TCONS_00012650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012650
Unique NameTCONS_00012650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012650 ID=TCONS_00012650|Name=TCONS_00012650|organism=Clytia hemisphaerica|type=transcript|length=2752bp
CAAGGATTCTTTCGTTTCATTATGAAAATTCTAAACAACAttcttatcaa
ttattttgcaCATTGGACTTTGAAAATGAATGAACAAAAACactcaaagt
gaaaaaaaaatattaaactggAATCAAAAGAGTTAGTTTTCAGGGATATA
TATTGATTCTTATTGAAAATAATCGATCTTgtttaaaaaataccaaaaag
attaaaaaaccTAGTCTACTTTACATAAACAATCATATTCattctattta
tttctttttacttttgaatgtttttagaGGGTCATTGTTATGTTTTGGCT
TCTTTTTCTTGTTATCGTGGAAAGGGATATGTTGCTTCCTTTTACGCTTT
GGTTTGAGCATGACTTGTTTTAATGAATCAGGTACAAGATAATCAGGAAC
ATTTTTCATGTGAGGTCGTTGTTCAGTTGGTGCAAGTATTTTGTCATGGC
GCAAGACTTTCAGATCTGTTGGGTTATCctcaaaatatgttttgagTTTG
GATGAATTGAAGATTTCACCTTTAATTTCCTTCAAACGAGCATCTTTAAC
TTTCAATTTAGTGACATTATTAAAAGCATCATTTACCCTGTACCTTAATC
cttcaatttcattaattttgaaattatatggCTTCAAATCTGCACCAGAG
CCATCTTTTATTTTAGCCTCCAGCTTTGTAAGATTAGTTTGATCAGTTGG
GCTTGCTACAAAGGATAAGGCTGTCCCAGTGTTATCACCACGTGCTGTTC
TTCCTACCCGATGGATATAGGCATCTGCAGTTGTTGGAAAATCTAAATTT
ATCACATTATCAACATCTTGAAAGTCAATCCCCCTAGATACATTGTACTC
CTTGTCAGTCGTCTTCTTAGACTTCTTTGCTTTTGTTTTCTCAGTATCTA
TGGAAACAGATTCATCTGTGGCAATGACAGTGTCATAAACACCTTTGTTA
AACTCATCAACAATATGGATTCTTGAACTTTGGGGAAGTTCAGAGTTCAA
AACACAAGATTTGATGTAAAATTGCTCAAAGAATAGTTTCAAGCGGTAAC
ATTTGTCAATTGAGTTTACAAAAATCAAATTCTTTCCTTGGATCAAATTC
AGCTTAAACAAAGAGTAAGCAAGTAAAAATTTGTCATCAGCTTCACACTT
GACAATAAACTGGTTCAACTTCCCCTCTTCTGGGACGTCTGATTGCTGAA
GTTTCAACACAACTGGATCTcgtaaaatttgacttttcaaATGTTCTACA
TCCGAGCCAATAGTGGCAGACACCAAGAGTGCCTGGTAGATCTTGGGTAA
ATTTTTGACCAGTGTattcaaatcattttcataTCCAAAAGAAAGCATCA
AATCTGCTTCATCGATGACAAGATAATCCATAGAAGACTTCATATCGAAT
GTCTTATTGTTAATATGAGCAAGGATTTTTGCAGGTGTTCCTATCAAAAC
ATCAGCAGATGGAATGATCGATCCTACATTTTGAACAGAAGAGTTCCCGA
CATCAAGGACTTTGACAGTTCTTGAACAACTAGTTGTCAACTCCAAAGCA
TTTCTATAAGCTTGCTTGCTCAGTTCTTTTGATGGTACCAATACTACAGC
AACTTTCTTCGGGGTAGTTTTGTCAACAActcttgattttttcaaaatat
tttgaaggatTGGAATAAGATATGAAGCTGTCTTTCCTGACCCTGTCTTT
GCTCTTACGATCAAATCTTTACCTTCAAGGGCGAGTGGAACTGTTCGTCT
TTGAACTTCAGTAGGTTTCGACCATCCAAGTTTAGAAATTGCTTTTAAAA
GTCGGTCATCAAGATCAAAACTTGCGAAGGAATCCATTTTCGTTCAACAG
CAACAGCCTGCTAGCCACACACGTTTTTTGATCGTGTAAATTTTTGACGG
GAAGGGCCTTTTTACATCAATAAGTTTCAATTACTGTGTAAAGTAGGTCT
TGCTCTTCTCCACTTAAATAGGGAAAGTATagcaaaaatatgaattttct
