TCONS_00012765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012765
Unique NameTCONS_00012765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012765 ID=TCONS_00012765|Name=TCONS_00012765|organism=Clytia hemisphaerica|type=transcript|length=742bp
aattctCACAACAATAATATatatcaaaaaaaagaaaaaatctataATTC
TCCGTGAGGAAAAATCCTCCTTTAGTTACTACAAACCTAGAGGCACCTGC
GTGTAGCCAAATATGGCGATTGAATCAGTTACCttacaataaatttacag
aTAGTCTTGTAGTCGTCATTGAGTGCGGGAAtagaaatatcaactttgaa
cttaaaGAATCTTCCGACCCAGCTGAAAgcgctaaaatttcaaagccCCC
CTGTAAAGGAATCTTCTGACCATGAAGGAATCTTCCAATTATGTCAGAAC
AATCTTTCGACCATGAAGGAATCTTCCAACCGTTCACAGGAAAAAAAGTT
GCGCAGGTGCCTCCTACGTATAGTAATTACCGAGTtgatgtatttgcact
tttgaggacggtaaagtgaccaAAGCGATTAggaaaaacccgcagttctg
acccggaaaatcaaggacggtaaaagcactgatttactgtcgtcctcagt
cagtcaggatgtagtgaaattagaaccttaccgtttccgtcgcagaaaaa
cacacatacataaactcgttaCTGAAGGCCCTGCCTGGACAGAAGTTTTT
TCATCATCAATTAGTGAGACGTAAAAAATCACTGAGGGAGAGAGCACTTc
agattttccgatttttcataATGTCGCTTTGAGAATTTTGATAATGTTGT
Gagaattttgatattgttgcgaatttttttgatattgttgtg
Run BLAST on NCBI

transcript from alignment at sc0000147:451398..452139

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012765 ID=TCONS_00012765|Name=TCONS_00012765|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at sc0000147:451398..452139 (Clytia hemisphaerica)
cacaacaatatcaaaaaaattcgcaacaatatcaaaattctCACAACATT
ATCAAAATTCTCAAAGCGACATtatgaaaaatcggaaaatctgAAGTGCT
CTCTCCCTCAGTGATTTTTTACGTCTCACTAATTGATGATGAAAAAACTT
CTGTCCAGGCAGGGCCTTCAGtaacgagtttatgtatgtgtgtttttctg
cgacggaaacggtaaggttctaatttcactacatcctgactgactgagga
cgacagtaaatcagtgcttttaccgtccttgattttccgggtcagaactg
cgggtttttccTAATCGCTTtggtcactttaccgtcctcaaaagtgcaaa
tacatcaACTCGGTAATTACTATACGTAGGAGGCACCTGCGCAACTTTTT
TTCCTGTGAACGGTTGGAAGATTCCTTCATGGTCGAAAGATTGTTCTGAC
ATAATTGGAAGATTCCTTCATGGTCAGAAGATTCCTTTACAGGGGggctt
tgaaattttagcgcTTTCAGCTGGGTCGGAAGATTCtttaagttcaaagt
tgatatttctaTTCCCGCACTCAATGACGACTACAAGACTAtctgtaaat
ttattgtaaGGTAACTGATTCAATCGCCATATTTGGCTACACGCAGGTGC
CTCTAGGTTTGTAGTAACTAAAGGAGGATTTTTCCTCACGGAGAATtata
gattttttcttttttttgatatATATTATTGTTGTGagaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007162XLOC_007162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012765-exon-sc0000147-1491911889:451398..452139TCONS_00012765-exon-sc0000147-1491911889:451398..452139Clytia hemisphaericaexon
TCONS_00012765-exon-sc0000147-1510915933:451398..452139TCONS_00012765-exon-sc0000147-1510915933:451398..452139Clytia hemisphaericaexon
TCONS_00012765-exon-sc0000147-1575043694:451398..452139TCONS_00012765-exon-sc0000147-1575043694:451398..452139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:451398..452139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266249	0.324544	0.678288	0.612147	0.448815	0.425592	0.171153	0.0801156	0.729181	0.694775	0	1.01959	0.531222	1.28725	0.264581	0.162245	0.349777	0.512175	0	0.592339	0.51485	0.380665	0.152638	0.208155	0.714651	0.510247	0.18254	0.48703	0.147758	0.0752711
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top