TCONS_00012756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012756
Unique NameTCONS_00012756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012756 ID=TCONS_00012756|Name=TCONS_00012756|organism=Clytia hemisphaerica|type=transcript|length=1706bp
tattcccaaagcaaccaaacagctgtttgcttccgatgataaatcagaat
aaaacaaaaggcattgactatccatctatctttattaccttcatggtaaA
ACACAAGATTGTTTTGTTGATCACCATACAGGTAACGAcgtatcttttta
tttttaagtgaAGTTTGATGGTAATCTATTTGGTATGATATGATTTGAAA
GGAGGGATGGTGAAAATGGCATTAAAAAGAAACTGAAAGTACCTCTTAGA
AAAGtggatgattttttttgaagctatCTGAAAATCTACACTCGAAGAAA
AATGCGGCGTCTTAAAAAGTTTCCCCtgcttgtttttgtttgttggaTTA
CGATGACAATTCTTTATACTTGTTTTGTACCAATGAAGCTGAGACAAGAA
CTTAAAGACCTTAAGACAAAACTGAATGAACAACATGCTAATTACACTAA
CAAGCTGAAACTTGCCTTAAAAACTGTTGAAAAGCTGAAAGACCATGTAA
AATGGAACATATATGGAATGAATCTCAAAACACCTAATATAGAACTTGTC
AACTCGAGAGATATTGAAGCAAGAGACACGCAGATTATTATTTTAGTGAC
GTCACATATCGCAAATAAAAATCGAAGGGACTCTATAAGAGTGAACTGGG
GAGATCCAAGTAAATTTACTAAACATACGAGGCTTTACAACGGCGAAGCT
ACATATAAAGTATATTTCATGACCGGCTATTTACAAAACCACATCGGTAA
TGCTAGCTTGGAGTCTACTATTCACAAAGACATGCTTATAATGAATAGAA
CAGAAAATTATTGGGATTTGTCAAGGAAATTTATGTTAGGTTTCTTATGG
TCTCTTGAAAATTGCCAATTTGATTATCTTTTGAAAACTGACGATGATGT
TTTTGTCAACATACCAACTTTATTTAAATTGATTCACAAAGACCCGTTTG
TTTTGAAACATAAAGACAGACTTTATGCAGGACACATGTATGAAGGTCTC
GGCCCACATCGTAACAACTTCTCTAAATGGTATGTGTCAAAAGAGGAGTG
GGCACCAAAGAATTATCCACCCTTCGCCCCTGGTATGGCAGTTATCTTAT
CAAGATTTGTTATCAAAAAAATGGTCCCTTATTTCGATTGGGTGAAACCT
TTTAAATTGGAAGATGTTTATATAGGGATGTTGGTGAATTATGCAAATGT
GTCAGGAGTGGGAATTCGAAAGCCAGTTGGTGTTGAATTTTATGATAATC
TTCAGGATAGAAGAAATTGTGGGTATTCATCGAGGGTGATCGCTTTCCAT
AAAATTCTAGACAATTACTGTATGACATTCTTAACAAATAACAGTATGAA
ATGAAtataaacattttaaatttAGAGAAATTTCTCTATCTTGTTGGAAA
AATAATCTTTGTGGATTAATTCAAGCTTTggaaagtaataaaaaaatcgA
GAATACAGAtgaaacacaaaacaaaatgaaaaagataatcggtttagatt
taaaatttttttattaatctaTGTTGTGtctattgatttaaaaaatgtgt
attaatTTTGTCTCCCGAATAGACGGGGGAAGGTCCGAATAAGCAGGGGG
TAGGAAAATTTTCTATATTATTATAAGTGGGGGGATGGAATAAGAGGGGG
GAGGTAATTTGAAGACATAATATTTTTTGTTACTTTCTTTAATAACTAAA
AACGCA
Run BLAST on NCBI

protein sequence of TCONS_00012756-protein

>TCONS_00012756-protein ID=TCONS_00012756-protein|Name=TCONS_00012756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MRRLKKFPLLVFVCWITMTILYTCFVPMKLRQELKDLKTKLNEQHANYTN
KLKLALKTVEKLKDHVKWNIYGMNLKTPNIELVNSRDIEARDTQIIILVT
SHIANKNRRDSIRVNWGDPSKFTKHTRLYNGEATYKVYFMTGYLQNHIGN
ASLESTIHKDMLIMNRTENYWDLSRKFMLGFLWSLENCQFDYLLKTDDDV
FVNIPTLFKLIHKDPFVLKHKDRLYAGHMYEGLGPHRNNFSKWYVSKEEW
APKNYPPFAPGMAVILSRFVIKKMVPYFDWVKPFKLEDVYIGMLVNYANV
SGVGIRKPVGVEFYDNLQDRRNCGYSSRVIAFHKILDNYCMTFLTNNSMK
Run BLAST on NCBI