ttgaatatcATTTGCGGGGAAGTATACAAATTCGTGTTTATATCACGTGG
GTTGATGAAAGCGAAAGTAGAATTCtaaatccaagatggcgccgAATAAC
AAAGTTGATGTCAAAGAAAGATTAAAAGAAGAGCATAAAGAATGGGAAAA
ATCGCATCCAAAGGATTTTAAAGCTAACCCTGGGCAAAATAACGGAAAGA
TCAATTGGTTACAGTGGAATTGCGaaaTTCCTGGAAAGCTAAAGACTCCA
TGGCAAGGAGGTGTATACAAACTATGCATAACTTTCACTGAAGAATATCC
ATATCAACCACCGCTATGTGTTTTTGATCCACCAATCCTTCATCCGAATA
TCTATCCCTCAGGAAAAGTATCATTATCCCTTTTGGAAAAAGACTGGGTA
CCACAAATAACTATCAAacagATCTTATTGGGCATACAAATTTTGCTTGA
CGATCCCAATTTTAACAATCCAGCTCAAGCAGAAGCTTTCGTCATTCACA
gCCAAGGGAAACATTTATACGATGAGAAAATCAAACAACAAGCAAAGGAA
ATGAGTCCATCTAGGTAGCAGTGCACTGTTTGGCCACCAACAGCACAATA
CATTATAGggacATCTactaaaatcttcatttttagtcCCCTATTTGTTT
TAAACAATAACTTTTTACTACACCTGACTTGTATATAATATAAAAGCCTG
TGAAATTATTCATCttgataagaaaatttaaacgGATTGGATAAAAATTG
AC
Run BLAST on NCBI

transcript from alignment at sc0000146:278643..285899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012650 ID=TCONS_00012650|Name=TCONS_00012650|organism=Clytia hemisphaerica|type=transcript|length=7257bp|location=Sequence derived from alignment at sc0000146:278643..285899- (Clytia hemisphaerica)
CAAGGATTCTTTCGTTTCATTATGAAAATTCTAAACAACATTCTTATCAA
TTATTTTGCACATTGGACTTTGAAAATGAATGAACAAAAACACTCAAAGT
GAAAAAAAAATATTAAACTGGAATCAAAAGAGTTAGTTTTCAGGGATATA
TATTGATTCTTATTGAAAATAATCGATCTTGTTTAAAAAATACCAAAAAG
ATTAAAAAACCTAGTCTACTTTACATAAACAATCATATTCATTCTATTTA
TTTCTTTTTACTTTTGAATGTTTTTAGAGGGTCATTGTTATGTTTTGGCT
TCTTTTTCTTGTTATCGTGGAAAGGGATATGTTGCTTCCTTTTACGCTTT
GGTTTGAGCATGACTTGTTTTAATGAATCAGGTACAAGATAATCAGGAAC
ATTTTTCATGTGAGGTCGTTGTTCAGTTGGTGCAAGTATTTTGTCATGGC
GCAAGACTTTCAGATCTGTTGGGTTATCCTCAAAATATGTTTTGAGTTTG
GATGAATTGAAGATTTCACCTTTAATTTCCTTCAAACGAGCATCTTTAAC
TTTCAATTTAGTGACATTATTAAAAGCATCATTTACCCTGTACCTTAATC
CTTCAATTTCATTAATTTTGAAATTATATGGCTTCAAATCTGCACCAGAG
CCATCTTTTATTTTAGCCTCCAGCTTTGTAAGATTAGTTTGATCAGTTGG
GCTTGCTACAAAGGATAAGGCTGTCCCAGTGTTATCACCACGTGCTGTTC
TTCCTACCCGATGGATATAGGCATCTGCAGTTGTTGGAAAATCTAAATTT
ATCACATTATCAACATCTTGAAAGTCAATCCCCCTAGATACATTGTACTC
CTTGTCAGTCGTCTTCTTAGACTTCTTTGCTTTTGTTTTCTCAGTATCTA
TGGAAACAGATTCATCTGTGGCAATGACAGTGTCATAAACACCTTTGTTA
AACTCATCAACAATATGGATTCTTGAACTTTGGGGAAGTTCAGAGTTCAA
AACACAAGATTTGATGTAAAATTGCTCAAAGAATAGTTTCAAGCGGTAAC
ATTTGTCAATTGAGTTTACAAAAATCAAATTCTTTCCTTGGATCAAATTC
AGCTTAAACAAAGAGTAAGCAAGTAAAAATTTGTCATCAGCTTCACACTT
