TCONS_00012651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012651
Unique NameTCONS_00012651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012651 ID=TCONS_00012651|Name=TCONS_00012651|organism=Clytia hemisphaerica|type=transcript|length=581bp
TTTTAGACTCCATGGCAAGGAGGTGTATACAAACTATGCATAACTTTCAC
TGAAGAATATCCATATCAACCACCGCTATGTGTTTTTGATCCACCAATCC
TTCATCCGAATATCTATCCCTCAGGAAAAGTATCATTATCCCTTTTGGAA
AAAGACTGGGTACCACAAATAACTATCAAacagATCTTATTGGGCATACA
AATTTTGCTTGACGATCCCAATTTTAACAATCCAGCTCAAGCAGAAGCTT
TCGTCATTCACAgCCAAGGGAAACATTTATACGATGAGAAAATCAAACAA
CAAGCAAAGGAAATGAGTCCATCTAGGTAGCAGTGCACTGTTTGGCCACC
AACAGCACAATACATTATAGGTAttacaactttttttcaattttgtatct
tttcattttcagttttattaattcttctttttgtaaataaataaagcCCA
CAAACCAAGCAACACCACAACGATTTATTTCACTAAACCATCCATCATCA
TTTGGCCGGAGAGAACTCCTTAGtatctcaaaaacaaaatttaaattcgG
ACAGAGAAGGACCtttacaaaaataattgaa
Run BLAST on NCBI

transcript from alignment at sc0000146:279966..281746-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012651 ID=TCONS_00012651|Name=TCONS_00012651|organism=Clytia hemisphaerica|type=transcript|length=1781bp|location=Sequence derived from alignment at sc0000146:279966..281746- (Clytia hemisphaerica)
TTTTAGACTCCATGGCAAGGAGGTGTATACAAACTATGCATAACTTTCAC
TGAAGAATATCCATATCAACCACCGCTATGTAATTAAGTTTATTGAATAG
TTTTTTAAGGCTAGGGGAGATCTGAAATTTTCATCTTGACCGACCCCTCT
AATTTAGATTGTCTCTTCAAAACAAGTTTGAGATTGCTCTTTCCTAACAA
ATATTATTATTGGTTGTTGGTTCTTGGTTGTGTTACATAATGTTACATAC
CGTTAAAAATTGAATAAAAATTTTTGGAAATGGATTCTCTTTGTTTAGTT
CATTTTTTTGGATGTGTTCCATCTACATTAGCTACTTTAAGGGAAGAAAT
TTTAGTGGAACAAATTTTTGCAGAATTTAATTTTGTAGTTTTTCGACAAA
TTCGCAAAATTAAATTCCGCGAAACACAAATATTCTCATGATTTAAAAAG
TCACCTATAAAATTGGCCTTTTAGGGCAAAATAGGCCATATTTCAAACAA
AAAATCCTTTCAATGGCGAAATTGAATTACGCAAAACTTCAGAATTTTGA
GCTGTGAACCACAAAATTAAATTCCGCAAAGATTTCTTCCCTTAATGTAG
ATTAGATTTTAAATCACTTTTGATAAACTTGCTAAAAACTTGCTAAAAAC
TTGCTGTCTCTTTTGACAGTGTTACCTATTCTTGTGATAATAACCGAAAT
CTTTGATTTAACTCGATCTCTACAGGTGTTTTTGATCCACCAATCCTTCA
TCCGAATATCTATCCCTCAGGAAAAGTATCATTATCCCTTTTGGAAAAAG
ACTGGGTACCACAAATAACTATCAAACAGGTTTGTTTTTGTTTATAATAA
TTTTGATTTGATATGATTGCAAGTCATTCATTAGGTTACGTCGTATCTTC
CTTCGTTCCCAGTGAAAATAACAGTGCCTATAGAGTTGTCTATCCTGAAG
ACGAGTCATTCAAAAAATTAGAGATTCAGCAAAGTTTGTTTGCTAGAGCA
TTGATTGATATTGAATTTCGTATAGAGAGAATTAATCATATTTACATTTC
ATCACTAGATCTTATTGGGCATACAAATTTTGCTTGACGATCCCAATTTT
AACAATCCAGCTCAAGCAGAAGCTTTCGTCATTCACAGGTAATATATATT
TTTATATACTGTAATATTCGATAGAAGACAGTGTAACTCATTTCCAAGTC
GACACCAACTTTAATGTCTAGGTTTAAAATAATTATGCCTTTTGTTATAA
GCTTTGGGTGAATACATTTTTCATTTTCAGCCAAATGATATGCGTATTGA
ATGATGCCAATGTAATTGAGTACATTGCACAAATTATGCTTCTTTGTTGT
ATGAGAAATGGAAAGAAAATTCTAAGAACTAAGCATGTAATACTCGAGTT
TTTCCTAGATTTGGGCCTCAATATATTTATAATAGTTCTAACTAACTTTT
CTTCGTTCCTTAGCCAAGGGAAACATTTATACGATGAGAAAATCAAACAA
CAAGCAAAGGAAATGAGTCCATCTAGGTAGCAGTGCACTGTTTGGCCACC
AACAGCACAATACATTATAGGTATTACAACTTTTTTTCAATTTTGTATCT
TTTCATTTTCAGTTTTATTAATTCTTCTTTTTGTAAATAAATAAAGCCCA
CAAACCAAGCAACACCACAACGATTTATTTCACTAAACCATCCATCATCA
