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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012666 ID=TCONS_00012666|Name=TCONS_00012666|organism=Clytia hemisphaerica|type=transcript|length=1518bp
TGTGGAGATTCTTGGAAAGCCGAGAGCTGAAAGTTGATTACTCACAGTAT
ACCACAGAGCTATgtaataaatgaataaaatacgaagtattagaaaatag
aaaagaatcATAAAATGTAGGTACAATTTGGTCGAATCCAACACTCGACC
AATACCTTCATACACTTCACTACATACGAGATTAGAACAAGCGAAAACGA
GTGAAAAATGTTAAGACTTTTCTTGAGTCTGATTATTATTTCACTTTTTA
TCAGCTACGGACAAGTTATATTAAAAGGAAAAGTGTCAGCGCATTCCATA
CAAAATGAACCAATCAAAAAAGACACCCAAGCAATCGTTCAAGGAGCCGA
AAAGACATCGAAAAGAATCGAAAATCCAAAACCGTTGGCAATGAACCAGG
ATCAAGATTCAGAAGAAAATGATAACCAAGATGCCGATGACGAGGAAATT
GCACCAAGAGCGAAGCGTTACGATTCTGATAGTGATGTTCGATACCGATA
CAACACCAATCGTGACAGCGATAACAACAACGATGGTGGTACATACATTT
ATGGATATGCAGGTGGTTCAGGCGTAGGAATAATTGTCTTTTTAGCCATA
CTTTATTGGTGTTGTTGCAGACCTAACTAAAACTAAATGACGGAACAGTA
GAACCTAAAGTAGAGTTATCTGGGTATAATTTATCATCTCTGCAAAgtta
aagaagaagaaagatcACGTGATCTGAGATTGGAACCCTCAGATTGGAAC
ATAACTACGTAAAGCTTATAACTAATATTTTGTATACCtgttaattttca
ataattttcgaattaaagaaaaactACAATCTGTGACataatacttggca
caaaagggaaattccccatgaaatttcaaaaccacaaacaatttttaagt
gctctaaagtaggttggaagggtagagttttaactctgagttttaacgct
agattGAAGACCTTAGGatatctgaggatccaaaagttcaaaaaaggtcc
gatagggcttgaaatatagcctggaaaccgataaatccctcccaaatcga
aatattcgatgacatgaagttgaaggcccgaaattgacattctcgctcgc
acttcaattttcaaaaaacggtaaaataaccaaaattgccaatatgttat
ggcactgattgtagtaaTTAGGAATTAACTACCTTGTAAATCCATAATGA
TAGATTAAAAGTCATAATTAAAGGCAAAAGCATTAGATTAAAGTGATATT
ATATATTAGGCTCTAAACTTATCAGGCCGGGCGGGTTTGACTTAAGCAGG
GTTAAGTTTTCATGTGTTAACtatacagtgccgtagcaactggggggggc
tatgcccccaatatttttttcaaaaatggttatttttcaaaatgctaagt
ttttctttttttttctcgaaagcaTTTTGGTTTGACTgcgttttcaagca
atctattgttattattattattatacagaaTACGGTTTCAGGCCCGTTCA
GGTCCTCTCTAAACCGAt Run BLAST on NCBI protein sequence of TCONS_00012666-protein >TCONS_00012666-protein ID=TCONS_00012666-protein|Name=TCONS_00012666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MLRLFLSLIIISLFISYGQVILKGKVSAHSIQNEPIKKDTQAIVQGAEKT
SKRIENPKPLAMNQDQDSEENDNQDADDEEIAPRAKRYDSDSDVRYRYNT
NRDSDNNNDGGTYIYGYAGGSGVGIIVFLAILYWCCCRPN Run BLAST on NCBI transcript from alignment at sc0000146:294761..296278 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012666 ID=TCONS_00012666|Name=TCONS_00012666|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000146:294761..296278 (Clytia hemisphaerica)
aTCGGTTTAGAGAGGACCTGAACGGGCCTGAAACCGTAttctgtataata
ataataataacaatagattgcttgaaaacgcAGTCAAACCAAAAtgcttt
cgagaaaaaaaaagaaaaacttagcattttgaaaaataaccatttttgaa
aaaaatattgggggcatagccccccccagttgctacggcactgtataGTT
AACACATGAAAACTTAACCCTGCTTAAGTCAAACCCGCCCGGCCTGATAA
