TCONS_00012760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012760
Unique NameTCONS_00012760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012760 ID=TCONS_00012760|Name=TCONS_00012760|organism=Clytia hemisphaerica|type=transcript|length=667bp
TTAGGAAGCTTGGAAAAACTACCCTTAAGGGTAATTtttacacatatggt
agatcgtttaccttgagtacccccccccccagaattATGGGCTATTGTTA
AGAATCTTTTTTACTTCTTGAGCTATTTTACTTCTCGATTATTTATGCAC
AAGGATTCAAGGATAATCAATTCTTAGAAACCGACGTATTCGACAATCGC
CGAAAACCGCTCACTTTTTGATTCTATCACCCACAAAAACAGCCCAATCA
CCGACCAACACCATAATCTTTTCCCTTCACTGATACCCGCACAGATTTCG
TGCTCTTCACCAATAAACCGACAAAAAAAGGCCCGAAACCGACAAACCGc
tttttttgatgatgatattttaaacataattatgcatgacatcACTTTTA
TGATCAGTAGATATGAATCGTAAATTAAATCGTAAAAATCAGGTTTGTTT
GGATTTAACTATTTTATTGGCCAggcaggtcattcatttgagtgctatct
atgcatgttagcctctacTGACTACCAAATCTCACGTTATAAAagttgga
atcactgattgaaaaaggatttttcCTTCTCTGACAACTAATccaagaaa
aatagttttgacctttctattattttaagctctaaaaaagggtgtcagaa
ttagattAGGGATGTTA
Run BLAST on NCBI

transcript from alignment at sc0000147:226767..227433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012760 ID=TCONS_00012760|Name=TCONS_00012760|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0000147:226767..227433 (Clytia hemisphaerica)
TAACATCCCTaatctaattctgacacccttttttagagcttaaaataata
gaaaggtcaaaactatttttcttggATTAGTTGTCAGAGAAGgaaaaatc
ctttttcaatcagtgattccaactTTTATAACGTGAGATTTGGTAGTCAg
tagaggctaacatgcatagatagcactcaaatgaatgacctgccTGGCCA
ATAAAATAGTTAAATCCAAACAAACCTGATTTTTACGATTTAATTTACGA
TTCATATCTACTGATCATAAAAGTgatgtcatgcataattatgtttaaaa
tatcatcatcaaaaaaagCGGTTTGTCGGTTTCGGGCCTTTTTTTGTCGG
TTTATTGGTGAAGAGCACGAAATCTGTGCGGGTATCAGTGAAGGGAAAAG
ATTATGGTGTTGGTCGGTGATTGGGCTGTTTTTGTGGGTGATAGAATCAA
AAAGTGAGCGGTTTTCGGCGATTGTCGAATACGTCGGTTTCTAAGAATTG
ATTATCCTTGAATCCTTGTGCATAAATAATCGAGAAGTAAAATAGCTCAA
GAAGTAAAAAAGATTCTTAACAATAGCCCATaattctgggggggggggta
ctcaaggtaaacgatctaccatatgtgtaaaAATTACCCTTAAGGGTAGT
TTTTCCAAGCTTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007157XLOC_007157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012760-exon-sc0000147-1491911889:226767..227433TCONS_00012760-exon-sc0000147-1491911889:226767..227433Clytia hemisphaericaexon
TCONS_00012760-exon-sc0000147-1510915933:226767..227433TCONS_00012760-exon-sc0000147-1510915933:226767..227433Clytia hemisphaericaexon
TCONS_00012760-exon-sc0000147-1575043694:226767..227433TCONS_00012760-exon-sc0000147-1575043694:226767..227433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:226767..227433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387312	0.075538	0.350827	0.34323	1.14908	0.825475	0.79672	0.55941	0.130552	0.242565	0	0.309537	0.0515178	0.695522	0.131957	0.236017	0.0581507	0.178808	0	0.258502	0.074895	0.438374	0.0888168	0.0807473	0.582175	0.519577	0.106216	0.34007	0.343909	0.175194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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