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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012649 ID=TCONS_00012649|Name=TCONS_00012649|organism=Clytia hemisphaerica|type=transcript|length=2432bpRun BLAST on NCBI transcript from alignment at sc0000146:195267..198444- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012649 ID=TCONS_00012649|Name=TCONS_00012649|organism=Clytia hemisphaerica|type=transcript|length=3178bp|location=Sequence derived from alignment at sc0000146:195267..198444- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012649 vs. Swiss-Prot (Human)
Match: ZFP62 (Zinc finger protein 62 homolog OS=Homo sapiens GN=ZFP62 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 1.561e-27 Identity = 83/256 (32.42%), Postives = 129/256 (50.39%), Query Frame = -3
Query: 1636 HQCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSFRN---LVNHMRSHEHKRKDSREVCKICHKSFISLNGHMKKHLNDR 2391
H+C +C FS L +H+T E + CD C + F+N A K H RR K + C +C ++ +++LK H HL + +KC YC++ F+ ++ L+ H +H +EKPF C ECGK F +K H +H ER +C CG Y +L++L H K H + D+C F T++ + NH +KP KC++C KSF L H R H ++ + C+ ++ SL H + H +R
Sbjct: 421 HECKECGKSFSYNSLLLQHRTIHTGERP-YVCDVCGKTFRNNAGLKVH-RRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQH-KRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINH-KSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPY-KCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGER 671 HSP 2 Score: 100.908 bits (250), Expect = 1.028e-21 Identity = 76/252 (30.16%), Postives = 121/252 (48.02%), Query Frame = -3
Query: 1666 HFVSGLHQCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSFRN---LVNHMRSHEHKRKDSREVCKICHKSFISLN 2409
HF ++C++C F+ L +HK E + CD+C + F+N + H+R K + C +C +F+ + L VH H + +C+ C + FS N+ L H ++H E+P+VC CGKTF +K H LH E+ +C+ CG Y + ++L H K H + C F ++ H ++KP C+ C K+FRN L H R H +R C+ C K++ISL+
Sbjct: 331 HFGDKPYKCDECEKSFNYSSLLIQHKVIHTGE-KPYECDECGKAFRNSSGLIVHKRIHTG-EKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQH-RTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNH-KGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPF-GCDECGKAFRNNSGLKVHKRIHTGERPYK---CEECGKAYISLS 574 HSP 3 Score: 92.8189 bits (229), Expect = 3.482e-19 Identity = 73/251 (29.08%), Postives = 118/251 (47.01%), Query Frame = -3
Query: 1663 VSGLHQCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSFRN---LVNHMRSHEHKRKDSREVCKICHKSFISLNG 2403
V LH+C++C F L +HK E + CD C F++ ++ + H+R K + C C ++ ++L H TH ++ KC C + F+ ++ L H +H EKP+ C ECGK F ++ H +H E+ +C+ CG T+ + L +H KR H+ + D+C F T + + NH KP KC+ C KSF L+ H H ++ C C K+F + +G
Sbjct: 137 VKKLHKCDECGKSFKYNSRLVQHKIMHTGE-KRYECDDCGGTFRSSSSLRVHKRIHTG-EKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQH-KRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVH-KRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPY-KCDECEKSFNYSSLLIQHKVIHTGEKPYE---CDECGKAFRNSSG 379 HSP 4 Score: 91.2781 bits (225), Expect = 1.082e-18 Identity = 71/258 (27.52%), Postives = 120/258 (46.51%), Query Frame = -3
Query: 1636 QCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSFRN---LVNHMRSHEHKRKDSREVCKICHKSF---ISLNGHMKKHLNDR 2388
+C++C F+ L++HK E + C +C + F+N + + H+R K + C IC +F+ + L+VH + H + ++C C + F L NH S+H +KP+ C EC K+F+ + +H +H E+ +C+ CG + + L +H KR H+ + D C F + H +H K +C C KSF L+ H H +R VC +C K+F L H + H ++
Sbjct: 226 KCDECGKSFNYSSVLDQHKRIHTGE-KPYECGECGKAFRNSSGLRVHKRIHTG-EKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNH-KSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVH-KRIHTGEKPYKCDVCGKAFSYSSGLAVHKS-IHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERP---YVCDVCGKTFRNNAGLKVHRRLHTGEK 475 HSP 5 Score: 83.1889 bits (204), Expect = 3.457e-16 Identity = 69/244 (28.28%), Postives = 111/244 (45.49%), Query Frame = -3
Query: 1678 GLHQCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSF---RNLVNHMRSHEHKRKDSREVCKICHKSF 2397
G Q + ++ + Y + KT +L +CD+C + FK + +H+ K + C C +F ++L+VH + H + +KC+ C + + + L NH S H EK C ECGK+F+ + +H +H E+ +C CG + + L +H KR H+ + D C F ++ H +KP E C+ C K+F R L+NH H D C C KSF
Sbjct: 112 GSEQGKRVENINGTSYPSLQQKTNAVKKL--HKCDECGKSFKYNSRLVQHKIMHTG-EKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINH-KSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVH-KRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYE-CDECGKAFITCRTLLNHKSIH---FGDKPYKCDECEKSF 346 HSP 6 Score: 83.1889 bits (204), Expect = 3.578e-16 Identity = 69/244 (28.28%), Postives = 109/244 (44.67%), Query Frame = -3
Query: 1672 HQCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLHKERSA-QCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSFRN---LVNHMRSHEHKRKDSREVCKICHKSFIS 2391
++C +C + S L HK+ V P F+CD+C + F H++ K + C +C SF + L H + H + ++C C+++F N+ LK H +H E+P+ C CGK + S+ H S H R+ C+ CG + + L H KR H + +C F + H +KP C+ C K+FRN L H R H ++ C C K++IS
Sbjct: 561 YKCEECGKAYISLSSLINHKS-VHPGEKPFKCDECEKAFITYRTLTNHKKVHLG-EKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVH-KRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTPHTCDECGKAFFSSRTLISH-KRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYV-CDRCGKAFRNSSGLTVHKRIHTGEKPYE---CDECGKAYIS 796 HSP 7 Score: 82.0333 bits (201), Expect = 8.217e-16 Identity = 69/241 (28.63%), Postives = 110/241 (45.64%), Query Frame = -3
Query: 1678 QCNKCLSVFSSEYYLERHKTYVCPELSEFRCDKCSRLFKNIANFKRHQRRGCDLAKTFHCIICSASFTQKANLKVHLKTHLNIRDFKCQYCDRLFSRNTFLKNHIMSVHDKEKPFVCHECGKTFSRMDSMKRHASLH-KERSAQCNYCGMTYHTLNNLNMHVKRSHSNNEEMLEDKCRLCFGTFKDIKNHMFYLHQKKPLEKCNICHKSF---RNLVNHMRSHEHKRKDSREVCKICHKSF 2388
+C++C F + L HK E ++CD C + F N + RR K + C C F ++LKVH + H R ++C C + + ++ L NH S H P C ECGK F ++ H +H E+ +C CG ++ + L+ H KR H+ + + D+C F + H +KP E C+ C K++ +L+NH H+ K+ + E C KSF
Sbjct: 590 KCDECEKAFITYRTLTNHKKVHLGE-KPYKCDVCEKSF-NYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINH-KSTHPGRTPHTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQH-KRIHTGEKPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYE-CDECGKAYISHSSLINHKSVHQGKQPYNCE----CGKSF 821 The following BLAST results are available for this feature:
BLAST of TCONS_00012649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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