TCONS_00012653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012653
Unique NameTCONS_00012653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012653 ID=TCONS_00012653|Name=TCONS_00012653|organism=Clytia hemisphaerica|type=transcript|length=1411bp
acaacatttaaagcaaaaaaaggaAATCGTAGAGAGTGAAAAAAGCACAT
ACCATTTCATTCTTTGGAAAACTGGAGGAAAACGAAAGACTGGCAACGAC
AACAAAATACCAGGAAAAGCTTTGACCGTGATTTATAAATTTGACTTGAC
TACTAACCTTTTCTTCTAATTCTATTCATAATCTAATTTGAATTATCGAG
ATAATTTGTAAATTACAACCTTGGAGACGTTCTGGGCGCGTATGGCGGAT
CGGGCGCAAGAGGCGTATGGTGGTATGACGTCATTTCATTGAGAGGATTT
TCCTTTCTTGAAAATCCGATTCACTGATTGGAGAAAGGAAACAAAATGGC
GATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGATCATCACAGCAAAA
GTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAgggtttgaaaaactt
tttcacgaGCTTGACGTTAACAAAGATGGTAGGATTGGAGTTGATGAGTT
ATCAGACGGACTCAAAAGATTGGGAATACATCAAATACCAGGACAAGCTC
AGaaaatcaTTGACATTGGGGACATTGATGAAACTGAGGAACTGTCTTTT
GATGAATTTCTGAAATACTGTCACGATCATGAGCAAAAAGTATGGTTGAT
attcaaaaagtttgataccAATAATTCAGGTACCATCAATAAGAGTGAAC
TTGAATCTCAATTCAAGCACCTAGGAGTCAAAGTTTCTGAAAGTGAAATC
GATATGCTACTCAAAAAGATGGATAAGGATGGTTCATTACACATTGATTG
GGATGAATGGCGCAAATTTCATCTATTGAACCCCCATGCTCACAACATGG
CAAACATCATCAGGTTTTGGAGGCATTCTACGGTGAGTGATTGTCTCATT
TtattgtctaaatttttaaagttttttctagCCCCCACCTTTCCCCAGTA
TTGGTCAGACTCTTCTCCTATAACTTGGATCATGTGTTgaagaaagaata
tttcaactttgacTGGTAATCATAATATGTCGAGAAAACCAAAATATGTG
TAGTAAGTATGAGATTTTCAGGCAGAATTTACAACATAATAGAATAATTT
GTAATGAGAGAAGGAGCATCAAAACGACCTCTTTCGATCAAATTCTTTTA
ATAGTGGTGGTTTAAGTGCTTTTAGCATGACTACACAGTTTTCAAACGAC
TTGCTCACCTGCAGTGCACTCATCATAATGATTTGCATGCATAGATATCA
TTTTGTTACCATGGCAATACATTCCTTCCTCATAGGAAAATGTGCCTGAG
AAAGAATCGGCTTTATATAGTAAATTGATATTTAATAGAAATGTAATATT
TCCAATTACTGCGCTTATTTAATGTTCATTTCTATAATCCTTACCCTCGT
AGAAATGTCAT
Run BLAST on NCBI

transcript from alignment at sc0000146:460283..465390-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012653 ID=TCONS_00012653|Name=TCONS_00012653|organism=Clytia hemisphaerica|type=transcript|length=5108bp|location=Sequence derived from alignment at sc0000146:460283..465390- (Clytia hemisphaerica)
ACAACATTTAAAGCAAAAAAAGGAAATCGTAGAGAGTGAAAAAAGCACAT
ACCATTTCATTCTTTGGAAAACTGGAGGAAAACGAAAGACTGGCAACGAC
AACAAAATACCAGGAAAAGCTTTGACCGTGATTTATAAATTTGACTTGAC
TACTAACCTTTTCTTCTAATTCTATTCATAATCTAATTTGAATTATCGAG
ATAATTTGTAAATTACAACCTTGGAGACGTTCTGGGCGCGTATGGCGGAT
CGGGCGCAAGAGGCGTATGGTGGTATGACGTCATTTCATTGAGAGGATTT
TCCTTTCTTGAAAATCCGATTCACTGATTGGAGAAAGGAAACAAAATGGC
GATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGATCATCACAGCAAAA
GTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAGGGTTTGAAAAACTT
TTTCACGAGCTTGACGTTAACAAAGATGGTAGGATTGGAGTTGATGAGTT
ATCAGACGGACTCAAAAGATTGGGAATACATCAAATACCAGGACAAGCTC
AGGTAAAAAAATGAGTTTTATAATTCTTTATTTTTGAGGGTCCCTCTCTC
TAAAAAGGCACTTGTGGCTGCATAAAACTCTTTTACTTTCTCTTGAAAGT
TAAGTGTATTGAGTAGAAAATAGAAAAAATGGGACATGTAGCTAGTCTTG
CCAAAAGTTTAATTGGTGCGGTGAGATAAAAAAATTGGTTTTTGTACGTG
TAAAAAAGAAAGGTGCCATTGTTAACTTTTTTGCAACCTCTCTTTACTAA
AAAAAATTCTCAAACATCTGCTGAATTATTCTGACCTGACAGCTTGAGAT
ATTTGTCTTGCTTGAGATAAAAATTTTGAAGTAAAATCTGGCTGAAATCT
TTATACAGTCTGCGGGAAATCCTCTCAATTGCACGCTTATCAAAGCGCGC
CGTAAGCACGCAATTGCACGCTTATCAAAATGGCAGAATTTTTATAAACG
CTTATCGAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTACTCAAAATT
TATCGTAGAAGAAGATTCCGTAAAAATGGATCGCCCGTTAAACCATGCCT
TCGCCCGAATTAGAGAATTCTGAACCCCTTGAAGTCCCTAAGCAATTTCA
ACCAGGGCGGGAGCGGGCGTAAATTATAACCGTGCAATTGCGCGCTTACG
CCCTCGGAAGATAAGCGTGCAATTGAGAGGATTTCCCAGACTGTTATACC
CCGATCTTCCAAATTTTCTTCAAAAAATCACCGGGGTAATTTTTTCTCCA
AAAATCAGAAGGTAGGGGGAAATTTTCAGGAAAAACGAGAAATTCGTCGA
GAAAATTTTATCAATCAAATCTTCACCATCCCTATGTATGGATAATGGGT
CTTAGTTAGGACTTTATGATACTTAAAATATAGATAGATACCTTGAGGTG
GGTAACTTGCACCAGTGGAGGCTAACATGCATAGCCCTCAAATGAATGAC
CTGGCTGGTCATTAAAATAGACCTTTTTTCAAAGAGGACGTCCTGTTGAA
TAATTATGTAGTCCAGCCATAAAAACAATGATAGAGCTATGCATAATTAC
TGTATCATGCATATTGTAATAAATTATGCATGGTTTTAGTATTGTTTTTC
TGCTGGACTACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCT
ATACAACTACTTAGCTCCGCTCGCAGCTCTACTCTACCATTTTTGTTTTG
ATTTAACTTTGTATTTTAATGACCAGCCAGGTCTTTCATTTGAGGGCTAT
GCATGTTAGCATCCACTGATGCAAGTTACCCAATCTCACGGTAGATAGAT
AGACATAATCACAACCAAATGTGTATTTTTAAGTAAATAATTTGAAGAAG
AAGAAGTTAAGCTGCTCACATCTTGACGCCATTTTTTGTTTCAATTGTGT
TGGTTTTCTCTAGAGACTTTTTTCCAGCATGCGTGATTGAATGACACATC
AAAGTTACCCTTACCGAGTGTCAGTAACAGATCTCACAATTTTCCACAGC
GGAATGAAGAGCAGACTTTTTTACGTGTTTCTCGTTGCAAAGATTTTTTC
CTTTTTTTGTGGTGTGAAAGCCTGCCTGGGTGAGAGTAGTGTATTCACAA
TATTTGCTATCTATGATTTGCAGTTATGTTATAACTAGGCAAGGCCAATT
TAAAATTTGTTGTTTTACAGGCCAAGCTCAGTTCGGGAAATTGCATATAT
CTGCAACATTGCGAAATTTCGCATTTTTTGCATTGTCATATTCCGCAGCG
CTGTGAAATTTGGCAGCTTTATCGCATCTTACCACTGTTGGTAAGGGGAA
GGGCAGCCATTTGCTAATGAATTGGCTCGATACTGAGCAAAAACTCAACT
CTAGCCAAGGTTTTAAAGATAAAGCAGGTAAAGATTCAAAGGTTTAGGGT
CAGGCATGGGGCGGTCCACATAGTACGTACACACTAAAATATTGAAAATT
GAGTACCCCCTCCCCCCTGTACGCAAGTGATGAGGTTTGCCAGATGTTAT
CTTTTAATCCATTTTAGGAAAATAACTGAATATATTTCAATATTTGTTTT
GAAACCTTTAAAAACTATTTTAATTTTTTGACTGATGCTTGGCTTGTTTC
TAAGGAAGAAGAGCTAAGTTAGGAAAGAATTTTTTTTTTTCAAACAGCAC
TCTTCCTATGTTATTCTCTCCTATCTTAGTGGATGACAAAATAATGAACA
CAAACATGTTAGCCAGCATAATTCCCACAACAAAAATATTTGTTAATATT