GACAATAAACTGGTTCAACTTCCCCTCTTCTGGGACGTCTGATTGCTGAA
GTTTCAACACAACTGGATCTCGTAAAATTTGACTTTTCAAATGTTCTACA
TCCGAGCCAATAGTGGCAGACACCAAGAGTGCCTGGTAGATCTTGGGTAA
ATTTTTGACCAGTGTATTCAAATCATTTTCATATCCAAAAGAAAGCATCA
AATCTGCTTCATCGATGACAAGATAATCCATAGAAGACTTCATATCGAAT
GTCTTATTGTTAATATGAGCAAGGATTTTTGCAGGTGTTCCTATCAAAAC
ATCAGCAGATGGAATGATCGATCCTACATTTTGAACAGAAGAGTTCCCGA
CATCAAGGACTTTGACAGTTCTTGAACAACTAGTTGTCAACTCCAAAGCA
TTTCTATAAGCTTGCTTGCTCAGTTCTTTTGATGGTACCAATACTACAGC
AACTTTCTTCGGGGTAGTTTTGTCAACAACTCTTGATTTTTTCAAAATAT
TTTGAAGGATTGGAATAAGATATGAAGCTGTCTTTCCTGACCCTGTCTTT
GCTCTTACGATCAAATCTTTACCTTCAAGGGCGAGTGGAACTGTTCGTCT
TTGAACTTCAGTAGGTTTCGACCATCCAAGTTTAGAAATTGCTTTTAAAA
GTCGGTCATCAAGATCAAAACTTGCGAAGGAATCCATTTTCGTTCAACAG
CAACAGCCTGCTAGCCACACACGTTTTTTGATCGTGTAAATTTTTGACGG
GAAGGGCCTTTTTACATCAATAAGTTTCAATTACTGTGTAAAGTAGGTCT
TGCTCTTCTCCACTTAAATAGGGAAAGTATAGCAAAAATATGAATTTTCT
TTGAATATCATTTGCGGGGAAGTATACAAATTCGTGTTTATATCACGTGG
GTTGATGAAAGCGAAAGTAGAATTCTAAATCCAAGATGGCGCCGAATAAC
AAAGTTGATGTCAAAGAAAGATTAAAAGAAGAGCATAAAGAATGGGAAAA
ATCGCATCCAAAGGTATATTTTACTTTTAAATTTTGATATCAATGTACTA
TTGCTTATATTTCACACAAAAATGTGCTATCTCGCTGTTTTCCACACTAA
ATTTGGCCAAAAACTATAGAAACATCCATGCTTGATATTTTGTTAAAAAA
TTGCCAAGCAATTAAAAGAATATAGAAAAGATCAAATAATTGTACCCTTA
ACCAGTTAACAGCAATCACAATCGATAGAAAGTTTTGGGGCATTTAAATT
TTTTAATTATGGATTAGGCGGTACTTCCATGGATCCAGGTTCTTGAGTGT
CCAGGGATTTGAACAATCATATTTATTGAGACTTACCTTGGACTGAACTT
TGAAGGAAGAACGTCAGAAAAAAAAACCTATTGACCAAGACATGTATCGT
CAACCTGCTCTTGGGACTATCTGTGGGACTATCTGACAAAACATGGGAGG
CAATTCGGCCACCATTTCACCGAACCTCCAAAGTCATTTGATTTGAGTTA
ATGAACGGCGTATTAAAAAATACACAATTTCTTTGTCGCACTGAGTAGGC
TTTTAAATCGAAATATGAAAAAAATCAGAAGTGGAACACACGCAAATGTC
TGTAACGAATTAGAACAAATTAGTGGCAAAACGATGGGGCATTTGACGTC
ACTCGCTCGGGAAGTTACTTATTTTGGCGGAAACTAGTAATTTTGGCAAA
TTTGGCAAATTTAGAAAAAATTCGCCCAAATTAGTTCCCGCCAAAATTAA
ATAATTTACTTACTCGCCAAAATAAGTTCTTGCCGAAATTAATTTTTTGG
TTTTTGCCTAATAACTTCTTGAGTTCACAAAAAAAGCTTCAAATATATAA
GGCAAAATAGAACAGATTGACATTGTCACTTGCCAAAATTAGTTCCGGCC
GAAATTAAAAAAATTCATCAATCACCAAAATAAGTTCTCGCCAAAATTAA
AAATTTTCAGGATTTTTGCCACTTGTCAAAATAAGTTCCTGCCAAAATAA
GTTCCCTTAAGGTACACACTCGTTATTTGTTAGTCCCATCGGGTGATATG
CGATTAGGCGGTGGGTATTCTCTAATTCTCCAATCGGTGTCCGGTCATTT
TGAATGAAAACAAAAAAAGTTAAAAAGGGCGCACTATCAGTGAAAGTTGT
CGTGACATATTATGACAGAAAGTATGATTGATAAACTTGGTGTGGAGTTA
TCAAAACAAATTTCCGTCAACTGCTCTAACTTGGGATGATTGATATTCTG
