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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012685 ID=TCONS_00012685|Name=TCONS_00012685|organism=Clytia hemisphaerica|type=transcript|length=332bp
CCagattctaaaaataaaaataaaaactgacaaaactaaaaaatatatGA
ATAAACTTTTCCCAGTTATTAGAAGAACTTTACATACTCGATCATTTTCA
TCCACCACTACAAGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGA
GAAAACTATCGATTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTG
CAGaGCAAAAGCAGAAGATAGCAGAAAAGGAGGAGATTCAAAAGCTTCGC
AAAGAAAATGAGCAAGCAGAAAAACAAGTCCAGaaattgaaatatgattt
aCGCTTTTATGAATCACAAAATGGAGGTAAAG Run BLAST on NCBI transcript from alignment at sc0000147:302322..305219+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012685 ID=TCONS_00012685|Name=TCONS_00012685|organism=Clytia hemisphaerica|type=transcript|length=2898bp|location=Sequence derived from alignment at sc0000147:302322..305219+ (Clytia hemisphaerica)
CCagattctaaaaataaaaataaaaactgacaaaactaaaaaatatatGA
ATAAACTTTTCCCAGTTATTAGAAGAACTTTACATACTCGATCATTTTCA
TCCACCACTACAAGAATGAATGCCTTTGTAGAACGCCAACAACAAGCTGA
GAAAACTATCGATTTGTTAAAACAACAGATTGCTGTTTTGGTTTCAATTG
CAGGTTTGTAAATTATTTATTACCAGATTAGAACATGTTGCATGTAAAAA
AAACACTGctggaaaatttcaaagcaGAAACAAGATGTTTTTCGAGGTAA
AAAAGTGCAATTGTCATCTGACTGGAAAAAAGTGGGATGTTGGTTAACAA
TTGGGTTGGTTGATGCTTTTTTTTGAATAGTGGGTTTATAGATCATTGTT
TAATTCCTTACTTGAAAATTGATTCATTTTCTGCAGAACAAGCGAATTCA
GCCAATAAGCTATGCTAtctaattttactttcaataacaatttaaaataa
tgttCTCATAGAGTTATTTATTGATATATTCCTTCAAatacttgatttct
ttttttacagaGCAAAAGCAGAAGATAGCAGAAAAGGTATACCTATCATA
AATCTACAAGCATGATTTACTCAGACTCTGTTATATGGCACTTTTACATG
ATTGTTGGTCtaattttgcatcattgttGCTATACATTGGTGATAGCTAA
TATTCAgatgattttcaaatgatacACTAATAAAGTAAAGTGATTTACAT
TTAAATGTCCTAATTtacataattttcttttttgcgcAACCAGGATTGGA
CTTAGGCTTGAAGACAACAGATCTATTGttgtcaaaaaatgaaaaatggc
tgTCTATACTTTAAAGTACGGTTTGATTATAATGAAGAATACCTTTTCAA
AAGCATTTACACTTACAGATTAGCTTTGGTTTTTGTTTTAACTTCTTTTC
TTTGCTTTTCAACCTTACCAGGAGGAGATTCAAAAGCTTCGCAAAGAAAA
TAAGCAAGCAGAAAAACAAGTCCAGaaattgaaatatgatttaCGCTTTT
ATGAATCACAAAATGGAGGTAAATTCTAAAAGCtatctactttttaaaat
aCTATCAAAAGTTGTTTCTATCCGCTGttatttttatcattaaaatgatt
ttaaaaatcaaaactttcatATAATGAGAAGAAATTTAGTTTGTTGTCCA
GTTATCTTCTATTAGGTGAcccatagtttctagaggggtcaagacccccc
ttaggaaattcatttaaaatttcacaccccccttagaaaatcagtataaa
tgaaacgATTGTACAAAAGTCTTAATTTCgcataattcaaggaagatccc
cccttatctaagaagaacccccttaactggcaaccccccttaggaaagtc
atacttttaacaccccccttaagtttggttcatcaaaacctaagaccccc
ctaaatgtagggggTTTTGATAAGTTGTACAGTTTTCCTATGGAACGAGA
TATCCTTATGTAACTTGAAATAATTGTTTCCAAGAtcaattccatgttta
aaactACATTAAATTTAACCGCCTTTTCTTTACCTTACATTTTTACGAGG
AACGTAATCACATAAACAAAAATTATGGTACGAAAATTGAATCTCAAACT
TTGATCATACGATATTATGTTAAACTTTCATTTTGTAGTCAAACAAATAG
CTGTTCCTGAGAAATCCACCCCAGTTGCATCAACCCCAACAACGGTGGAA
GAGACACCAAAACCTTCGCAACCAGCACCTTCTTCAGGTGACAAGAAGAA
TGAGAAAGCAAAAGCTTCCAACGAGAACAAGAAAGACAAGAAGAAAGcca
acaaagaaaataaagcaCCAAAAGCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGCTGGAAcatggacctttaaaaaccttaaaaatggtc
aaaatagactaaatttaggctttttagagtaaactAACTAGAGAGTAGAT
TAACAAGCGGGGCCGCccatttatttggcacctaagagtatagATCATTG
TTTAATTCCTTACTTAATTGATTAATTTTCTGCGGAACAAGCGAATTCGG
CCAATATGCTATTCTAtctaattttactttcaataacaatttaaaataat
gttCTCATAGAGGTGTTATTTATTGATATATtgacttgatttcttttttt
acagaGCAAAAGCAGAAGATAGCAGAAAAGGTATACCTATCATAAATCTA
CAAGCATGATTTACTCAGACTCTGTTATATGGCACTTTTTACATGGTTGT
TGGTCAAATTTTGCACCATTGTTGCTATACGTTGATAGCTAATATTCAga
tgattttcaaatgatacACTAATAAAGTAATGTGATTTAGATTTAAAAAT
GTCCTAATTtacataattttctttttcgcgCAACCAGGATTGGACTTAGG
CTTGAAGACAACATAATTattgtcaaaaaatgaaaaatttctgtCTATAT
TTTAAAAGAAGAATACATTTTCAAAAGCGTCTACACTTACAGAttggttt
tggtttttgttttaacctcttttctttgctttttaaCCTTACCAGGAGGA
GATTCAAAAGCTTCGCAAAGAAAATGAGCAAGCAGAAAAACAAGTCCAGa
aattgaaatatgatttaCGCTTTTATGAATCACAAAATGGAGGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012685-exon-sc0000147-1491911889:302322..302524 | TCONS_00012685-exon-sc0000147-1491911889:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1510915933:302322..302524 | TCONS_00012685-exon-sc0000147-1510915933:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1575043694:302322..302524 | TCONS_00012685-exon-sc0000147-1575043694:302322..302524 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1491911889:302882..302907 | TCONS_00012685-exon-sc0000147-1491911889:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1510915933:302882..302907 | TCONS_00012685-exon-sc0000147-1510915933:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1575043694:302882..302907 | TCONS_00012685-exon-sc0000147-1575043694:302882..302907 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1491911889:305117..305219 | TCONS_00012685-exon-sc0000147-1491911889:305117..305219 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1510915933:305117..305219 | TCONS_00012685-exon-sc0000147-1510915933:305117..305219 | Clytia hemisphaerica | exon |
| TCONS_00012685-exon-sc0000147-1575043694:305117..305219 | TCONS_00012685-exon-sc0000147-1575043694:305117..305219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:302322..305219 + |
Blast
The following BLAST results are available for this feature:
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