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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012638 ID=TCONS_00012638|Name=TCONS_00012638|organism=Clytia hemisphaerica|type=transcript|length=1790bp
TAAGTGTTTCCGTTCGAATTATTTAACGCATATATGAGGAATGACTTGAA
GGTACCTCATTTCATAAGTGACTTTGGAAAGGCTCTGCATATTGACTTTT
GGTTGGAGAGAACTAATTACACGCATAtatacaaagaaagaaaaaagaca
aatgATACATAATACGCAACGAAAATGTGGATGAACGTACTACTTCTTAT
ATTGGCGCTTGCCAGGTCACTTGTTAATTGCAGTGCTGGATTTCAGACAA
GTCCGGCTTGCCATCCGGGTATATTACGGTTATTTAGTTGGTGTGAACAA
TCGGAATGCAGTGATTGTACATGTTTATCGGCTAAACACGTTTGTAAACA
AATCTGCAACAAGCGGAACTGTAAATTATTGTTTTGTAGTTCACCACAAA
CCTGTTATCAGAGCGTTCTAGTAGAGTACGGTCGGCGGAAACCAGTTGTT
GATAAATTAGTATCGCATACACCGATCACACAGCAAGACTGTTCTCAGGC
TACTTGTAAATATATGAAAGCAGTTCGTTACAAGGATAAACCATCGCAAT
CTTTTCAAAGTTGTTCTGAAGGAAAATGTGGACATATTTATTCGACTGCT
GATATAGCAAAACAATTTTGTGGTGATTGTGATAAAATGACGTGTACAGG
GAAACACGCTAAAAACTGCACGCAACTTTGCGTTTTGGGTGAATGCAAAG
ATATGACTTGTAACGCCAAACATTGTAAACAATTATGCTCGCATCAAAGT
AAGTGTACATTATCGTGTGGTCCTAACACGGAAACATGTGACCAAACGTG
CTCACATTGGAGCACATGCACGATGAAATGGAAAGGGATCACGCGTGTGC
ATCAATGTAATGATTCTCATAATTGcactgaaatttcaaaaacagtACCT
CAGACCACGCAACCttccacaacaacaacatcaacaactacaactacaac
aactacaacaacaacaacaactactaCCAAATCTACAACTCTTAAAGTAG
TCACGACCAAAATTAAACTTCAAACTACAATGCCAACTGAACTTGATGAT
AACAATGTTATCCCTGGCGCCGAAGTCGAGCCATCAACGAACACACGTGT
CCCGGTTAATAATAAGGTTGAAATTGTTACGAGCCGTAATACGGGTACCC
GTGATAAATTCTCTTCCGGGTCACATAAACAAAGCAATATCTCAAGACTT
TTGTTTCTAATATTATGTGTGTTTTTATCACTACTAACCCTATAGCACTT
TATTAAAATTTATTAGTTTGCCTTTTATTAAGATTAATTTTAGAGTCATT
ATTTTacacaaaatatttcaagaaaaatgaaatttgtaaATTATCAAATA
TGTTGCGCTTTTGataataaattgattttaaagataTATGTTTTTTAAGG
GCCAAGATACTCAATATCTTAGAGATAAAATGGAAAATACAACAGTCTAA
TGAAATCGTGCCATTCGAGACCTCTGAAATGAttacataaaattttattt
atcttACATAAAAATATATTGTACATAATACTTAAAATAATTGTAAATAc
ctttttttctagaaaaactTTGTATATTGTAAAGCAAAAGATGTGTATAT
TAAATGGATATACAAGGAAGTATTGTCCTATTGCCGTGAATTTAATTAAT
GACAATGTGacaatatttgtaaaaaaattgtataaattacCCATTTTATG
TATGCCagatgaatatttttatattattttagatttaaagcagaatataa
ataaaacattatgataaatataaaatgataaataaaacaT Run BLAST on NCBI protein sequence of TCONS_00012638-protein >TCONS_00012638-protein ID=TCONS_00012638-protein|Name=TCONS_00012638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MWMNVLLLILALARSLVNCSAGFQTSPACHPGILRLFSWCEQSECSDCTC
LSAKHVCKQICNKRNCKLLFCSSPQTCYQSVLVEYGRRKPVVDKLVSHTP
ITQQDCSQATCKYMKAVRYKDKPSQSFQSCSEGKCGHIYSTADIAKQFCG
DCDKMTCTGKHAKNCTQLCVLGECKDMTCNAKHCKQLCSHQSKCTLSCGP
NTETCDQTCSHWSTCTMKWKGITRVHQCNDSHNCTEISKTVPQTTQPSTT