TTTGGCCGGAGAGAACTCCTTAGTATCTCAAAAACAAAATTTAAATTCGG
ACAGAGAAGGACCTTTACAAAAATAATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007096XLOC_007096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012651-exon-sc0000146-1575043694:281668..281746TCONS_00012651-exon-sc0000146-1575043694:281668..281746Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1575043694:280918..281021TCONS_00012651-exon-sc0000146-1575043694:280918..281021Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1575043694:280609..280688TCONS_00012651-exon-sc0000146-1575043694:280609..280688Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1575043694:279966..280283TCONS_00012651-exon-sc0000146-1575043694:279966..280283Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1510915933:281668..281746TCONS_00012651-exon-sc0000146-1510915933:281668..281746Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1510915933:280918..281021TCONS_00012651-exon-sc0000146-1510915933:280918..281021Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1510915933:280609..280688TCONS_00012651-exon-sc0000146-1510915933:280609..280688Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1510915933:279966..280283TCONS_00012651-exon-sc0000146-1510915933:279966..280283Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1491911889:281668..281746TCONS_00012651-exon-sc0000146-1491911889:281668..281746Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1491911889:280918..281021TCONS_00012651-exon-sc0000146-1491911889:280918..281021Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1491911889:280609..280688TCONS_00012651-exon-sc0000146-1491911889:280609..280688Clytia hemisphaericaexon
TCONS_00012651-exon-sc0000146-1491911889:279966..280283TCONS_00012651-exon-sc0000146-1491911889:279966..280283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:279966..281746 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
76.9803	64.987	119.512	125.97	33.7306	30.7329	26.2662	23.416	17.0661	10.9906	6.60765	6.03775	4.92104	4.32478	10.5412	7.89343	22.5634	19.0407	7.83751	15.5101	8.394	10.2313	10.8444	10.5662	16.0386	14.4641	8.26104	4.44437	3.77649	5.73529
Blast
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BLAST of TCONS_00012651 vs. Swiss-Prot (Human)
Match: UBC9 (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.164e-28
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    7 TPWQGGVYKLCITFTEEYPYQPPLCVFDPPILHPNIYPSGKVSLSLLE--KDWVPXXXXXXXXXXXXXXXDDPNFNNPAQAEAFVIHSQGKHLYDEKIKQQAKEMSPS 324
            TPW+GG++KL + F ++YP  PP C F+PP+ HPN+YPSG V LS+LE  KDW P ITIKQILLGIQ LL++PN  +PAQAEA+ I+ Q +  Y+++++ QAK+ +PS
Sbjct:   51 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 158
The following BLAST results are available for this feature:
BLAST of TCONS_00012651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBC91.164e-2856.48SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
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