transcript from alignment at sc0000147:125474..127179

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012756 ID=TCONS_00012756|Name=TCONS_00012756|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at sc0000147:125474..127179 (Clytia hemisphaerica)
TGCGTTTTTAGTTATTAAAGAAAGTAACAAAAAATATTATGTCTTCAAAT
TACCTCCCCCCTCTTATTCCATCCCCCCACTTATAATAATATAGAAAATT
TTCCTACCCCCTGCTTATTCGGACCTTCCCCCGTCTATTCGGGAGACAAA
attaatacacattttttaaatcaatagaCACAACAtagattaataaaaaa
attttaaatctaaaccgattatctttttcattttgttttgtgtttcaTCT
GTATTCTcgatttttttattactttccAAAGCTTGAATTAATCCACAAAG
ATTATTTTTCCAACAAGATAGAGAAATTTCTCTaaatttaaaatgtttat
aTTCATTTCATACTGTTATTTGTTAAGAATGTCATACAGTAATTGTCTAG
AATTTTATGGAAAGCGATCACCCTCGATGAATACCCACAATTTCTTCTAT
CCTGAAGATTATCATAAAATTCAACACCAACTGGCTTTCGAATTCCCACT
CCTGACACATTTGCATAATTCACCAACATCCCTATATAAACATCTTCCAA
TTTAAAAGGTTTCACCCAATCGAAATAAGGGACCATTTTTTTGATAACAA
ATCTTGATAAGATAACTGCCATACCAGGGGCGAAGGGTGGATAATTCTTT
GGTGCCCACTCCTCTTTTGACACATACCATTTAGAGAAGTTGTTACGATG
TGGGCCGAGACCTTCATACATGTGTCCTGCATAAAGTCTGTCTTTATGTT
TCAAAACAAACGGGTCTTTGTGAATCAATTTAAATAAAGTTGGTATGTTG
ACAAAAACATCATCGTCAGTTTTCAAAAGATAATCAAATTGGCAATTTTC
AAGAGACCATAAGAAACCTAACATAAATTTCCTTGACAAATCCCAATAAT
TTTCTGTTCTATTCATTATAAGCATGTCTTTGTGAATAGTAGACTCCAAG
CTAGCATTACCGATGTGGTTTTGTAAATAGCCGGTCATGAAATATACTTT
ATATGTAGCTTCGCCGTTGTAAAGCCTCGTATGTTTAGTAAATTTACTTG
GATCTCCCCAGTTCACTCTTATAGAGTCCCTTCGATTTTTATTTGCGATA
TGTGACGTCACTAAAATAATAATCTGCGTGTCTCTTGCTTCAATATCTCT
CGAGTTGACAAGTTCTATATTAGGTGTTTTGAGATTCATTCCATATATGT
TCCATTTTACATGGTCTTTCAGCTTTTCAACAGTTTTTAAGGCAAGTTTC
AGCTTGTTAGTGTAATTAGCATGTTGTTCATTCAGTTTTGTCTTAAGGTC
TTTAAGTTCTTGTCTCAGCTTCATTGGTACAAAACAAGTATAAAGAATTG
TCATCGTAAtccaacaaacaaaaacaagcaGGGGAAACTTTTTAAGACGC
CGCATTTTTCTTCGAGTGTAGATTTTCAGatagcttcaaaaaaaatcatc
caCTTTTCTAAGAGGTACTTTCAGTTTCTTTTTAATGCCATTTTCACCAT
CCCTCCTTTCAAATCATATCATACCAAATAGATTACCATCAAACTtcact
taaaaataaaaagatacgTCGTTACCTGTATGGTGATCAACAAAACAATC
TTGTGTTttaccatgaaggtaataaagatagatggatagtcaatgccttt
tgttttattctgatttatcatcggaagcaaacagctgtttggttgctttg
ggaata