TTSTTTTTTTTTTTTTTTKSTTLKVVTTKIKLQTTMPTELDDNNVIPGAE
VEPSTNTRVPVNNKVEIVTSRNTGTRDKFSSGSHKQSNISRLLFLILCVF
LSLLTL Run BLAST on NCBI transcript from alignment at sc0000146:364289..366435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012638 ID=TCONS_00012638|Name=TCONS_00012638|organism=Clytia hemisphaerica|type=transcript|length=2147bp|location=Sequence derived from alignment at sc0000146:364289..366435+ (Clytia hemisphaerica)
TAAGTGTTTCCGTTCGAATTATTTAACGCATATATGAGGAATGACTTGAA
GGTACCTCATTTCATAAGTGACTTTGGAAAGGCTCTGCATATTGACTTTT
GGTTGGAGGTACACTGTTTTTTGCTGATATTCTGGTTATCTACAATATAT
GATTCAGAACATTGTTTcgacgtccatttaacgttggAAGGATGTAATGT
TATGGACACGTAATTggcgtttttcttttttgacgttttggcGTTAGATG
AGGGTGTATAATACCTTTCACTTAAGAAAATTTCCACTTGTTTTACCTTT
CTGTATCCTCAAATGAAACAACAGATTATAGAGGTCAAATACTTTTCTCT
AGTGTTATATTGGCTGCGAGTATTTGGTTACATTTTAATGACCTAACCTG
CATCAAATTATGCCTGTTACCACTCAAATTGtcaactaattttttcaaat
ttctgttTCGTTTAGAGAACTAATTACACGCATAtatacaaagaaagaaa
aaagacaaatgATACATAATACGCAACGAAAATGTGGATGAACGTACTAC
TTCTTATATTGGCGCTTGCCAGGTCACTTGTTAATTGCAGTGCTGGATTT
CAGACAAGTCCGGCTTGCCATCCGGGTATATTACGGTTATTTAGTTGGTG
TGAACAATCGGAATGCAGTGATTGTACATGTTTATCGGCTAAACACGTTT
GTAAACAAATCTGCAACAAGCGGAACTGTAAATTATTGTTTTGTAGTTCA
CCACAAACCTGTTATCAGAGCGTTCTAGTAGAGTACGGTCGGCGGAAACC
AGTTGTTGATAAATTAGTATCGCATACACCGATCACACAGCAAGACTGTT
CTCAGGCTACTTGTAAATATATGAAAGCAGTTCGTTACAAGGATAAACCA
TCGCAATCTTTTCAAAGTTGTTCTGAAGGAAAATGTGGACATATTTATTC
GACTGCTGATATAGCAAAACAATTTTGTGGTGATTGTGATAAAATGACGT
GTACAGGGAAACACGCTAAAAACTGCACGCAACTTTGCGTTTTGGGTGAA
TGCAAAGATATGACTTGTAACGCCAAACATTGTAAACAATTATGCTCGCA
TCAAAGTAAGTGTACATTATCGTGTGGTCCTAACACGGAAACATGTGACC
AAACGTGCTCACATTGGAGCACATGCACGATGAAATGGAAAGGGATCACG
CGTGTGCATCAATGTAATGATTCTCATAATTGcactgaaatttcaaaaac
agtACCTCAGACCACGCAACCttccacaacaacaacatcaacaactacaa
ctacaacaactacaacaacaacaacaactactaCCAAATCTACAACTCTT
AAAGTAGTCACGACCAAAATTAAACTTCAAACTACAATGCCAACTGAACT
TGATGATAACAATGTTATCCCTGGCGCCGAAGTCGAGCCATCAACGAACA
CACGTGTCCCGGTTAATAATAAGGTTGAAATTGTTACGAGCCGTAATACG
GGTACCCGTGATAAATTCTCTTCCGGGTCACATAAACAAAGCAATATCTC
AAGACTTTTGTTTCTAATATTATGTGTGTTTTTATCACTACTAACCCTAT
AGCACTTTATTAAAATTTATTAGTTTGCCTTTTATTAAGATTAATTTTAG
AGTCATTATTTTacacaaaatatttcaagaaaaatgaaatttgtaaATTA
TCAAATATGTTGCGCTTTTGataataaattgattttaaagataTATGTTT
TTTAAGGGCCAAGATACTCAATATCTTAGAGATAAAATGGAAAATACAAC
AGTCTAATGAAATCGTGCCATTCGAGACCTCTGAAATGAttacataaaat
tttatttatcttACATAAAAATATATTGTACATAATACTTAAAATAATTG
TAAATAcctttttttctagaaaaactTTGTATATTGTAAAGCAAAAGATG
TGTATATTAAATGGATATACAAGGAAGTATTGTCCTATTGCCGTGAATTT
AATTAATGACAATGTGacaatatttgtaaaaaaattgtataaattacCCA