TTTTTGCTAGGTACTGTAGTGCTAAGATTGACTAATATAACCTTTTGGAC
AGGACTTAAAATTATATTATTTGAAACCTTTCTTTCAACTACAAAGTGTT
TGAGCTTGTTCCTGAAAGCATTCTTCATGCCTTTTTAAGCTTCTGATGGT
TCATAGTTCGGAAGGGGGTCACTACCCCCCTACCCTAGAGCTACCCCCCT
ACCCTCCCTACCCTAGGTTCTTCCCCCTTTTAAAATCTGATGCTACCCCC
CTCAAAATTTGCGAAAAAAATAGAATCATTTTGAATCGAATGTTTCAAAC
ATACTAAACAATCAATAAAGAAGACGTTGCATTGTAAATTAAAAATAAAA
CTTCTAATTTGGGAAAACACAAAAAAAACATACCACTGACATCTTCCCCC
CCCTTTCTAGATGAACCCCCCCCTTTCTGAAAACTTCCCCCTTTCTAGAA
AAAATTCTCTTCCCCCCCCCCTTTCTGAGATTTTCTGAACATCGCTACCC
CCCCTTTATAAAGGGGGGGGGGTGCGAACTATGTTATTGAACCCTGAATA
TTCATAAAATTCCTTGAAATCGGAGCAAAAACAGTCTTTGTATTTGATTT
TATAAGAGTTTTAAATTTTATTTTTAATGGAAGTTTTGTTTGAGTGATTG
ATAATCATTTTAATGCTTCATTTTTTTGTTTTAGAAAATCATTGACATTG
GGGACATTGATGAAACTGAGGAACTGTCTTTTGATGAATTTCTGAAATAC
TGTCACGATCATGAGCAAAAAGTATGGTTGATATTCAAAAAGTTTGATAC
CAATAATTCAGGTAGGATTGAGAATTATATTAAAAATTTAAGGTGTTGGG
AAAATTTTTGAAAATAGCATAATGAAATCATATAATATGAAAAAATAAAT
TATTCATAAATATCCCGTAGAGTGATTCATCTAATTTATATATATATTAT
ATATAAATGTTGTTTTGACCTTTTTAAAAAAAACCCCATGCTCCTATTTT
CTGCACAATTTTATTTGATTGCAACAATGAATTTCCCTGTTCATTGATGA
CCCAGCTTTACCTTGCACCGTATGCACCTTTGATACAAATTTAGTTTAAA
TATTATATGCTTTGTCTTTAGGTACCATCAATAAGAGTGAACTTGAATCT
CAATTCAAGCACCTAGGAGTCAAAGTTTCTGAAAGTGAAATCGATATGCT
ACTCAAAAAGTATGATCACTTTTCTATCACTTTGCTTCAATTTTTAAACT
ACTTTTTAAACAGAGACCAATTTGTAATTTAACACAATAAGATATTTGCC
AACTTACCAGAATTGAGTATTGACTGACTTTGTCGGATTAATTTGAAGCA
CTGAAAGCTTCCTATATTTTTGTTTTTGACATTTATTAATAGTTTTTTCT
ATGCTATAATTTAGGATGGATAAGGATGGTTCATTACACATTGATTGGGA
TGAATGGCGCAAATTTCATCTATTGAACCCCCATGCTCACAACATGGCAA
ACATCATCAGGTTTTGGAGGCATTCTACGGTGAGTGATTGTCTCATTTTA
TTGTCTAAATTTTTAAAGTTTTTTCTAGCCCCCACCTTTCCCCAGTATTG
GTCAGACTCTTCTCCTATAACTTGGATCATGTGTTGAAGAAAGAATATTT
CAACTTTGACTGGTAATCATAATATGTCGAGAAAACCAAAATATGTGTAG
TAAGTATGAGATTTTCAGGCAGAATTTACAACATAATAGAATAATTTGTA
ATGAGAGAAGGAGCATCAAAACGACCTCTTTCGATCAAATTCTTTTAATA
GTGGTGGTTTAAGTGCTTTTAGCATGACTACACAGTTTTCAAACGACTTG
CTCACCTGCAGTGCACTCATCATAATGATTTGCATGCATAGATATCATTT
TGTTACCATGGCAATACATTCCTTCCTCATAGGAAAATGTGCCTGAGAAA
GAATCGGCTTTATATAGTAAATTGATATTTAATAGAAATGTAATATTTCC
AATTACTGCGCTTATTTAATGTTCATTTCTATAATCCTTACCCTCGTAGA
AATGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007098XLOC_007098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012653-exon-sc0000146-1575043694:464839..465390TCONS_00012653-exon-sc0000146-1575043694:464839..465390Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1575043694:461530..461656TCONS_00012653-exon-sc0000146-1575043694:461530..461656Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