GCCTGTATTTTCACTTACTGTTAAATCTCTTTGACAACAAATTTGTTTTG
ATAATTCTGAGAAAGGGTGAAATTGTTTAAAGAGAGTTGCCAAAATAAGA
CACGGAAGTCACAATACTGCTATACTGAGAATTATTTCTGAGCTCAAATT
TTGATTTTGAAATAAAGTCATATCTGGATTGTCTGGTCAGTATCAGGAAG
GTGGAGGGTGCTGCAATATTATTAGAAGGAGAGAGAATGCAGGAGAATGA
GGAAATTTCAAATAATTTTGTTTCTTTAAGGATTTTAAAGCTAACCCTGG
GCAAAATAACGGAAAGATCAATTGGTTACAGTGGAATTGCGGTAAGTAAC
ATTATTCATCATAAGTCAAGAAAGATGATTTAAAATAGATAAAAACCAGG
CAAAAGAAGGACATTTTGTTATATTTTACTTAACAGAGAATTTTTTTTTC
TTTCTTTAATTGAATAGAATATATATTTTTTCTTTCTTAGAAATTCCTGG
AAAGCTAAAGGTAACATTCTTTGCATGCAACTTCTTACATCATTGATAAA
TCTTTTATTGGTTTTATTTTAATTATTGATGACAGTGTCATCAAATGCTT
ACCAAGTTAAAAGATATAATTATGATTACAAACTGTATGGACTTGATGTT
ATTATATACAAGAAAAATAAATAGTCTGATATTTTAAACACTTTTATACA
TTTCAACAACATTTTAATGTTACTTTTTACTTTGTAATTTTTGTATCTAT
TGTTTTTAGACTCCATGGCAAGGAGGTGTATACAAACTATGCATAACTTT
CACTGAAGAATATCCATATCAACCACCGCTATGTAATTAAGTTTATTGAA
TAGTTTTTTAAGGCTAGGGGAGATCTGAAATTTTCATCTTGACCGACCCC
TCTAATTTAGATTGTCTCTTCAAAACAAGTTTGAGATTGCTCTTTCCTAA
CAAATATTATTATTGGTTGTTGGTTCTTGGTTGTGTTACATAATGTTACA
TACCGTTAAAAATTGAATAAAAATTTTTGGAAATGGATTCTCTTTGTTTA
GTTCATTTTTTTGGATGTGTTCCATCTACATTAGCTACTTTAAGGGAAGA
AATTTTAGTGGAACAAATTTTTGCAGAATTTAATTTTGTAGTTTTTCGAC
AAATTCGCAAAATTAAATTCCGCGAAACACAAATATTCTCATGATTTAAA
AAGTCACCTATAAAATTGGCCTTTTAGGGCAAAATAGGCCATATTTCAAA
CAAAAAATCCTTTCAATGGCGAAATTGAATTACGCAAAACTTCAGAATTT
TGAGCTGTGAACCACAAAATTAAATTCCGCAAAGATTTCTTCCCTTAATG
TAGATTAGATTTTAAATCACTTTTGATAAACTTGCTAAAAACTTGCTAAA
AACTTGCTGTCTCTTTTGACAGTGTTACCTATTCTTGTGATAATAACCGA
AATCTTTGATTTAACTCGATCTCTACAGGTGTTTTTGATCCACCAATCCT
TCATCCGAATATCTATCCCTCAGGAAAAGTATCATTATCCCTTTTGGAAA
AAGACTGGGTACCACAAATAACTATCAAACAGGTTTGTTTTTGTTTATAA
TAATTTTGATTTGATATGATTGCAAGTCATTCATTAGGTTACGTCGTATC
TTCCTTCGTTCCCAGTGAAAATAACAGTGCCTATAGAGTTGTCTATCCTG
AAGACGAGTCATTCAAAAAATTAGAGATTCAGCAAAGTTTGTTTGCTAGA
GCATTGATTGATATTGAATTTCGTATAGAGAGAATTAATCATATTTACAT
TTCATCACTAGATCTTATTGGGCATACAAATTTTGCTTGACGATCCCAAT
TTTAACAATCCAGCTCAAGCAGAAGCTTTCGTCATTCACAGGTAATATAT
ATTTTTATATACTGTAATATTCGATAGAAGACAGTGTAACTCATTTCCAA
GTCGACACCAACTTTAATGTCTAGGTTTAAAATAATTATGCCTTTTGTTA
TAAGCTTTGGGTGAATACATTTTTCATTTTCAGCCAAATGATATGCGTAT
TGAATGATGCCAATGTAATTGAGTACATTGCACAAATTATGCTTCTTTGT
TGTATGAGAAATGGAAAGAAAATTCTAAGAACTAAGCATGTAATACTCGA
GTTTTTCCTAGATTTGGGCCTCAATATATTTATAATAGTTCTAACTAACT
TTTCTTCGTTCCTTAGCCAAGGGAAACATTTATACGATGAGAAAATCAAA
