGATAATATATTTTATCGTTTGTTTGACGCTCTTGACTTTT
CTTCTTTCCTCCGGGAAATAAGACCCCTTTCTACAAACATGTATAATTTT
ACAATGTAAAAAAACCGTTAAGTTTTTATATAACAGCTGATTATCAGAAA
CATTACATAATGACGTATTATCAGCCTCAGTTTCGTGACACACGAATTTG
GGGCAATTTTAACCCTTTAGAACGACACTTTCACAATTTATGTACTCGTA
CATATAATGCTGCATATATTTTcgaaaagcttttttgttttataCCTCTT
CAATAAACTTTCATAATTGAAGGGATGGATAtattaatcaaaattttctt
ttctttttctttaNCACAATTTATGTACTCGTACATATAATGCTGCATAT
ATTTTcgaaaagcttttttgttttataCCTCTTCAATAAACTTTCATAAT
TGAAGGGATGGATatattaatcaaaattttattttctttttctttatagt
ACACCACCCTTACGCCAATCACCACCTCGATGAGAATTACAATCCAACCG
CCACACCGCCCCACTATCTGCATTTACAACCGACACACCAACAACACAAC
AATGAAATGCCCGATATCGGTCAAAAACGAGTCTACAATAGCATCAATCA
CAATGCGCAAAGTCCCATCGATTTTTACATGACCAATAGCAATCATGAGA
ATAACTACATCCGACAACAAATGGCCTACGAGGCAATGTTCCACGGCCAT
CCGGCCATGAAGCGCCAAAGATACGACTCTCACGAAACGATAGAGCCAGA
ACTAAGTCGCGCGACACATAATATCCTTGAACGCCAAAGAAGAAACGACT
TGAAGTTACGCTTCAGTATTTTAAGAGACAATATACCAGAATTAGCCAGC
CATGAGAAAGcaccaaaaattcaaattttaagaaaaggaCTTGAGTATTT
GACCATCCTAAAAAGTGAAGAACAAAAATTAATAGCTGACAAAGAACTCG
AAAAACAAAGGAAGCTGATTTTAATGGAAAGGTTGAAGACGCTACGACAG
AGTAATCattaagaattttatttatttttttcagagatATATTTTAACTG
AAGGTCCCAATTAATCCTAACGTTCTTTGATTACAGTTTTAAGCCTTTAA
GGCTAATATGTTTTGCAAAGAAAATTTGCCCAGTAGAGCTACATCCTACT
CTTGTATATCCGACGCGGTGGGCAACCCAAACCACTTTCAAATCGAGCAA
GTACTTTGTCTTAGAActtctttgtaaaaagttttcgattggggctttat
tttatgattttttggcaatttcttcagacattcttttttttaaagatctt
aTATTATTGTATATGTTTGTACTATTTTTATTAAAGAGAGAAAACACAAT
TTTAAAAGTCAGTATATTATTAGGTTTATTTCGCCTTAAAATTTGGGgaa
ataacattttaaggctctatTTTCACGAGCTTATATTACAGTactgattt
ttttgaagatgtATTTAATATTTTACGCGAAGAGatattgaaatcatttt
tgtacATATTGTATCTTTTGTTATATTATTTTGATCTTagtttttacaga
aaaagatAGATTAAAGCAGTCACCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012634-exon-sc0000146-1491911889:269832..269853 | TCONS_00012634-exon-sc0000146-1491911889:269832..269853 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1510915933:269832..269853 | TCONS_00012634-exon-sc0000146-1510915933:269832..269853 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1575043694:269832..269853 | TCONS_00012634-exon-sc0000146-1575043694:269832..269853 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1491911889:270375..270727 | TCONS_00012634-exon-sc0000146-1491911889:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1510915933:270375..270727 | TCONS_00012634-exon-sc0000146-1510915933:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1575043694:270375..270727 | TCONS_00012634-exon-sc0000146-1575043694:270375..270727 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1491911889:271407..271466 | TCONS_00012634-exon-sc0000146-1491911889:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1510915933:271407..271466 | TCONS_00012634-exon-sc0000146-1510915933:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1575043694:271407..271466 | TCONS_00012634-exon-sc0000146-1575043694:271407..271466 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1491911889:273431..274561 | TCONS_00012634-exon-sc0000146-1491911889:273431..274561 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1510915933:273431..274561 | TCONS_00012634-exon-sc0000146-1510915933:273431..274561 | Clytia hemisphaerica | exon |
| TCONS_00012634-exon-sc0000146-1575043694:273431..274561 | TCONS_00012634-exon-sc0000146-1575043694:273431..274561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:269832..274561 + |
Blast
BLAST of TCONS_00012634 vs. Swiss-Prot (Human)
Match: MYC (Myc proto-oncogene protein OS=Homo sapiens GN=MYC PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.236e-19 Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 3
Query: 624 SNHENNYIRQQMAYEAMFHGHPAMKRQRYDSHETI-----------------EPELSRATHNILERQRRNDLKLRFSILRDNIPELASHEKAPKIQILRKGLEYLTILKSEEQKLIADKELEKQRKLILMERLKTLRQS 989
S H++NY A + +PA KR + DS + E + R THN+LERQRRN+LK F LRD IPEL ++EKAPK+ IL+K Y+ +++EEQKLI++++L ++R+ L +L+ LR S
Sbjct: 303 STHQHNY----AAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSPRSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLRNS 437
The following BLAST results are available for this feature:
|