1575043694:461132..461219TCONS_00012653-exon-sc0000146-1575043694:461132..461219Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1575043694:460283..460926TCONS_00012653-exon-sc0000146-1575043694:460283..460926Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1510915933:464839..465390TCONS_00012653-exon-sc0000146-1510915933:464839..465390Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1510915933:461530..461656TCONS_00012653-exon-sc0000146-1510915933:461530..461656Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1510915933:461132..461219TCONS_00012653-exon-sc0000146-1510915933:461132..461219Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1510915933:460283..460926TCONS_00012653-exon-sc0000146-1510915933:460283..460926Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1491911889:464839..465390TCONS_00012653-exon-sc0000146-1491911889:464839..465390Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1491911889:461530..461656TCONS_00012653-exon-sc0000146-1491911889:461530..461656Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1491911889:461132..461219TCONS_00012653-exon-sc0000146-1491911889:461132..461219Clytia hemisphaericaexon
TCONS_00012653-exon-sc0000146-1491911889:460283..460926TCONS_00012653-exon-sc0000146-1491911889:460283..460926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:460283..465390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232072	0.217195	1.64428	0.499761	0	0.120347	0	0	0.08901	0	0	0	0.144553	0	0.116283	0.0594081	0	0.220648	0	0.113436	0	0	0	0	0	0	0.159083	0	0	0.243836
Blast
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BLAST of TCONS_00012653 vs. Swiss-Prot (Human)
Match: SCMC1 (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.322e-31
Identity = 64/152 (42.11%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  439 FEKLFHELDVNKDGRIGVDELSDGLKRLGIHQIPGQAQKXXXXXXXXXXXXLSFDEFLKYCHDHEQKVWLIFKKFDTNNSGTINKSELESQFKHLGVKVSESEIDMLLKKMDKDGSLHIDWDEWRKFHLLNPHAHNMANIIRFWRHSTVSDC 894
            +E LF  LD N DG + + EL +GL+ LGI       +KI   GD+++  +L F+EF+KY  DHE+K+ L FK  D NN G I  SE+    + LG+ +SE + +++L+ +D DG++ +DW+EWR + L NP   ++  IIRFW+HST  D 
Sbjct:   24 YETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHSTGIDI 174
The following BLAST results are available for this feature:
BLAST of TCONS_00012653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMC16.322e-3142.11Calcium-binding mitochondrial carrier protein SCaM... [more]
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