CAACAAGCAAAGGAAATGAGTCCATCTAGGTAGCAGTGCACTGTTTGGCC
ACCAACAGCACAATACATTATAGGTATTACAACTTTTTTTCAATTTTGTA
TCTTTTCATTTTCAGTTTTATTAATTCTTCTTTTTGTAAATAAATAAAGC
CCACAAACCAAGCAACACCACAACGATTTATTTCACTAAACCATCCATCA
TCATTTGGCCGGAGAGAACTCCTTAGTATCTCAAAAACAAAATTTAAATT
CGGACAGAGAAGGACCTTTACAAAAATAATTGAATGAAAGCGAGATCAAG
TTTGTTGACTAAATGTCAGGTGCCTGGAATTTAAATCTTTTAAATCAATT
CGAAAGAGATTGCCCAACGTTAATTTTGATCCCTTGATACTAGAAATTGT
GGTCAAATTTTTGGGACTTTGTCTTCTCTTTTTTGACCCTATCACACCTG
CCTCGCCTTTCAAATTGTATTATGGCAAGTTGAAGAAATTTAACTCAATC
TTAGAACAGGGTGCTCGTAAAAAATACTGCGGAATAGAATATGTACTATA
CTCTTTTGTGCTTAATTGTAGGGGGAGTCACTTTGCAATTGTTCGGAAAA
AATCACCCCAATATAATAGTATTTCATAATGACCCCCCCCCCCATTTTAT
GAAATTTTCCTTAAAAAGTGCCAAAACCTTCATTTTCTTAGGGATTTTTG
GGAAAATCACGTAGTCCCAAAATCACTTAACATTAACCCCCTCCCCATTT
TATGGATTTTCTCCCAGAGTACCAAACCCCTGCTTATTCCACCCTTACAA
TTAAGCACAAAGGAGTACATGAAATATTATGCTTTCAAAGGTTACATGCA
TTATGTGGATTTTTCATGTAATTTCCTTCGCTTTTTTCCGGACGACTGTG
TGCAAAGAAGGGTTTTGCTATTTACAGTGACCTATTTTTATTTCCTCTTT
GTTCAAAGTATAATGATAAAAATAACAACATCCTGTTTTCCCGCCTTTTT
CATTTAAGAAGAGAATGGGCTGATCTCTTGGAAATGAAGGTTTTGACCTG
AAGTAGGTCTTGTGCAACATCTGTTGTGTGTTCTTCATTCATTCAATAGT
TTTCTTTGTTATTTTTTTACAAACTGTATAAAAGTAAAATAAATCTTTAA
GTTTTTGAAACCTTTTGCTCTATAGCCTTTTGTTTTTTCTTTGCTTTGTT
TTCCTCTTTATTTGACGTCGAGATTCGGTGCCAGATCCCTGGAAAGATAT
CTTCATGGGAACTTCAATGTAAAAAGACTACACCCCTCTAAATGATAACC
GTCAAAATATGAGGGTCATATTAAAACTCCTCTTTTGTTTCAAAGAAACT
TAATGATATTTCCTTATTTTAAAAGAGAGTGTTTTTGCATTTATTTCACT
TATATATCAATTTTTCATAAATTTACAATAAATTTCATTATACTATTTCT
TTTTTTTTTTCAGGGACATCTACTAAAATCTTCATTTTTAGTCCCCTATT
TGTTTTAAACAATAACTTTTTACTACACCTGACTTGTATATAATATAAAA
GCCTGTGAAATTATTCATCTTGATAAGAAAATTTAAACGGATTGGATAAA
AATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007096XLOC_007096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012650-exon-sc0000146-1575043694:283737..285899TCONS_00012650-exon-sc0000146-1575043694:283737..285899Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:282159..282219TCONS_00012650-exon-sc0000146-1575043694:282159..282219Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:281990..282009TCONS_00012650-exon-sc0000146-1575043694:281990..282009Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:281668..281740TCONS_00012650-exon-sc0000146-1575043694:281668..281740Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