TCONS_00012762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012762
Unique NameTCONS_00012762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012762 ID=TCONS_00012762|Name=TCONS_00012762|organism=Clytia hemisphaerica|type=transcript|length=952bp
CCTTCCTGTGAGAGACCATCcctccaaatatttttatgtttgacatTGAC
AGCTTTTAATTTACATTTTCTACCCAGTCTCTGGTTTATGTAGGAATGCA
CGCCGCCTGCATATCATCGCTGTAATTGAAGTTTGGGGTGATATCTTCTA
GTATGCACCATGATTATTCTGTATCtttctcttcttctttcaaGACTGTA
GATTTTCAGTTGACTCAATTTTTCCCAATAATTCAAGTGATTCAACAAGG
AAACCCtgttcaaaaatgatttttgcagCAGCTCCAATTGTTGGATAAGG
CATCGCTTTGACGGAGACCATAGTTGGGAGCAGTAATCAAGGTGTGGAAT
AGCAAGTGACTTCCAAAGGGTTCCGTGTCTTGAAGGTTCGGAATGAGCTG
ATGCCTTTGACTTTGCTGATTTGATTTTGGATGTGTTGACTGTAGCTATC
CACATCCAAAGTGACTCCAAGGTCTTTGACTTTGTTTTTGGTCTCAATTT
GGTCATGGGTATCAGAATAATAAACTGAATTTGGTTTCAGCTCTTCATTT
TTCCCATAACGCATATGTTCGAATTTCAGTCCATTGAGTTGCATGTTATT
GATCTCTGACCATTTGTATACTCTCTGATACTCTATTGAGGTCATTTTGA
AGAAGCTGAACATCATCTTGACTGGACACTTCTTTCAGCAGTCTTGTATC
GTCCGCAAATGAGGGCAGCACTGCATGATAAATATCTTCATCAATATCCT
GATATCAATATCATCACAAGAAACAGGAGGGGACCCAGTACGGAACCTTG
GGGCACCCCAGATAAAACATCTGCACTTTTGGAAAGTGTTGACTGAGact
ctttgttttctctttgtTAGGAACGATTTGATCCAGTCGAGAAGTTTTCC
ACAAAATGCCATTTCTTTCAAGTTTATGCAGAAGTATTGAGTGGTCAACC
CG
Run BLAST on NCBI

protein sequence of TCONS_00012762-protein

>TCONS_00012762-protein ID=TCONS_00012762-protein|Name=TCONS_00012762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MMFSFFKMTSIEYQRVYKWSEINNMQLNGLKFEHMRYGKNEELKPNSVYY
SDTHDQIETKNKVKDLGVTLDVDSYSQHIQNQISKVKGISSFRTFKTRNP
LEVTCYSTP
Run BLAST on NCBI

transcript from alignment at sc0000147:229419..230370

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012762 ID=TCONS_00012762|Name=TCONS_00012762|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at sc0000147:229419..230370 (Clytia hemisphaerica)
CGGGTTGACCACTCAATACTTCTGCATAAACTTGAAAGAAATGGCATTTT
GTGGAAAACTTCTCGACTGGATCAAATCGTTCCTAacaaagagaaaacaa
agagtCTCAGTCAACACTTTCCAAAAGTGCAGATGTTTTATCTGGGGTGC
CCCAAGGTTCCGTACTGGGTCCCCTCCTGTTTCTTGTGATGATATTGATA
TCAGGATATTGATGAAGATATTTATCATGCAGTGCTGCCCTCATTTGCGG
ACGATACAAGACTGCTGAAAGAAGTGTCCAGTCAAGATGATGTTCAGCTT
CTTCAAAATGACCTCAATAGAGTATCAGAGAGTATACAAATGGTCAGAGA
TCAATAACATGCAACTCAATGGACTGAAATTCGAACATATGCGTTATGGG
AAAAATGAAGAGCTGAAACCAAATTCAGTTTATTATTCTGATACCCATGA
CCAAATTGAGACCAAAAACAAAGTCAAAGACCTTGGAGTCACTTTGGATG
TGGATAGCTACAGTCAACACATCCAAAATCAAATCAGCAAAGTCAAAGGC
ATCAGCTCATTCCGAACCTTCAAGACACGGAACCCTTTGGAAGTCACTTG
CTATTCCACACCTTGATTACTGCTCCCAACTATGGTCTCCGTCAAAGCGA
TGCCTTATCCAACAATTGGAGCTGctgcaaaaatcatttttgaacaGGGT
TTCCTTGTTGAATCACTTGAATTATTGGGAAAAATTGAGTCAACTGAAAA
TCTACAGTCttgaaagaagaagagaaaGATACAGAATAATCATGGTGCAT
ACTAGAAGATATCACCCCAAACTTCAATTACAGCGATGATATGCAGGCGG
CGTGCATTCCTACATAAACCAGAGACTGGGTAGAAAATGTAAATTAAAAG
CTGTCAatgtcaaacataaaaatatttggaggGATGGTCTCTCACAGGAA
GG

Coding sequence (CDS) from alignment at sc0000147:229419..230370

>TCONS_00012762 ID=TCONS_00012762|Name=TCONS_00012762|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000147:229419..230370 (Clytia hemisphaerica)
ATGATGTTCAGCTTCTTCAAAATGACCTCAATAGAGTATCAGAGAGTATA
CAAATGGTCAGAGATCAATAACATGCAACTCAATGGACTGAAATTCGAAC
ATATGCGTTATGGGAAAAATGAAGAGCTGAAACCAAATTCAGTTTATTAT
TCTGATACCCATGACCAAATTGAGACCAAAAACAAAGTCAAAGACCTTGG
AGTCACTTTGGATGTGGATAGCTACAGTCAACACATCCAAAATCAAATCA
GCAAAGTCAAAGGCATCAGCTCATTCCGAACCTTCAAGACACGGAACCCT
TTGGAAGTCACTTGCTATTCCACACCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007159XLOC_007159Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012762-proteinTCONS_00012762-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012762-exon-sc0000147-1491911889:229419..230370TCONS_00012762-exon-sc0000147-1491911889:229419..230370Clytia hemisphaericaexon
TCONS_00012762-exon-sc0000147-1510915933:229419..230370TCONS_00012762-exon-sc0000147-1510915933:229419..230370Clytia hemisphaericaexon
TCONS_00012762-exon-sc0000147-1575043694:229419..230370TCONS_00012762-exon-sc0000147-1575043694:229419..230370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:229419..230370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286722	0.512194	0.433361	0.688414	2.1521	1.80761	1.06753	1.38815	0.912638	0.761214	0.483765	1.18224	0.606412	0.398007	0.5965	0.359972	0.465988	0.331748	0.56469	0.637382	0.278444	0.405333	0.219349	0.282794	0.768995	0.927487	0.440208	0.279502	0.317988	0.377976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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