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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012693 ID=TCONS_00012693|Name=TCONS_00012693|organism=Clytia hemisphaerica|type=transcript|length=2940bpRun BLAST on NCBI protein sequence of TCONS_00012693-protein >TCONS_00012693-protein ID=TCONS_00012693-protein|Name=TCONS_00012693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=865bp MKTVLMVAEKPSLAQSIAKILSNGSSSQRKGVSPSCAIHEFQGSFKGENVRun BLAST on NCBI transcript from alignment at sc0000147:327334..349172+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012693 ID=TCONS_00012693|Name=TCONS_00012693|organism=Clytia hemisphaerica|type=transcript|length=21839bp|location=Sequence derived from alignment at sc0000147:327334..349172+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000147:327334..349172+ >TCONS_00012693 ID=TCONS_00012693|Name=TCONS_00012693|organism=Clytia hemisphaerica|type=CDS|length=41568bp|location=Sequence derived from alignment at sc0000147:327334..349172+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012693 vs. Swiss-Prot (Human)
Match: TOP3B (DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1) HSP 1 Score: 961.444 bits (2484), Expect = 0.000e+0 Identity = 466/818 (56.97%), Postives = 593/818 (72.49%), Query Frame = 2
Query: 68 TVLMVAEKPSLAQSIAKILSNGSSSQRKGVSPSCAIHEFQGSFKGENVFFKMTSVCGHVMALNFSGAFNNWDTCDPIELF-QAKTIKKESMPNLNICRHLQKEGKAIDYLVLWLDCDKEGENICFEVIDIVKPIMKNS----QNIFRAKFSAITDKDIKQALNTVGKPNKDESMSVDARQELDLRVGCAFTRFQTRYFQGKYGNLDSSLISYGPCQTPTLGFCVERHDQIQTFKPEIYWRILIKTKS----GMQLDWQRGRIFDKDVALAFHDRMKNEKPQXXXXXXXXXXXXAKQRPQALNTVELLRVASARLGIGPQQTMQIAERLYIQGYISYPRTETNQYHDNYNLKEQVVKQKASGVWGGYINKLLNEKGGIQKPRKGQDCGDHPPITPMRVASEGDLGGDTWRIYSYIVRHFIATVSGDCKYLLCSVLFQLGTESFSCEGRTIIDPGFTEILDTNQTEDLNERIPKVEKNXXXXXXXXXXXXRHTTAPEYLSEAELILLMEKHGIGTDASIPTHINNICQRNYVTVTNGRRLVPNPLGIVLVHGYQKIDEQLVFPTIRSSVEKQLNLIAQGRACFEDVLSFYVDIFEDKFEFFSKNIQNMDDLFECSFTKLSETGKPFSKCGKCRRYMKLVEAKPARLHCSTCNETYSVPQNGMIKLYQELKCPLDDFEILLWSRHGASKTYSFCPNCYTNPTLEKMEKNLGCNQCLHPTCKHSALQLGVGPCTACEDGRLILEPFNAPKWILSCNSPKCSDRYSLCKGAQSVKVKDEVCK-CGRKILDVSYK--------DKAALSGCMACDTAMANLVNF 2467
TVLMVAEKPSLAQSIAKILS GS S KG++ +C++HE+ G+F G+ V FKMTSVCGHVM L+F G +N WD DP ELF QA T KKE+ P LN+ + LQ EG+ DY+VLWLDCDKEGENICFEV+D V P+M + + +FRA+FS+ITD DI A+ +G+P+ +E++SVDARQELDLR+GCAFTRFQT+YFQGKYG+LDSSLIS+GPCQTPTLGFCVERHD+IQ+FKPE YW + K + + LDW R R+FD+++A F + K EK +VE+ KEKAKQRP ALNTVE+LRVAS+ LG+GPQ MQ AERLY QGYISYPRTET Y +N++LK + +Q W + +LL E GI +PRKG D GDHPPITPM+ A+E +LGGD WR+Y YI RHFIATVS DCKYL ++ F++G E F+C G+T++ PGFTE++ Q+ L E +P ++ + ++ + E+ T P+YL+EAELI LMEKHGIGTDASIP HINNICQRNYVTV +GRRL P LGIVLVHGY KID +LV PTIRS+VEKQLNLIAQG+A + VL +D+F+ KF +F +I MD+L E SF+ L+ TGKP S+CGKC R+MK ++AKP+RLHCS C+ETY++PQNG IKLY+EL+CPLDDFE++LWS K+Y CP CY +P M+K +GCN+C HP+C+HS LG+G C CE G L+L+P + PKW ++CN KC+ + A V+V + C C +LDV + D+ GC+ CD LV
Sbjct: 3 TVLMVAEKPSLAQSIAKILSRGSLSSHKGLNGACSVHEYTGTFAGQPVRFKMTSVCGHVMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYIVLWLDCDKEGENICFEVLDAVLPVMNKAHGGEKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVRVFDREIAQMFLNMTKLEK--EAQVEATSRKEKAKQRPLALNTVEMLRVASSSLGMGPQHAMQTAERLYTQGYISYPRTETTHYPENFDLKGSLRQQANHPYWADTVKRLLAE--GINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYLQSTISFRIGPELFTCSGKTVLSPGFTEVMPW-QSVPLEESLPTCQRGDAFPVGEVKMLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVDSIAGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWKVACN--KCNVVAHCFENAHRVRVSADTCSVCEAALLDVDFNKAKSPLPGDETQHMGCVFCDPVFQELVEL 813 The following BLAST results are available for this feature:
BLAST of TCONS_00012693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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