TCONS_00012657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012657
Unique NameTCONS_00012657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012657 ID=TCONS_00012657|Name=TCONS_00012657|organism=Clytia hemisphaerica|type=transcript|length=819bp
attattttctgcttttttttaaacaaaaaaaactttgtacACATAAATAT
GGAATAAAAACTTTAGCTTTATCAATTCTGGCTAAGCCAGCTAAAatgtc
aattaaaaaaaattaagaatactaTATGGCTGTGATTActaaaatttgga
ttttttcttctttcatttttcgtGCATTCTTACATGAACATTGAAGATTA
CACACAAAGTGAAAGTTATGGTGAAAGACAAAAGCCTTGTGCAATTTAAC
AATGCATCCCGAATATGTGCAAAAAATGTTAGAGATTTTTTTACCTATTT
ACCTTAAAGTGGAACAATTTTGGCCTTgatttaatttggtgaatgttcat
ttttgtaaaatttagcaggaatttaaattttcgaatAGGGAAGTTGGGAC
CAACTAAATATATGAAAATTACTCTGAAACATATTAAAAAGAGTGCTTTT
GTTTAATTTGGCGATGATTAGATTTGGGGAATGTTCAATCTTAGAAATTT
ATCTACTTTTGCCTAAACTAATCCACTTAAGATAGTTTTTTTACGAAATC
TCATGGTCTCGGGGCGCGTGGGCGGTTCTGTTATTACCCAAGATTCTGTT
AAAAACAAGTTTAATAATCTGAAAATTGcaaggaaaaaaattaaaaatgc
tacAATTCGTGATTTACAAAGATTTATAATGAGATAATACATAATAATTC
AAgtggaaaaaaaataatgaggaaTATTAAAGAATAATATATACCGTGAT
AAAATAACCATAGAATAACATATTGAAAaatagatttgaaaaaaatatga
ttcttccaCAAAATTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000146:38111..38929

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012657 ID=TCONS_00012657|Name=TCONS_00012657|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at sc0000146:38111..38929 (Clytia hemisphaerica)
AAAAAATTTTGtggaagaatcatatttttttcaaatctattTTTCAATAT
GTTATTCTATGGTTATTTTATCACGGTATATATTATTCTTTAATAttcct
cattattttttttccacTTGAATTATTATGTATTATCTCATTATAAATCT
TTGTAAATCACGAATTgtagcatttttaatttttttccttgCAATTTTCA
GATTATTAAACTTGTTTTTAACAGAATCTTGGGTAATAACAGAACCGCCC
ACGCGCCCCGAGACCATGAGATTTCGTAAAAAAACTATCTTAAGTGGATT
AGTTTAGGCAAAAGTAGATAAATTTCTAAGATTGAACATTCCCCAAATCT
AATCATCGCCAAATTAAACAAAAGCACTCTTTTTAATATGTTTCAGAGTA
ATTTTCATATATTTAGTTGGTCCCAACTTCCCTattcgaaaatttaaatt
cctgctaaattttacaaaaatgaacattcaccaaattaaatcAAGGCCAA
AATTGTTCCACTTTAAGGTAAATAGGTAAAAAAATCTCTAACATTTTTTG
CACATATTCGGGATGCATTGTTAAATTGCACAAGGCTTTTGTCTTTCACC
ATAACTTTCACTTTGTGTGTAATCTTCAATGTTCATGTAAGAATGCacga
aaaatgaaagaagaaaaaatccaaattttagTAATCACAGCCATAtagta
ttcttaattttttttaattgacatTTTAGCTGGCTTAGCCAGAATTGATA
AAGCTAAAGTTTTTATTCCATATTTATGTgtacaaagttttttttgttta
aaaaaaagcagaaaataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007101XLOC_007101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012657-exon-sc0000146-1491911889:38111..38929TCONS_00012657-exon-sc0000146-1491911889:38111..38929Clytia hemisphaericaexon
TCONS_00012657-exon-sc0000146-1510915933:38111..38929TCONS_00012657-exon-sc0000146-1510915933:38111..38929Clytia hemisphaericaexon
TCONS_00012657-exon-sc0000146-1575043694:38111..38929TCONS_00012657-exon-sc0000146-1575043694:38111..38929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:38111..38929 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0581602	0.170146	0.065852	0.128852	0.156865	0.309891	1.04684	1.96007	0.343074	0.303537	1.11956	0.503547	0.773611	0.843573	0.0660506	0.248088	3.31821	3.40106	2.59668	1.42331	5.90442	6.50051	1.80051	2.00068	1.62355	3.62244	2.39248	0.510663	0.129107	0.0657696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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