GTTTAGAGCCTAATATATAATATCACTTTAATCTAATGCTTTTGCCTTTA
ATTATGACTTTTAATCTATCATTATGGATTTACAAGGTAGTTAATTCCTA
Attactacaatcagtgccataacatattggcaattttggttattttaccg
ttttttgaaaattgaagtgcgagcgagaatgtcaatttcgggccttcaac
ttcatgtcatcgaatatttcgatttgggagggatttatcggtttccaggc
tatatttcaagccctatcggaccttttttgaacttttggatcctcagata
tCCTAAGGTCTTCaatctagcgttaaaactcagagttaaaactctaccct
tccaacctactttagagcacttaaaaattgtttgtggttttgaaatttca
tggggaatttcccttttgtgccaagtattatGTCACAGATTGTagttttt
ctttaattcgaaaattattgaaaattaacaGGTATACAAAATATTAGTTA
TAAGCTTTACGTAGTTATGTTCCAATCTGAGGGTTCCAATCTCAGATCAC
GTgatctttcttcttctttaacTTTGCAGAGATGATAAATTATACCCAGA
TAACTCTACTTTAGGTTCTACTGTTCCGTCATTTAGTTTTAGTTAGGTCT
GCAACAACACCAATAAAGTATGGCTAAAAAGACAATTATTCCTACGCCTG
AACCACCTGCATATCCATAAATGTATGTACCACCATCGTTGTTGTTATCG
CTGTCACGATTGGTGTTGTATCGGTATCGAACATCACTATCAGAATCGTA
ACGCTTCGCTCTTGGTGCAATTTCCTCGTCATCGGCATCTTGGTTATCAT
TTTCTTCTGAATCTTGATCCTGGTTCATTGCCAACGGTTTTGGATTTTCG
ATTCTTTTCGATGTCTTTTCGGCTCCTTGAACGATTGCTTGGGTGTCTTT
TTTGATTGGTTCATTTTGTATGGAATGCGCTGACACTTTTCCTTTTAATA
TAACTTGTCCGTAGCTGATAAAAAGTGAAATAATAATCAGACTCAAGAAA
AGTCTTAACATTTTTCACTCGTTTTCGCTTGTTCTAATCTCGTATGTAGT
GAAGTGTATGAAGGTATTGGTCGAGTGTTGGATTCGACCAAATTGTACCT
ACATTTTATgattcttttctattttctaatacttcgtattttattcattt
attacATAGCTCTGTGGTATACTGTGAGTAATCAACTTTCAGCTCTCGGC
TTTCCAAGAATCTCCACA Coding sequence (CDS) from alignment at sc0000146:294761..296278 >TCONS_00012666 ID=TCONS_00012666|Name=TCONS_00012666|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000146:294761..296278 (Clytia hemisphaerica)
TTAGTTAGGTCTGCAACAACACCAATAAAGTATGGCTAAAAAGACAATTA
TTCCTACGCCTGAACCACCTGCATATCCATAAATGTATGTACCACCATCG
TTGTTGTTATCGCTGTCACGATTGGTGTTGTATCGGTATCGAACATCACT
ATCAGAATCGTAACGCTTCGCTCTTGGTGCAATTTCCTCGTCATCGGCAT
CTTGGTTATCATTTTCTTCTGAATCTTGATCCTGGTTCATTGCCAACGGT
TTTGGATTTTCGATTCTTTTCGATGTCTTTTCGGCTCCTTGAACGATTGC
TTGGGTGTCTTTTTTGATTGGTTCATTTTGTATGGAATGCGCTGACACTT
TTCCTTTTAATATAACTTGTCCGTAGCTGATAAAAAGTGAAATAATAATC
AGACTCAAGAAAAGTCTTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012666-exon-sc0000146-1491911889:294761..296278 | TCONS_00012666-exon-sc0000146-1491911889:294761..296278 | Clytia hemisphaerica | exon |
| TCONS_00012666-exon-sc0000146-1510915933:294761..296278 | TCONS_00012666-exon-sc0000146-1510915933:294761..296278 | Clytia hemisphaerica | exon |
| TCONS_00012666-exon-sc0000146-1575043694:294761..296278 | TCONS_00012666-exon-sc0000146-1575043694:294761..296278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:294761..296278 . |
Blast
The following BLAST results are available for this feature:
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