Coding sequence (CDS) from alignment at sc0000147:125474..127179

>TCONS_00012756 ID=TCONS_00012756|Name=TCONS_00012756|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000147:125474..127179 (Clytia hemisphaerica)
TCATTTCATACTGTTATTTGTTAAGAATGTCATACAGTAATTGTCTAGAA
TTTTATGGAAAGCGATCACCCTCGATGAATACCCACAATTTCTTCTATCC
TGAAGATTATCATAAAATTCAACACCAACTGGCTTTCGAATTCCCACTCC
TGACACATTTGCATAATTCACCAACATCCCTATATAAACATCTTCCAATT
TAAAAGGTTTCACCCAATCGAAATAAGGGACCATTTTTTTGATAACAAAT
CTTGATAAGATAACTGCCATACCAGGGGCGAAGGGTGGATAATTCTTTGG
TGCCCACTCCTCTTTTGACACATACCATTTAGAGAAGTTGTTACGATGTG
GGCCGAGACCTTCATACATGTGTCCTGCATAAAGTCTGTCTTTATGTTTC
AAAACAAACGGGTCTTTGTGAATCAATTTAAATAAAGTTGGTATGTTGAC
AAAAACATCATCGTCAGTTTTCAAAAGATAATCAAATTGGCAATTTTCAA
GAGACCATAAGAAACCTAACATAAATTTCCTTGACAAATCCCAATAATTT
TCTGTTCTATTCATTATAAGCATGTCTTTGTGAATAGTAGACTCCAAGCT
AGCATTACCGATGTGGTTTTGTAAATAGCCGGTCATGAAATATACTTTAT
ATGTAGCTTCGCCGTTGTAAAGCCTCGTATGTTTAGTAAATTTACTTGGA
TCTCCCCAGTTCACTCTTATAGAGTCCCTTCGATTTTTATTTGCGATATG
TGACGTCACTAAAATAATAATCTGCGTGTCTCTTGCTTCAATATCTCTCG
AGTTGACAAGTTCTATATTAGGTGTTTTGAGATTCATTCCATATATGTTC
CATTTTACATGGTCTTTCAGCTTTTCAACAGTTTTTAAGGCAAGTTTCAG
CTTGTTAGTGTAATTAGCATGTTGTTCATTCAGTTTTGTCTTAAGGTCTT
TAAGTTCTTGTCTCAGCTTCATTGGTACAAAACAAGTATAAAGAATTGTC
ATCGTAAtccaacaaacaaaaacaagcaGGGGAAACTTTTTAAGACGCCG
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007153XLOC_007153Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012756-proteinTCONS_00012756-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012756-exon-sc0000147-1491911889:125474..127179TCONS_00012756-exon-sc0000147-1491911889:125474..127179Clytia hemisphaericaexon
TCONS_00012756-exon-sc0000147-1510915933:125474..127179TCONS_00012756-exon-sc0000147-1510915933:125474..127179Clytia hemisphaericaexon
TCONS_00012756-exon-sc0000147-1575043694:125474..127179TCONS_00012756-exon-sc0000147-1575043694:125474..127179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:125474..127179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7439	23.3455	6.61582	3.57235	0.768389	0.556536	1.61958	1.57062	0.699835	1.33617	0.240105	0.28512	0.0952887	0.0822664	0.0942301	0.260672	0.871977	0.984696	0.0505395	0.105704	4.92473	4.43513	25.2988	24.2203	2.50887	2.63424	1.36614	2.049	12.1039	15.428
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
[Close]
BLAST of TCONS_00012756 vs. Swiss-Prot (Human)
Match: B3GL1 (UDP-GalNAc:::beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B3GALNT1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.503e-21
Identity = 69/252 (27.38%), Postives = 122/252 (48.41%), Query Frame = 2 
Query:  584 IIILVTSHIANKNRRDSIRVNWGDPSKFTKHTRLYNGEATYKVYFMTGYLQNHIGNASLEST--IHKDMLIMNRTENYWDLSRKFMLGFLWSLENC-QFDYLLKTDDDVFVNIPTLFKLIHKDPFVLKHKDRLYAGHMYEGLGPHRNNFSKWYVSKEEWAPKNYPPFAPGMAVILSRFVIKKMVPYFDWVKPFKLEDVYIGMLVNYANVSGVGIRKPVGVEFYDNLQDRRNCGYSSRVIAFHKILDNYCMTF 1330
            ++ILVTSH ++   R +IRV WG+   +  +  L     T+ +       ++ +   SLE    ++ D++  +  + Y +L+ K ++ F W  E C    Y++KTD DVF+N   L K +      L H ++ + G+       +R  + K ++S +E+  K +PP+  G+  I+SR ++ ++      VKP K EDVY+G+ +   N+  V I  P     +   +   +     RVIA H       +TF
Sbjct:   80 LVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVL-----TFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLN----LNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMGHVKPIKFEDVYVGICL---NLLKVNIHIPEDTNLFFLYRIHLDVCQLRRVIAAHGFSSKEIITF 319
The following BLAST results are available for this feature:
BLAST of TCONS_00012756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GL14.503e-2127.38UDP-GalNAc:::beta-1,3-N-acetylgalactosaminyltransf... [more]
back to top