:280918..281021TCONS_00012650-exon-sc0000146-1575043694:280918..281021Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:280609..280688TCONS_00012650-exon-sc0000146-1575043694:280609..280688Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:280177..280283TCONS_00012650-exon-sc0000146-1575043694:280177..280283Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1575043694:278643..278786TCONS_00012650-exon-sc0000146-1575043694:278643..278786Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:283737..285899TCONS_00012650-exon-sc0000146-1510915933:283737..285899Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:282159..282219TCONS_00012650-exon-sc0000146-1510915933:282159..282219Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:281990..282009TCONS_00012650-exon-sc0000146-1510915933:281990..282009Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:281668..281740TCONS_00012650-exon-sc0000146-1510915933:281668..281740Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:280918..281021TCONS_00012650-exon-sc0000146-1510915933:280918..281021Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:280609..280688TCONS_00012650-exon-sc0000146-1510915933:280609..280688Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:280177..280283TCONS_00012650-exon-sc0000146-1510915933:280177..280283Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1510915933:278643..278786TCONS_00012650-exon-sc0000146-1510915933:278643..278786Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:283737..285899TCONS_00012650-exon-sc0000146-1491911889:283737..285899Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:282159..282219TCONS_00012650-exon-sc0000146-1491911889:282159..282219Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:281990..282009TCONS_00012650-exon-sc0000146-1491911889:281990..282009Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:281668..281740TCONS_00012650-exon-sc0000146-1491911889:281668..281740Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:280918..281021TCONS_00012650-exon-sc0000146-1491911889:280918..281021Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:280609..280688TCONS_00012650-exon-sc0000146-1491911889:280609..280688Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:280177..280283TCONS_00012650-exon-sc0000146-1491911889:280177..280283Clytia hemisphaericaexon