TTTTATGTATGCCagatgaatatttttatattattttagatttaaagcag
aatataaataaaacattatgataaatataaaatgataaataaaacaT Coding sequence (CDS) from alignment at sc0000146:364289..366435+ >TCONS_00012638 ID=TCONS_00012638|Name=TCONS_00012638|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000146:364289..366435+ (Clytia hemisphaerica)
ATGTGGATGAACGTACTACTTCTTATATTGGCGCTTGCCAGGTCACTTGT
TAATTGCAGTGCTGGATTTCAGACAAGTCCGGCTTGCCATCCGGGTATAT
TACGGTTATTTAGTTGGTGTGAACAATCGGAATGCAGTGATTGTACATGT
TTATCGGCTAAACACGTTTGTAAACAAATCTGCAACAAGCGGAACTGTAA
ATTATTGTTTTGTAGTTCACCACAAACCTGTTATCAGAGCGTTCTAGTAG
AGTACGGTCGGCGGAAACCAGTTGTTGATAAATTAGTATCGCATACACCG
ATCACACAGCAAGACTGTTCTCAGGCTACTTGTAAATATATGAAAGCAGT
TCGTTACAAGGATAAACCATCGCAATCTTTTCAAAGTTGTTCTGAAGGAA
AATGTGGACATATTTATTCGACTGCTGATATAGCAAAACAATTTTGTGGT
GATTGTGATAAAATGACGTGTACAGGGAAACACGCTAAAAACTGCACGCA
ACTTTGCGTTTTGGGTGAATGCAAAGATATGACTTGTAACGCCAAACATT
GTAAACAATTATGCTCGCATCAAAGTAAGTGTACATTATCGTGTGGTCCT
AACACGGAAACATGTGACCAAACGTGCTCACATTGGAGCACATGCACGAT
GAAATGGAAAGGGATCACGCGTGTGCATCAATGTAATGATTCTCATAATT
GcactgaaatttcaaaaacagtACCTCAGACCACGCAACCttccacaaca
acaacatcaacaactacaactacaacaactacaacaacaacaacaactac
taCCAAATCTACAACTCTTAAAGTAGTCACGACCAAAATTAAACTTCAAA
CTACAATGCCAACTGAACTTGATGATAACAATGTTATCCCTGGCGCCGAA
GTCGAGCCATCAACGAACACACGTGTCCCGGTTAATAATAAGGTTGAAAT
TGTTACGAGCCGTAATACGGGTACCCGTGATAAATTCTCTTCCGGGTCAC
ATAAACAAAGCAATATCTCAAGACTTTTGTTTCTAATATTATGTGTGTTT
TTATCACTACTAACCCTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012638-exon-sc0000146-1491911889:364289..364396 | TCONS_00012638-exon-sc0000146-1491911889:364289..364396 | Clytia hemisphaerica | exon |
| TCONS_00012638-exon-sc0000146-1510915933:364289..364396 | TCONS_00012638-exon-sc0000146-1510915933:364289..364396 | Clytia hemisphaerica | exon |
| TCONS_00012638-exon-sc0000146-1575043694:364289..364396 | TCONS_00012638-exon-sc0000146-1575043694:364289..364396 | Clytia hemisphaerica | exon |
| TCONS_00012638-exon-sc0000146-1491911889:364754..366435 | TCONS_00012638-exon-sc0000146-1491911889:364754..366435 | Clytia hemisphaerica | exon |
| TCONS_00012638-exon-sc0000146-1510915933:364754..366435 | TCONS_00012638-exon-sc0000146-1510915933:364754..366435 | Clytia hemisphaerica | exon |
| TCONS_00012638-exon-sc0000146-1575043694:364754..366435 | TCONS_00012638-exon-sc0000146-1575043694:364754..366435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:364289..366435 + |
Blast
The following BLAST results are available for this feature:
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