TCONS_00012650-exon-sc0000146-1491911889:278643..278786TCONS_00012650-exon-sc0000146-1491911889:278643..278786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:278643..285899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.0363	76.8824	50.0461	50.7607	50.5667	40.6999	26.8289	29.94	25.66	24.0362	24.2915	27.4648	29.6949	33.4298	25.5826	28.4643	24.7043	25.3499	11.9339	11.3722	32.5749	28.5446	76.9065	64.6967	31.5357	35.5422	15.1475	14.0697	45.019	52.6905
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00012650 vs. Swiss-Prot (Human)
Match: DDX56 (Probable ATP-dependent RNA helicase DDX56 OS=Homo sapiens GN=DDX56 PE=1 SV=1)

HSP 1 Score: 479.559 bits (1233), Expect = 3.056e-158
Identity = 251/508 (49.41%), Postives = 348/508 (68.50%), Query Frame = -1 
Query:  332 SFASFDLDDRLLKAISKLGWSKPTEVQRRTVPLALEGKDLIVRAKTGSGKTASYLIPILQNILKKSRVVDKTTPKKVAVVLVPSKELSKQAYRNALELTTSCSRTVKVLDVGNS--SVQNVGSIIPSADVLIGTPAKILAHINNKTFDMKSSMDYLVIDEADLMLSFGYENDLNTLVKNLPKIYQALLVSATIGSDVEHLKSQILRDPVVLKLQQSDVPEEGKLNQFIVKCEAD-DKFLLAYSLFKLNLIQGKNLIFVNSIDKCYRLKLFFEQFYIKSCVLNSELPQSSRIHIVDEFNKGVYDTVIATDESV----SIDXXXXXXXXXXXXXXKEYNVSRGIDFQDVDNVINLDFPTTADAYIHRVGRTARGDNTGTALSFVASPTDQTNLTKLEAKIK-DGSGADLKPYNFKINEIEGLRYRVNDAFNNVTKLKVKDARLKEIKGEIFNSSKLKTYFEDNPTDLKVLRHDKILAPTEQRPHMKNVPDYLVPDSLKQVMLKPKRKRKQ 1831
             F    LD RLL+A++ LGWS+PT +Q + +PLALEGKDL+ RA+TGSGKTA+Y IP+LQ +L +             +VLVP+KEL++QA     +L T C+R V+V +V  +  SV     ++   DV++GTP++IL+H+   +  ++ S++ LV+DEADL+ SFG+E +L +L+ +LP+IYQA L+SAT   DV+ LK  IL +PV LKLQ+S +P   +L QF V CE + DKFLL Y+L KL+LI+GK+L+FVN++++ YRL+LF EQF I +CVLN ELP  SR HI+ +FN+G YD VIATD  V         + +  K  K +D E  V+RGIDF  V  V+N D P T +AYIHR GRTAR +N G  L+FV  PT+Q +L K+E  +  +  G  L PY F++ EIEG RYR  DA  +VTK  +++ARLKEIK E+ +S KLKTYFEDNP DL++LRHD  L P   +PH+ +VPDYLVP +L+  +++P +KRK+
Sbjct:    8 GFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVL-PTEQFHLGKIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRG-LVRPHKKRKK 513
The following BLAST results are available for this feature:
BLAST of TCONS_00012650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX563.056e-15849.41Probable ATP-dependent RNA helicase DDX56 OS=Homo ... [more]
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